Wall clock time and date at job start Tue Mar 31 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 C 1.53000 * 109.46876 * 240.00137 * 2 1 3 5 5 O 1.45203 * 109.46921 * 120.00433 * 2 1 3 6 6 C 1.34630 * 116.99789 * 60.00183 * 5 2 1 7 7 O 1.21512 * 120.00391 * 359.97438 * 6 5 2 8 8 N 1.34783 * 119.99536 * 180.02562 * 6 5 2 9 9 C 1.47423 * 125.64758 * 0.03349 * 8 6 5 10 10 C 1.55125 * 104.93790 * 203.97108 * 9 8 6 11 11 H 1.09003 * 111.16155 * 205.12680 * 10 9 8 12 12 C 1.47208 * 110.93474 * 81.21975 * 10 9 8 13 13 N 6.42820 * 129.96526 * 146.80660 * 2 1 3 14 14 C 1.55157 * 101.48944 * 323.22378 * 10 9 8 15 15 H 1.08999 * 110.71668 * 276.83244 * 14 10 9 16 16 O 1.42900 * 110.71738 * 153.73692 * 14 10 9 17 17 C 1.34924 * 116.99778 * 152.44304 * 16 14 10 18 18 H 1.08005 * 119.99986 * 359.97438 * 17 16 14 19 19 C 1.38633 * 120.00265 * 179.97438 * 17 16 14 20 20 N 1.31588 * 119.99667 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00461 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46676 * 270.00057 * 21 19 17 23 23 H 1.48502 * 109.46977 * 29.99356 * 21 19 17 24 24 H 1.48494 * 109.47494 * 150.00083 * 21 19 17 25 25 C 1.47025 * 125.64470 * 179.97438 * 8 6 5 26 26 H 1.09001 * 109.47382 * 299.99889 * 1 2 3 27 27 H 1.09009 * 109.47351 * 59.99632 * 1 2 3 28 28 H 1.09000 * 109.47700 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46830 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47439 * 299.99983 * 3 2 1 31 31 H 1.09000 * 109.46829 * 60.00600 * 3 2 1 32 32 H 1.08995 * 109.47812 * 300.00213 * 4 2 1 33 33 H 1.09001 * 109.47208 * 60.00806 * 4 2 1 34 34 H 1.09000 * 109.46965 * 179.97438 * 4 2 1 35 35 H 1.08996 * 110.36829 * 322.93082 * 9 8 6 36 36 H 1.08999 * 110.36376 * 85.15297 * 9 8 6 37 37 H 0.97001 * 119.99805 * 359.97438 * 20 19 17 38 38 H 1.08996 * 109.88376 * 59.55523 * 25 8 6 39 39 H 1.08999 * 110.01144 * 298.46013 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3381 7 8 0.9508 -2.5095 0.5038 8 7 2.0671 -2.6655 2.4170 9 6 2.9157 -2.1397 3.5018 10 6 3.5969 -3.3897 4.1182 11 1 3.8819 -3.2114 5.1551 12 6 4.7606 -3.8033 3.3171 13 7 5.6590 -4.1229 2.6973 14 6 2.4576 -4.4391 4.0271 15 1 1.7756 -4.3420 4.8718 16 8 2.9932 -5.7623 3.9614 17 6 2.2211 -6.7600 4.4399 18 1 1.2462 -6.5396 4.8491 19 6 2.6793 -8.0680 4.4064 20 7 3.8669 -8.3365 3.9075 21 14 1.6101 -9.4494 5.0682 22 1 1.8962 -9.6485 6.5118 23 1 0.1787 -9.0956 4.8915 24 1 1.9055 -10.7022 4.3277 25 6 1.7475 -4.0709 2.7074 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2495 35 1 3.6649 -1.4574 3.1006 36 1 2.3050 -1.6343 4.2500 37 1 4.4216 -7.6193 3.5628 38 1 2.1106 -4.7080 1.9010 39 1 0.6701 -4.1929 2.8194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:23 Heat of formation + Delta-G solvation = -83.640916 kcal Electronic energy + Delta-G solvation = -22761.596507 eV Core-core repulsion = 19284.469260 eV Total energy + Delta-G solvation = -3477.127246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79222 -39.10689 -36.85121 -35.91519 -35.34267 -34.05602 -31.96883 -30.80263 -28.45012 -27.55743 -27.48298 -24.70557 -23.85768 -22.37378 -20.95507 -19.44524 -18.39933 -17.93287 -17.40451 -16.48031 -16.29986 -15.30332 -14.93159 -14.67589 -14.54991 -14.09350 -13.88953 -13.63902 -13.30260 -13.06651 -13.01735 -12.75046 -12.65601 -12.31880 -12.21852 -12.01798 -11.94497 -11.78927 -11.58135 -11.49848 -11.28643 -10.86027 -10.84232 -10.42333 -10.23805 -10.18444 -10.00210 -9.91478 -9.38253 -8.64752 -8.13464 -6.39626 -3.76492 2.09561 2.91705 3.16521 3.23712 3.36357 3.42110 3.56466 3.84693 4.15232 4.33733 4.58634 4.62494 4.67981 4.76875 4.80873 4.93718 5.30001 5.31786 5.38095 5.38940 5.42658 5.53117 5.55745 5.57179 5.62741 5.73739 5.76998 5.82439 5.96184 6.06849 6.18613 6.22847 6.32426 6.37432 6.50926 7.52750 7.55769 8.06057 8.40397 8.70084 9.28191 9.85225 11.06745 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.004208 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.558604 B = 6651.810857 C = 7123.105848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.363 6.363 6 C 0.667 3.333 7 O -0.565 6.565 8 N -0.600 5.600 9 C 0.119 3.881 10 C -0.013 4.013 11 H 0.137 0.863 12 C 0.230 3.770 13 N -0.431 5.431 14 C 0.110 3.890 15 H 0.084 0.916 16 O -0.290 6.290 17 C -0.463 4.463 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.905 5.905 21 Si 1.093 2.907 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.281 1.281 25 C 0.100 3.900 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.277 0.723 38 H 0.080 0.920 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 19.592 -2.033 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.278 6.278 6 C 0.423 3.577 7 O -0.454 6.454 8 N -0.342 5.342 9 C -0.005 4.005 10 C -0.035 4.035 11 H 0.155 0.845 12 C -0.088 4.088 13 N -0.106 5.106 14 C 0.048 3.952 15 H 0.102 0.898 16 O -0.205 6.205 17 C -0.542 4.542 18 H 0.079 0.921 19 C -0.202 4.202 20 N -0.542 5.542 21 Si 0.920 3.080 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.206 1.206 25 C -0.021 4.021 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.971 17.348 -3.191 18.327 hybrid contribution -0.580 1.881 0.002 1.968 sum -5.551 19.230 -3.189 20.267 Atomic orbital electron populations 1.22514 0.94039 1.05174 1.02277 1.22041 0.94351 0.91433 0.82298 1.21844 1.02245 0.92575 1.02963 1.22526 1.01623 1.03661 0.96386 1.86284 1.71680 1.23630 1.46236 1.17443 0.78922 0.80274 0.81096 1.90903 1.41464 1.70442 1.42606 1.47085 1.52999 1.13166 1.20984 1.22319 0.93757 0.94662 0.89786 1.20225 0.88901 0.95950 0.98396 0.84530 1.28254 0.93622 0.93197 0.93708 1.81162 1.12168 1.07901 1.09399 1.22670 0.91374 0.86218 0.94962 0.89810 1.85492 1.42174 1.10636 1.82155 1.21776 1.00579 0.87672 1.44151 0.92063 1.26108 0.99163 0.96861 0.98077 1.70535 1.09409 1.36735 1.37562 0.83122 0.73718 0.75061 0.76107 1.21353 1.21392 1.20623 1.22841 1.00953 0.78134 1.00187 0.92198 0.91290 0.89286 0.91515 0.90258 0.91494 0.89278 0.91253 0.92201 0.89447 0.88981 0.91257 0.90156 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.18 -2.20 8.37 37.16 0.31 -1.88 16 5 O -0.36 -5.05 9.42 -40.30 -0.38 -5.42 16 6 C 0.67 10.94 7.93 54.06 0.43 11.36 16 7 O -0.57 -10.55 12.21 -19.28 -0.24 -10.78 16 8 N -0.60 -9.38 3.30 -176.17 -0.58 -9.96 16 9 C 0.12 1.42 6.36 -2.41 -0.02 1.40 16 10 C -0.01 -0.18 3.53 -91.14 -0.32 -0.50 16 11 H 0.14 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.23 4.36 13.79 -20.71 -0.29 4.07 16 13 N -0.43 -9.37 18.55 42.20 0.78 -8.59 16 14 C 0.11 2.00 3.23 -24.90 -0.08 1.92 16 15 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16 16 O -0.29 -7.36 8.02 -16.49 -0.13 -7.49 16 17 C -0.46 -12.57 9.82 30.88 0.30 -12.26 16 18 H 0.06 1.55 7.66 -52.48 -0.40 1.15 16 19 C 0.00 0.00 5.49 -17.51 -0.10 -0.10 16 20 N -0.91 -28.29 13.70 55.48 0.76 -27.53 16 21 Si 1.09 24.59 29.92 -169.99 -5.09 19.51 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.10 1.81 6.48 -3.06 -0.02 1.79 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.97 7.94 -51.93 -0.41 0.55 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.28 9.02 7.97 -40.82 -0.33 8.70 16 38 H 0.08 1.73 8.06 -51.93 -0.42 1.31 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -35.10 332.44 -4.70 -39.80 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.60 Total: 0.71 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.76 Total: 4.76 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.96 Total: -46.08 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.75 Total: -23.70 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.09 Total: 19.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.10 -4.70 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.843 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds