Wall clock time and date at job start Tue Mar 31 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.47424 * 125.65228 * 359.68397 * 8 6 5 10 10 C 1.55120 * 104.72384 * 155.82104 * 9 8 6 11 11 H 1.09002 * 111.19583 * 279.19238 * 10 9 8 12 12 C 1.47202 * 110.90710 * 155.27886 * 10 9 8 13 13 N 7.73349 * 113.36077 * 235.60932 * 2 1 3 14 14 C 1.55160 * 101.48812 * 37.29629 * 10 9 8 15 15 H 1.08998 * 110.86976 * 82.76848 * 14 10 9 16 16 O 1.42898 * 110.71973 * 205.97087 * 14 10 9 17 17 C 1.34926 * 116.99518 * 204.97764 * 16 14 10 18 18 H 1.08003 * 120.00248 * 359.97438 * 17 16 14 19 19 C 1.38641 * 119.99800 * 180.02562 * 17 16 14 20 20 N 1.31582 * 119.99848 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99935 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47103 * 90.00223 * 21 19 17 23 23 H 1.48504 * 109.46963 * 210.00184 * 21 19 17 24 24 H 1.48504 * 109.47346 * 330.00070 * 21 19 17 25 25 C 1.47020 * 125.64668 * 179.97438 * 8 6 5 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09003 * 110.36778 * 274.75478 * 9 8 6 36 36 H 1.09001 * 110.36126 * 37.07258 * 9 8 6 37 37 H 0.97003 * 119.99820 * 179.97438 * 20 19 17 38 38 H 1.08998 * 109.88364 * 300.43514 * 25 8 6 39 39 H 1.09007 * 109.88370 * 61.60036 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 2.9217 -1.9588 -3.6040 10 6 2.5995 -2.5727 -4.9916 11 1 1.6816 -3.1597 -4.9594 12 6 3.7256 -3.3848 -5.4810 13 7 4.5965 -4.0101 -5.8586 14 6 2.4148 -1.2988 -5.8578 15 1 3.3777 -0.9165 -6.1965 16 8 1.5584 -1.5638 -6.9706 17 6 1.7029 -0.7756 -8.0561 18 1 2.4406 0.0133 -8.0563 19 6 0.9037 -0.9776 -9.1708 20 7 1.0442 -0.2085 -10.2292 21 14 -0.3727 -2.3415 -9.1701 22 1 -1.6600 -1.8144 -8.6505 23 1 -0.5651 -2.8400 -10.5557 24 1 0.0924 -3.4543 -8.3038 25 6 1.7476 -0.3095 -4.8792 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 3.9737 -1.6796 -3.5450 36 1 2.6701 -2.6625 -2.8106 37 1 0.4853 -0.3501 -11.0093 38 1 0.6677 -0.3130 -5.0271 39 1 2.1426 0.6937 -5.0398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:18 Heat of formation + Delta-G solvation = -77.618777 kcal Electronic energy + Delta-G solvation = -22544.907838 eV Core-core repulsion = 19068.041731 eV Total energy + Delta-G solvation = -3476.866107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83682 -39.15168 -36.94679 -36.18478 -35.60454 -34.09286 -32.08965 -31.08808 -28.67017 -27.58197 -27.51082 -25.02074 -24.11646 -22.24377 -20.82952 -19.46190 -18.52174 -17.80624 -17.17032 -16.77443 -16.19792 -15.95242 -15.09241 -14.62841 -14.43973 -14.16638 -13.81922 -13.64546 -13.59354 -13.34818 -12.77731 -12.68016 -12.56106 -12.39918 -12.27926 -12.12273 -12.04190 -11.98061 -11.92553 -11.51928 -11.46554 -11.36695 -10.97040 -10.69121 -10.45350 -10.11927 -10.04247 -9.93663 -9.50526 -8.71542 -8.36098 -6.12692 -3.84683 2.02179 2.81466 2.88236 2.92555 3.35164 3.38731 3.52011 3.66642 4.09402 4.44347 4.51989 4.56652 4.59409 4.60538 4.74394 5.01536 5.12713 5.25401 5.28018 5.31727 5.36534 5.42503 5.50542 5.51237 5.60192 5.71048 5.77677 5.80285 5.89789 6.04471 6.16252 6.19800 6.23344 6.32164 6.44855 7.46241 7.70137 7.74702 8.20616 8.35084 9.24707 9.67751 10.98851 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.004444 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.801600 B = 6299.604481 C = 7014.041357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.184 4.184 4 C -0.140 4.140 5 O -0.363 6.363 6 C 0.669 3.331 7 O -0.562 6.562 8 N -0.599 5.599 9 C 0.123 3.877 10 C -0.014 4.014 11 H 0.137 0.863 12 C 0.229 3.771 13 N -0.431 5.431 14 C 0.116 3.884 15 H 0.078 0.922 16 O -0.305 6.305 17 C -0.372 4.372 18 H 0.086 0.914 19 C 0.053 3.947 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.264 1.264 25 C 0.104 3.896 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -1.111 22.074 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.241 4.241 4 C -0.197 4.197 5 O -0.278 6.278 6 C 0.424 3.576 7 O -0.451 6.451 8 N -0.342 5.342 9 C -0.002 4.002 10 C -0.036 4.036 11 H 0.154 0.846 12 C -0.089 4.089 13 N -0.107 5.107 14 C 0.053 3.947 15 H 0.096 0.904 16 O -0.220 6.220 17 C -0.449 4.449 18 H 0.103 0.897 19 C -0.146 4.146 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.188 1.188 25 C -0.017 4.017 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.816 -1.825 21.469 21.623 hybrid contribution -0.841 -0.092 -0.026 0.846 sum 0.975 -1.917 21.443 21.551 Atomic orbital electron populations 1.22526 0.93990 1.02980 1.04647 1.22047 0.94406 0.92200 0.81439 1.22521 1.01527 0.95433 1.04641 1.21851 1.02200 1.01106 0.94536 1.86295 1.71641 1.56364 1.13527 1.17413 0.78796 0.81235 0.80163 1.90915 1.41118 1.26620 1.86454 1.46996 1.52871 1.30048 1.04242 1.22187 0.95504 0.86979 0.95504 1.20113 0.93315 0.95402 0.94790 0.84564 1.28390 0.93684 0.93426 0.93442 1.81208 1.11140 1.10054 1.08250 1.22567 0.94973 0.89633 0.87480 0.90367 1.85329 1.57398 1.56962 1.22267 1.20397 1.21173 1.12613 0.90759 0.89679 1.24293 0.98152 0.98007 0.94177 1.69673 1.41079 1.39362 1.04636 0.86222 0.81387 0.82479 0.76896 1.20409 1.21572 1.18803 1.22802 1.02903 0.99167 0.76845 0.89201 0.91284 0.92139 0.91273 0.92204 0.89227 0.91482 0.91516 0.90260 0.90215 0.88770 0.91817 0.89182 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 3 C -0.18 -1.86 8.37 37.15 0.31 -1.55 16 4 C -0.14 -1.01 8.85 37.16 0.33 -0.69 16 5 O -0.36 -4.53 9.42 -40.33 -0.38 -4.91 16 6 C 0.67 9.80 7.93 54.06 0.43 10.23 16 7 O -0.56 -9.49 12.21 -19.28 -0.24 -9.72 16 8 N -0.60 -8.35 3.32 -176.16 -0.59 -8.94 16 9 C 0.12 1.38 6.36 -2.41 -0.02 1.37 16 10 C -0.01 -0.19 3.22 -91.14 -0.29 -0.48 16 11 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.23 3.54 14.73 -20.74 -0.31 3.23 16 13 N -0.43 -7.61 18.54 42.18 0.78 -6.83 16 14 C 0.12 2.00 2.88 -24.90 -0.07 1.93 16 15 H 0.08 1.37 7.78 -51.93 -0.40 0.96 16 16 O -0.31 -7.00 8.34 -16.50 -0.14 -7.14 16 17 C -0.37 -10.01 10.28 30.88 0.32 -9.69 16 18 H 0.09 2.39 7.92 -52.48 -0.42 1.97 16 19 C 0.05 1.48 5.49 -17.51 -0.10 1.38 16 20 N -0.90 -26.81 13.96 55.48 0.77 -26.03 16 21 Si 0.90 21.91 28.62 -169.99 -4.86 17.05 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.10 1.67 6.64 -3.07 -0.02 1.65 16 26 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 36 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 39 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -31.93 333.15 -4.46 -36.38 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.62 Total: -1.98 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 0.79 Total: 7.10 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.97 Total: -41.80 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.75 Total: -21.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.93 -4.46 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.236 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds