Wall clock time and date at job start Tue Mar 31 2020 06:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34631 * 119.41875 * 2 1 4 4 C 1.41278 * 119.77787 * 180.02562 * 3 2 1 5 5 O 1.35385 * 120.65433 * 180.02562 * 4 3 2 6 6 C 1.42897 * 116.99610 * 1.44451 * 5 4 3 7 7 H 1.08998 * 109.47453 * 36.51141 * 6 5 4 8 8 C 1.50698 * 109.47138 * 276.50829 * 6 5 4 9 9 H 1.08004 * 119.99634 * 124.22071 * 8 6 5 10 10 C 1.37870 * 120.00499 * 304.22794 * 8 6 5 11 11 N 1.31520 * 119.99974 * 7.72141 * 10 8 6 12 12 Si 1.86797 * 120.00567 * 187.72101 * 10 8 6 13 13 H 1.48499 * 109.47471 * 270.00060 * 12 10 8 14 14 H 1.48501 * 109.46927 * 29.99987 * 12 10 8 15 15 H 1.48500 * 109.47337 * 149.99346 * 12 10 8 16 16 C 1.53004 * 109.47180 * 156.51137 * 6 5 4 17 17 N 1.46900 * 109.47204 * 293.56799 * 16 6 5 18 18 C 1.46903 * 109.47065 * 62.89065 * 17 16 6 19 19 C 1.46891 * 109.47268 * 182.89344 * 17 16 6 20 20 C 1.46905 * 109.46838 * 302.89389 * 17 16 6 21 21 C 1.38305 * 118.69833 * 0.27977 * 4 3 2 22 22 C 1.40030 * 118.85238 * 359.48047 * 21 4 3 23 23 O 1.22007 * 119.93877 * 180.24935 * 22 21 4 24 24 O 1.34086 * 119.41667 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47218 * 89.99991 * 1 2 3 26 26 H 1.09002 * 109.47111 * 209.99603 * 1 2 3 27 27 H 1.09001 * 109.47155 * 329.99396 * 1 2 3 28 28 H 1.08003 * 120.11483 * 0.02812 * 3 2 1 29 29 H 0.97005 * 119.99423 * 355.38279 * 11 10 8 30 30 H 1.09007 * 109.46897 * 53.56326 * 16 6 5 31 31 H 1.08999 * 109.47100 * 173.56625 * 16 6 5 32 32 H 1.08996 * 109.46866 * 49.02721 * 18 17 16 33 33 H 1.08997 * 109.46988 * 169.02214 * 18 17 16 34 34 H 1.08997 * 109.47187 * 289.02254 * 18 17 16 35 35 H 1.08997 * 109.47319 * 60.00148 * 19 17 16 36 36 H 1.09005 * 109.47397 * 179.97438 * 19 17 16 37 37 H 1.08998 * 109.47632 * 300.00063 * 19 17 16 38 38 H 1.09003 * 109.46999 * 60.00127 * 20 17 16 39 39 H 1.08996 * 109.46554 * 180.02562 * 20 17 16 40 40 H 1.08996 * 109.46865 * 299.99921 * 20 17 16 41 41 H 1.07998 * 120.57635 * 179.72966 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1683 1.1727 0.0000 4 6 3.5810 1.1816 -0.0005 5 8 4.2640 2.3505 0.0000 6 6 3.4922 3.5527 0.0332 7 1 2.6146 3.4038 0.6622 8 6 3.0541 3.9071 -1.3645 9 1 2.0053 4.0433 -1.5834 10 6 3.9920 4.0575 -2.3637 11 7 5.2494 3.7449 -2.1378 12 14 3.4771 4.7050 -4.0385 13 1 3.0925 3.5675 -4.9122 14 1 2.3192 5.6212 -3.8803 15 1 4.6102 5.4412 -4.6544 16 6 4.3425 4.6891 0.6047 17 7 4.6408 4.4150 2.0167 18 6 5.4382 3.1855 2.1190 19 6 5.3981 5.5385 2.5842 20 6 3.3843 4.2469 2.7589 21 6 4.2528 -0.0274 -0.0070 22 6 3.5089 -1.2138 -0.0016 23 8 4.0812 -2.2913 -0.0025 24 8 2.1656 -1.1680 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6207 2.1036 0.0005 29 1 5.5295 3.4726 -1.2499 30 1 5.2745 4.7628 0.0441 31 1 3.7950 5.6282 0.5246 32 1 6.2710 3.2332 1.4174 33 1 5.8234 3.0857 3.1338 34 1 4.8120 2.3255 1.8819 35 1 4.8065 6.4507 2.5083 36 1 5.6191 5.3354 3.6321 37 1 6.3305 5.6633 2.0335 38 1 2.8223 3.4132 2.3378 39 1 3.6056 4.0440 3.8067 40 1 2.7926 5.1592 2.6829 41 1 5.3324 -0.0560 -0.0120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226958804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:01 Heat of formation + Delta-G solvation = 26.489194 kcal Electronic energy + Delta-G solvation = -24054.481291 eV Core-core repulsion = 20633.899816 eV Total energy + Delta-G solvation = -3420.581475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.80217 -42.68048 -40.13945 -38.44741 -35.71548 -34.51986 -33.05119 -31.70332 -30.69537 -30.56282 -28.73528 -27.73612 -25.51197 -24.83600 -24.21447 -22.85282 -19.94145 -19.29123 -19.18966 -18.77242 -18.41978 -18.27983 -17.97714 -17.60843 -16.65663 -16.08793 -15.51444 -15.28258 -15.16489 -14.98086 -14.73762 -14.60791 -14.50496 -14.42279 -14.34933 -14.18364 -14.05566 -13.98857 -13.69294 -13.44065 -13.11338 -12.95718 -12.82154 -12.15305 -11.92498 -11.41934 -11.07859 -11.04674 -10.36539 -10.09819 -9.06934 -8.20546 -6.24588 -0.27096 -0.05760 0.83499 1.55083 1.80662 1.94731 1.99028 2.12291 2.23526 2.27518 2.36735 2.54814 2.87564 2.90241 2.98732 3.11724 3.18985 3.27027 3.31885 3.35377 3.42406 3.49724 3.52244 3.66448 3.73210 3.77483 3.82851 3.95769 4.01582 4.15744 4.32762 4.34493 4.45741 4.69183 4.84888 5.03169 5.23015 5.63135 6.19872 6.44728 6.50535 6.88768 6.91192 7.56655 9.12072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.167 3.833 3 C -0.299 4.299 4 C 0.262 3.738 5 O -0.309 6.309 6 C 0.166 3.834 7 H 0.062 0.938 8 C -0.640 4.640 9 H 0.079 0.921 10 C 0.050 3.950 11 N -0.852 5.852 12 Si 1.061 2.939 13 H -0.276 1.276 14 H -0.279 1.279 15 H -0.274 1.274 16 C -0.003 4.003 17 N -0.274 5.274 18 C -0.044 4.044 19 C -0.043 4.043 20 C -0.047 4.047 21 C -0.356 4.356 22 C 0.512 3.488 23 O -0.488 6.488 24 O -0.273 6.273 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.163 0.837 29 H 0.278 0.722 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 9.955 16.735 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 C -0.318 4.318 4 C 0.212 3.788 5 O -0.221 6.221 6 C 0.113 3.887 7 H 0.080 0.920 8 C -0.675 4.675 9 H 0.097 0.903 10 C -0.163 4.163 11 N -0.484 5.484 12 Si 0.886 3.114 13 H -0.202 1.202 14 H -0.204 1.204 15 H -0.199 1.199 16 C -0.122 4.122 17 N 0.067 4.933 18 C -0.185 4.185 19 C -0.185 4.185 20 C -0.188 4.188 21 C -0.377 4.377 22 C 0.367 3.633 23 O -0.379 6.379 24 O -0.183 6.183 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.181 0.819 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.939 9.661 15.247 18.154 hybrid contribution -0.452 -0.022 1.245 1.324 sum -2.392 9.638 16.492 19.251 Atomic orbital electron populations 1.21030 0.85474 1.05193 1.05333 1.22179 0.94712 0.82259 0.89019 1.21368 0.94251 0.99477 1.16688 1.19454 0.89712 0.86349 0.83288 1.86151 1.38917 1.13167 1.83911 1.20804 0.88495 0.79473 0.99974 0.92015 1.22109 0.97180 1.56355 0.91894 0.90298 1.26112 0.93179 0.92092 1.04963 1.70985 1.17535 1.35221 1.24668 0.83549 0.76417 0.77582 0.73864 1.20202 1.20423 1.19902 1.24977 1.07656 1.04274 0.75325 1.46429 1.14758 1.15188 1.16925 1.24342 1.00160 0.86921 1.07125 1.24076 1.00670 0.90281 1.03438 1.24102 0.86187 1.08697 0.99847 1.21739 1.02308 0.88550 1.25063 1.18575 0.77527 0.90608 0.76616 1.91048 1.63748 1.32319 1.50834 1.83442 1.26009 1.34049 1.74809 0.88137 0.89158 0.88364 0.81945 0.90819 0.84715 0.84539 0.86039 0.87352 0.85521 0.86507 0.86754 0.86359 0.86495 0.86648 0.86267 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.19 36.01 0.37 0.72 16 2 C 0.17 0.12 6.94 -35.59 -0.25 -0.13 16 3 C -0.30 -0.10 8.28 -39.70 -0.33 -0.43 16 4 C 0.26 0.51 6.11 -38.40 -0.23 0.28 16 5 O -0.31 -0.14 4.77 -17.85 -0.09 -0.22 16 6 C 0.17 -0.26 1.37 -27.88 -0.04 -0.29 16 7 H 0.06 -0.28 3.98 -51.93 -0.21 -0.48 16 8 C -0.64 -3.03 8.11 -34.44 -0.28 -3.31 16 9 H 0.08 0.44 7.83 -52.48 -0.41 0.03 16 10 C 0.05 0.40 5.22 -17.82 -0.09 0.31 16 11 N -0.85 -7.92 13.01 55.43 0.72 -7.20 16 12 Si 1.06 8.08 29.91 -169.99 -5.08 3.00 16 13 H -0.28 -2.47 7.11 56.52 0.40 -2.07 16 14 H -0.28 -1.87 7.11 56.52 0.40 -1.46 16 15 H -0.27 -2.40 7.11 56.52 0.40 -2.00 16 16 C 0.00 0.02 3.48 -3.82 -0.01 0.01 16 17 N -0.27 3.25 0.05 -395.63 -0.02 3.23 16 18 C -0.04 0.46 7.06 60.07 0.42 0.88 16 19 C -0.04 0.61 7.99 60.06 0.48 1.09 16 20 C -0.05 0.62 7.57 60.07 0.46 1.08 16 21 C -0.36 -1.54 10.01 -38.89 -0.39 -1.93 16 22 C 0.51 3.42 7.92 31.40 0.25 3.67 16 23 O -0.49 -5.13 17.94 -19.72 -0.35 -5.48 16 24 O -0.27 -1.24 9.81 -18.63 -0.18 -1.42 16 25 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 26 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 27 H 0.10 -0.55 8.06 -51.93 -0.42 -0.97 16 28 H 0.16 -0.25 5.86 -52.48 -0.31 -0.56 16 29 H 0.28 1.86 4.69 -40.82 -0.19 1.67 16 30 H 0.13 -0.48 6.06 -51.93 -0.31 -0.80 16 31 H 0.14 -1.04 8.12 -51.93 -0.42 -1.46 16 32 H 0.12 -1.06 7.93 -51.93 -0.41 -1.47 16 33 H 0.11 -1.42 7.97 -51.93 -0.41 -1.83 16 34 H 0.13 -1.01 5.28 -51.93 -0.27 -1.28 16 35 H 0.12 -1.75 8.13 -51.93 -0.42 -2.17 16 36 H 0.11 -1.82 8.06 -51.93 -0.42 -2.24 16 37 H 0.12 -1.60 8.14 -51.93 -0.42 -2.02 16 38 H 0.12 -1.37 5.87 -51.93 -0.31 -1.68 16 39 H 0.11 -1.76 8.14 -51.93 -0.42 -2.19 16 40 H 0.12 -1.72 8.14 -51.93 -0.42 -2.14 16 41 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 323.68 15.07 4.88 4.88 Total: 0.00 -22.01 323.68 -5.62 -27.63 By element: Atomic # 1 Polarization: -20.51 SS G_CDS: -5.85 Total: -26.36 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 0.35 Total: 1.95 kcal Atomic # 7 Polarization: -4.68 SS G_CDS: 0.70 Total: -3.98 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.62 Total: -7.13 kcal Atomic # 14 Polarization: 8.08 SS G_CDS: -5.08 Total: 3.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -22.01 -5.62 -27.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226958804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.124 kcal (2) G-P(sol) polarization free energy of solvation -22.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds