Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34631 * 119.41875 * 2 1 4 4 C 1.41278 * 119.77787 * 180.02562 * 3 2 1 5 5 O 1.35385 * 120.65433 * 180.02562 * 4 3 2 6 6 C 1.42897 * 116.99610 * 1.44451 * 5 4 3 7 7 H 1.08998 * 109.47453 * 36.51141 * 6 5 4 8 8 C 1.50698 * 109.47138 * 276.50829 * 6 5 4 9 9 H 1.08004 * 119.99634 * 124.22071 * 8 6 5 10 10 C 1.37870 * 120.00499 * 304.22794 * 8 6 5 11 11 N 1.31520 * 119.99974 * 7.72141 * 10 8 6 12 12 Si 1.86797 * 120.00567 * 187.72101 * 10 8 6 13 13 H 1.48499 * 109.47471 * 270.00060 * 12 10 8 14 14 H 1.48501 * 109.46927 * 29.99987 * 12 10 8 15 15 H 1.48500 * 109.47337 * 149.99346 * 12 10 8 16 16 C 1.53004 * 109.47180 * 156.51137 * 6 5 4 17 17 N 1.46900 * 109.47204 * 293.56799 * 16 6 5 18 18 C 1.46903 * 109.47065 * 62.89065 * 17 16 6 19 19 C 1.46891 * 109.47268 * 182.89344 * 17 16 6 20 20 C 1.46905 * 109.46838 * 302.89389 * 17 16 6 21 21 C 1.38305 * 118.69833 * 0.27977 * 4 3 2 22 22 C 1.40030 * 118.85238 * 359.48047 * 21 4 3 23 23 O 1.22007 * 119.93877 * 180.24935 * 22 21 4 24 24 O 1.34086 * 119.41667 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47218 * 89.99991 * 1 2 3 26 26 H 1.09002 * 109.47111 * 209.99603 * 1 2 3 27 27 H 1.09001 * 109.47155 * 329.99396 * 1 2 3 28 28 H 1.08003 * 120.11483 * 0.02812 * 3 2 1 29 29 H 0.97005 * 119.99423 * 355.38279 * 11 10 8 30 30 H 1.09007 * 109.46897 * 53.56326 * 16 6 5 31 31 H 1.08999 * 109.47100 * 173.56625 * 16 6 5 32 32 H 1.08996 * 109.46866 * 49.02721 * 18 17 16 33 33 H 1.08997 * 109.46988 * 169.02214 * 18 17 16 34 34 H 1.08997 * 109.47187 * 289.02254 * 18 17 16 35 35 H 1.08997 * 109.47319 * 60.00148 * 19 17 16 36 36 H 1.09005 * 109.47397 * 179.97438 * 19 17 16 37 37 H 1.08998 * 109.47632 * 300.00063 * 19 17 16 38 38 H 1.09003 * 109.46999 * 60.00127 * 20 17 16 39 39 H 1.08996 * 109.46554 * 180.02562 * 20 17 16 40 40 H 1.08996 * 109.46865 * 299.99921 * 20 17 16 41 41 H 1.07998 * 120.57635 * 179.72966 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1683 1.1727 0.0000 4 6 3.5810 1.1816 -0.0005 5 8 4.2640 2.3505 0.0000 6 6 3.4922 3.5527 0.0332 7 1 2.6146 3.4038 0.6622 8 6 3.0541 3.9071 -1.3645 9 1 2.0053 4.0433 -1.5834 10 6 3.9920 4.0575 -2.3637 11 7 5.2494 3.7449 -2.1378 12 14 3.4771 4.7050 -4.0385 13 1 3.0925 3.5675 -4.9122 14 1 2.3192 5.6212 -3.8803 15 1 4.6102 5.4412 -4.6544 16 6 4.3425 4.6891 0.6047 17 7 4.6408 4.4150 2.0167 18 6 5.4382 3.1855 2.1190 19 6 5.3981 5.5385 2.5842 20 6 3.3843 4.2469 2.7589 21 6 4.2528 -0.0274 -0.0070 22 6 3.5089 -1.2138 -0.0016 23 8 4.0812 -2.2913 -0.0025 24 8 2.1656 -1.1680 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6207 2.1036 0.0005 29 1 5.5295 3.4726 -1.2499 30 1 5.2745 4.7628 0.0441 31 1 3.7950 5.6282 0.5246 32 1 6.2710 3.2332 1.4174 33 1 5.8234 3.0857 3.1338 34 1 4.8120 2.3255 1.8819 35 1 4.8065 6.4507 2.5083 36 1 5.6191 5.3354 3.6321 37 1 6.3305 5.6633 2.0335 38 1 2.8223 3.4132 2.3378 39 1 3.6056 4.0440 3.8067 40 1 2.7926 5.1592 2.6829 41 1 5.3324 -0.0560 -0.0120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226958804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = 18.203679 kcal Electronic energy + Delta-G solvation = -24054.840577 eV Core-core repulsion = 20633.899816 eV Total energy + Delta-G solvation = -3420.940762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.25907 -42.78239 -40.18483 -38.91037 -35.95562 -34.71382 -33.23153 -31.52972 -29.68869 -29.62242 -28.70448 -27.69009 -25.56957 -24.80709 -24.13233 -22.69509 -20.07316 -19.38132 -19.05031 -18.52913 -17.98956 -17.92397 -17.83474 -17.54774 -16.87578 -16.11039 -15.69251 -15.41039 -14.95772 -14.69863 -14.57588 -14.40915 -14.16942 -14.00382 -13.65731 -13.51099 -13.37503 -13.33832 -13.27191 -13.23960 -13.10948 -12.92595 -12.87229 -12.75013 -12.04514 -11.84362 -11.53916 -11.38315 -10.85281 -10.36389 -9.37318 -8.69599 -6.68917 -0.47114 0.55689 0.81607 1.30919 1.50740 1.61701 1.69542 1.90202 2.23848 2.41741 2.68672 2.89762 2.95811 3.11595 3.23484 3.52431 3.65689 3.84295 3.88180 4.03889 4.11764 4.13873 4.21064 4.25955 4.34194 4.37546 4.44769 4.49497 4.62176 4.65300 4.66603 4.74064 4.74974 4.76679 4.82769 5.03958 5.14410 5.43896 5.94407 6.14840 6.19440 6.48017 6.50552 7.12918 8.67757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.168 3.832 3 C -0.300 4.300 4 C 0.283 3.717 5 O -0.303 6.303 6 C 0.156 3.844 7 H 0.101 0.899 8 C -0.633 4.633 9 H 0.073 0.927 10 C 0.024 3.976 11 N -0.903 5.903 12 Si 1.074 2.926 13 H -0.302 1.302 14 H -0.260 1.260 15 H -0.297 1.297 16 C 0.014 3.986 17 N -0.259 5.259 18 C -0.046 4.046 19 C -0.046 4.046 20 C -0.055 4.055 21 C -0.387 4.387 22 C 0.505 3.495 23 O -0.548 6.548 24 O -0.285 6.285 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.191 0.809 29 H 0.287 0.713 30 H 0.107 0.893 31 H 0.159 0.841 32 H 0.100 0.900 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 12.387 19.717 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 C -0.319 4.319 4 C 0.231 3.769 5 O -0.214 6.214 6 C 0.103 3.897 7 H 0.119 0.881 8 C -0.671 4.671 9 H 0.091 0.909 10 C -0.186 4.186 11 N -0.540 5.540 12 Si 0.902 3.098 13 H -0.229 1.229 14 H -0.184 1.184 15 H -0.224 1.224 16 C -0.107 4.107 17 N 0.083 4.917 18 C -0.188 4.188 19 C -0.186 4.186 20 C -0.196 4.196 21 C -0.408 4.408 22 C 0.364 3.636 23 O -0.446 6.446 24 O -0.195 6.195 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.152 0.848 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.176 0.824 32 H 0.119 0.881 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.028 12.150 18.237 22.281 hybrid contribution 0.046 -0.651 0.374 0.752 sum -3.982 11.499 18.611 22.237 Atomic orbital electron populations 1.21293 0.82088 1.07283 1.06228 1.23095 0.96399 0.81205 0.87240 1.21626 0.93246 1.00487 1.16497 1.19552 0.90519 0.86186 0.80652 1.86217 1.39102 1.13220 1.82844 1.21101 0.91360 0.79151 0.98084 0.88122 1.22345 0.96275 1.53925 0.94507 0.90880 1.26128 0.93781 0.93113 1.05564 1.70947 1.18427 1.38786 1.25808 0.83397 0.76009 0.76601 0.73817 1.22904 1.18410 1.22393 1.24260 1.05722 1.02387 0.78375 1.46037 1.15930 1.15549 1.14167 1.24299 0.99185 0.86566 1.08752 1.24287 1.00163 0.89614 1.04516 1.24369 0.85126 1.09134 1.00951 1.21480 1.01863 0.89010 1.28430 1.18751 0.78164 0.90468 0.76225 1.90989 1.65243 1.34021 1.54320 1.83408 1.25140 1.36274 1.74635 0.87517 0.88579 0.84750 0.79198 0.89906 0.87445 0.82365 0.88148 0.83742 0.87939 0.84915 0.83930 0.87338 0.87972 0.83746 0.84292 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.96 10.19 71.24 0.73 1.69 16 2 C 0.17 0.13 6.94 24.86 0.17 0.30 16 3 C -0.30 0.15 8.28 22.19 0.18 0.33 16 4 C 0.28 1.28 6.11 23.03 0.14 1.42 16 5 O -0.30 -0.38 4.77 -86.77 -0.41 -0.79 16 6 C 0.16 -0.68 1.37 29.85 0.04 -0.64 16 7 H 0.10 -1.22 3.98 -2.39 -0.01 -1.23 16 8 C -0.63 -5.61 8.11 25.60 0.21 -5.40 16 9 H 0.07 0.71 7.83 -2.91 -0.02 0.69 16 10 C 0.02 0.40 5.22 84.65 0.44 0.85 16 11 N -0.90 -18.67 13.01 21.45 0.28 -18.39 16 12 Si 1.07 18.13 29.91 68.60 2.05 20.18 16 13 H -0.30 -6.18 7.11 99.48 0.71 -5.48 16 14 H -0.26 -3.42 7.11 99.48 0.71 -2.72 16 15 H -0.30 -6.04 7.11 99.48 0.71 -5.33 16 16 C 0.01 -0.19 3.48 86.30 0.30 0.11 16 17 N -0.26 6.74 0.05 ******* -0.07 6.68 16 18 C -0.05 1.00 7.06 127.69 0.90 1.90 16 19 C -0.05 1.43 7.99 127.69 1.02 2.45 16 20 C -0.06 1.69 7.57 127.69 0.97 2.65 16 21 C -0.39 -4.41 10.01 22.72 0.23 -4.18 16 22 C 0.50 8.32 7.92 68.25 0.54 8.86 16 23 O -0.55 -13.91 17.94 18.21 0.33 -13.58 16 24 O -0.28 -3.01 9.81 22.09 0.22 -2.79 16 25 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.13 -2.07 8.06 -2.39 -0.02 -2.08 16 28 H 0.19 -1.20 5.86 -2.91 -0.02 -1.22 16 29 H 0.29 4.40 4.69 -92.70 -0.44 3.97 16 30 H 0.11 -0.74 6.06 -2.38 -0.01 -0.75 16 31 H 0.16 -2.84 8.12 -2.39 -0.02 -2.86 16 32 H 0.10 -1.67 7.93 -2.39 -0.02 -1.68 16 33 H 0.14 -4.14 7.97 -2.39 -0.02 -4.16 16 34 H 0.10 -1.64 5.28 -2.39 -0.01 -1.66 16 35 H 0.13 -4.47 8.13 -2.39 -0.02 -4.49 16 36 H 0.14 -5.14 8.06 -2.38 -0.02 -5.16 16 37 H 0.11 -3.08 8.14 -2.39 -0.02 -3.10 16 38 H 0.10 -2.74 5.87 -2.39 -0.01 -2.76 16 39 H 0.14 -5.10 8.14 -2.39 -0.02 -5.12 16 40 H 0.14 -4.67 8.14 -2.39 -0.02 -4.69 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: 0.00 -57.81 323.68 9.62 -48.19 By element: Atomic # 1 Polarization: -51.20 SS G_CDS: 1.36 Total: -49.84 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.87 Total: 10.34 kcal Atomic # 7 Polarization: -11.92 SS G_CDS: 0.21 Total: -11.71 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.13 Total: -17.16 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: 2.05 Total: 20.18 kcal Total: -57.81 9.62 -48.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226958804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.396 kcal (2) G-P(sol) polarization free energy of solvation -57.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds