Wall clock time and date at job start Tue Mar 31 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47424 * 125.65228 * 359.68397 * 8 6 5 10 10 C 1.55120 * 104.72384 * 155.82104 * 9 8 6 11 11 H 1.09002 * 110.90964 * 155.27646 * 10 9 8 12 12 C 1.47207 * 111.22638 * 279.17607 * 10 9 8 13 13 N 6.42335 * 79.91777 * 231.02125 * 2 1 3 14 14 C 1.55160 * 101.48812 * 37.29629 * 10 9 8 15 15 H 1.08998 * 110.87514 * 205.89984 * 14 10 9 16 16 O 1.42897 * 110.71924 * 82.69450 * 14 10 9 17 17 C 1.34926 * 117.00245 * 155.02494 * 16 14 10 18 18 H 1.07997 * 119.99632 * 0.02562 * 17 16 14 19 19 C 1.38635 * 120.00434 * 180.02562 * 17 16 14 20 20 N 1.31584 * 120.00295 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99743 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47146 * 90.00146 * 21 19 17 23 23 H 1.48503 * 109.47235 * 209.99845 * 21 19 17 24 24 H 1.48503 * 109.47188 * 329.99993 * 21 19 17 25 25 C 1.47020 * 125.64668 * 179.97438 * 8 6 5 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09003 * 110.36778 * 274.75478 * 9 8 6 36 36 H 1.09001 * 110.36126 * 37.07258 * 9 8 6 37 37 H 0.96991 * 120.00041 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.88364 * 300.43514 * 25 8 6 39 39 H 1.09000 * 109.88507 * 61.44735 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9217 -1.9588 -3.6040 10 6 2.5995 -2.5727 -4.9916 11 1 3.4333 -3.1740 -5.3540 12 6 1.3602 -3.3659 -4.9487 13 7 0.4055 -3.9781 -4.9163 14 6 2.4148 -1.2988 -5.8578 15 1 1.7628 -1.4985 -6.7082 16 8 3.6790 -0.7994 -6.2987 17 6 3.6860 -0.0607 -7.4277 18 1 2.7625 0.1293 -7.9543 19 6 4.8786 0.4543 -7.9119 20 7 4.8855 1.1743 -9.0132 21 14 6.4761 0.1249 -7.0014 22 1 7.0926 -1.1230 -7.5190 23 1 7.4087 1.2615 -7.2108 24 1 6.1971 -0.0255 -5.5506 25 6 1.7476 -0.3095 -4.8792 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 3.9737 -1.6796 -3.5450 36 1 2.6701 -2.6625 -2.8106 37 1 5.7198 1.5349 -9.3517 38 1 0.6677 -0.3130 -5.0271 39 1 2.1402 0.6947 -5.0389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:13 Heat of formation + Delta-G solvation = -77.224280 kcal Electronic energy + Delta-G solvation = -22848.802304 eV Core-core repulsion = 19371.953304 eV Total energy + Delta-G solvation = -3476.849000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.75503 -39.19366 -36.83644 -36.32897 -35.37976 -34.00671 -32.07697 -31.03845 -28.69358 -27.52006 -27.44477 -24.82830 -24.39528 -22.15736 -20.78833 -19.38448 -18.43117 -17.91730 -17.05670 -16.43845 -16.30858 -15.80342 -15.15248 -14.71436 -14.28988 -14.20057 -14.00679 -13.78047 -13.41300 -13.02107 -12.84660 -12.61766 -12.56984 -12.40623 -12.23983 -12.11746 -11.97684 -11.91984 -11.70699 -11.56831 -11.42395 -11.27354 -10.96201 -10.81559 -10.37514 -10.11572 -10.01722 -9.91863 -9.50312 -8.59510 -8.36993 -6.13671 -3.85609 2.16806 2.69520 2.80837 2.98659 3.33124 3.36997 3.50163 3.84018 3.92273 4.42973 4.50649 4.62541 4.66646 4.70659 4.81171 4.99522 5.17600 5.29437 5.33788 5.42464 5.46875 5.52305 5.56896 5.64583 5.67832 5.77659 5.82719 5.85917 5.91971 6.03551 6.21519 6.25185 6.31188 6.36324 6.52430 7.56480 7.60334 7.73587 8.19787 8.45646 9.23667 9.67087 10.97892 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017513 B = 0.005174 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.405571 B = 5410.095908 C = 6197.313229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.184 4.184 4 C -0.139 4.139 5 O -0.363 6.363 6 C 0.668 3.332 7 O -0.567 6.567 8 N -0.598 5.598 9 C 0.123 3.877 10 C -0.019 4.019 11 H 0.148 0.852 12 C 0.228 3.772 13 N -0.433 5.433 14 C 0.116 3.884 15 H 0.084 0.916 16 O -0.306 6.306 17 C -0.370 4.370 18 H 0.085 0.915 19 C 0.052 3.948 20 N -0.905 5.905 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.262 1.262 25 C 0.099 3.901 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.272 0.728 38 H 0.070 0.930 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -4.889 17.369 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.241 4.241 4 C -0.197 4.197 5 O -0.278 6.278 6 C 0.424 3.576 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.001 4.001 10 C -0.041 4.041 11 H 0.165 0.835 12 C -0.090 4.090 13 N -0.109 5.109 14 C 0.054 3.946 15 H 0.102 0.898 16 O -0.220 6.220 17 C -0.448 4.448 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.187 1.187 25 C -0.022 4.022 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.605 -5.404 17.553 18.935 hybrid contribution 0.938 0.285 0.177 0.996 sum -3.667 -5.119 17.730 18.815 Atomic orbital electron populations 1.22519 0.94189 1.02791 1.04554 1.22031 0.94249 0.92305 0.81537 1.22515 1.01676 0.95341 1.04552 1.21846 1.02288 1.00994 0.94529 1.86295 1.71647 1.56337 1.13540 1.17412 0.78862 0.81160 0.80215 1.90889 1.41610 1.26638 1.86552 1.47113 1.52606 1.30246 1.03990 1.22322 0.96469 0.86269 0.95024 1.20051 0.90379 0.95414 0.98245 0.83491 1.28503 0.94036 0.93306 0.93193 1.81129 1.10965 1.10507 1.08334 1.22487 0.89090 0.88627 0.94364 0.89777 1.85268 1.23860 1.68910 1.43998 1.20385 0.96556 1.28530 0.99283 0.89706 1.24288 0.98241 0.96275 0.95861 1.69670 1.27847 1.35897 1.21413 0.86216 0.82291 0.77425 0.80979 1.20535 1.21670 1.18653 1.22849 1.00017 1.01331 0.78008 0.89308 0.91299 0.92333 0.91350 0.92080 0.89222 0.91599 0.91422 0.90294 0.88388 0.89841 0.91823 0.91165 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 3 C -0.18 -2.15 8.37 37.15 0.31 -1.84 16 4 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 5 O -0.36 -5.23 9.42 -40.33 -0.38 -5.61 16 6 C 0.67 11.11 7.93 54.06 0.43 11.54 16 7 O -0.57 -10.51 12.21 -19.28 -0.24 -10.74 16 8 N -0.60 -9.55 3.30 -176.17 -0.58 -10.13 16 9 C 0.12 1.60 6.37 -2.41 -0.02 1.59 16 10 C -0.02 -0.25 3.30 -91.14 -0.30 -0.55 16 11 H 0.15 1.62 8.14 -51.93 -0.42 1.20 16 12 C 0.23 3.25 14.54 -20.80 -0.30 2.95 16 13 N -0.43 -7.06 18.53 42.10 0.78 -6.28 16 14 C 0.12 1.98 2.92 -24.90 -0.07 1.91 16 15 H 0.08 1.43 7.79 -51.93 -0.40 1.02 16 16 O -0.31 -6.67 8.33 -16.50 -0.14 -6.81 16 17 C -0.37 -9.62 10.28 30.88 0.32 -9.30 16 18 H 0.09 2.32 7.92 -52.49 -0.42 1.90 16 19 C 0.05 1.42 5.49 -17.51 -0.10 1.32 16 20 N -0.90 -26.24 13.96 55.48 0.77 -25.47 16 21 Si 0.90 21.07 28.62 -169.99 -4.86 16.20 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 25 C 0.10 1.69 6.46 -3.07 -0.02 1.68 16 26 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.80 8.07 -51.93 -0.42 1.38 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -31.27 332.91 -4.46 -35.74 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.63 Total: -0.03 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 0.79 Total: 8.12 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.97 Total: -41.88 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.75 Total: -23.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.27 -4.46 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.486 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds