Wall clock time and date at job start Tue Mar 31 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29950 * 126.28394 * 2 1 4 4 O 1.21301 * 110.25277 * 180.02562 * 3 2 1 5 5 C 1.33648 * 109.81225 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.55297 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47279 * 195.02524 * 6 5 4 8 8 N 1.46499 * 109.47317 * 315.02536 * 6 5 4 9 9 C 1.34784 * 119.99971 * 204.99987 * 8 6 5 10 10 O 1.21583 * 119.99855 * 359.72712 * 9 8 6 11 11 N 1.34771 * 119.99547 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99515 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46931 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47675 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47348 * 119.99771 * 17 15 13 20 20 H 1.48505 * 109.46905 * 239.99775 * 17 15 13 21 21 C 1.52995 * 109.47283 * 75.02632 * 6 5 4 22 22 C 1.53005 * 109.47228 * 59.99694 * 21 6 5 23 23 C 1.53000 * 109.47637 * 179.97438 * 21 6 5 24 24 N 1.31133 * 106.89302 * 0.22493 * 5 4 3 25 25 H 1.08995 * 109.47206 * 89.97945 * 1 2 3 26 26 H 1.08999 * 109.46534 * 209.97626 * 1 2 3 27 27 H 1.08996 * 109.46955 * 329.96791 * 1 2 3 28 28 H 0.96999 * 119.99984 * 24.99835 * 8 6 5 29 29 H 0.96999 * 120.00409 * 0.02562 * 11 9 8 30 30 H 1.08996 * 109.47564 * 300.00635 * 12 11 9 31 31 H 1.09000 * 109.46872 * 60.00432 * 12 11 9 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47227 * 299.99895 * 21 6 5 34 34 H 1.09007 * 109.46829 * 60.00417 * 22 21 6 35 35 H 1.08996 * 109.47630 * 180.02562 * 22 21 6 36 36 H 1.08997 * 109.46889 * 300.00240 * 22 21 6 37 37 H 1.09005 * 109.46525 * 59.99815 * 23 21 6 38 38 H 1.08993 * 109.47317 * 179.97438 * 23 21 6 39 39 H 1.08996 * 109.47073 * 300.00414 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5300 -0.6210 -0.0015 6 6 4.7971 -1.4367 -0.0029 7 1 4.5651 -2.4678 -0.2698 8 7 5.7359 -0.8789 -0.9793 9 6 6.6826 -1.6650 -1.5293 10 8 6.7605 -2.8359 -1.2113 11 7 7.5459 -1.1518 -2.4280 12 6 8.5753 -2.0062 -3.0254 13 6 9.4033 -1.1960 -3.9892 14 1 9.1849 -0.1493 -4.1413 15 6 10.4397 -1.7910 -4.6770 16 7 10.7059 -3.0655 -4.4914 17 14 11.4664 -0.7866 -5.8712 18 1 10.9674 0.6117 -5.8986 19 1 12.8857 -0.7976 -5.4345 20 1 11.3621 -1.3756 -7.2305 21 6 5.4286 -1.4003 1.3902 22 6 4.4481 -1.9830 2.4101 23 6 6.7147 -2.2290 1.3890 24 7 2.3031 -1.0840 -0.0064 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3632 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 5.6762 0.0562 -1.2301 29 1 7.4863 -0.2167 -2.6788 30 1 9.2180 -2.4041 -2.2401 31 1 8.0997 -2.8300 -3.5577 32 1 11.4353 -3.4841 -4.9750 33 1 5.6605 -0.3694 1.6572 34 1 4.2161 -3.0141 2.1431 35 1 4.8977 -1.9567 3.4026 36 1 3.5316 -1.3929 2.4111 37 1 7.4134 -1.8143 0.6624 38 1 7.1648 -2.2027 2.3813 39 1 6.4824 -3.2600 1.1222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227413764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:14 Heat of formation + Delta-G solvation = 27.616650 kcal Electronic energy + Delta-G solvation = -22306.774287 eV Core-core repulsion = 18866.764282 eV Total energy + Delta-G solvation = -3440.010005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.81176 -39.81274 -37.00461 -36.20718 -34.14456 -33.34979 -32.82857 -32.13524 -29.46343 -27.85379 -27.13604 -26.22361 -23.83551 -22.69501 -22.01915 -20.46613 -20.02535 -18.48351 -18.29754 -17.60563 -16.31033 -16.03317 -15.44388 -15.31947 -14.75991 -14.22002 -14.02297 -13.88611 -13.70291 -13.41407 -13.16101 -12.84710 -12.60895 -12.31360 -12.13570 -11.99178 -11.81881 -11.77029 -11.44690 -11.24241 -10.99595 -10.93631 -10.89218 -10.77194 -10.31352 -10.13812 -9.49114 -9.37281 -8.95914 -8.73888 -7.84353 -6.17067 -4.23459 0.88108 1.97168 2.51407 2.91981 3.23636 3.31159 3.34051 3.55531 3.79117 3.84969 4.31784 4.57308 4.65385 4.88673 4.94637 5.06940 5.11301 5.15766 5.19530 5.27933 5.38933 5.53233 5.62900 5.71692 5.78265 5.83899 5.99152 6.07965 6.29927 6.52044 6.67631 6.98985 7.43918 7.50198 7.53927 7.82380 7.93489 7.99855 8.71697 8.85727 9.23079 9.44207 10.93096 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.003588 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.510300 B = 7802.494449 C = 8504.355670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.385 5.385 4 O 0.079 5.921 5 C 0.188 3.812 6 C 0.267 3.733 7 H 0.132 0.868 8 N -0.755 5.755 9 C 0.699 3.301 10 O -0.588 6.588 11 N -0.725 5.725 12 C 0.267 3.733 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.103 4.103 22 C -0.146 4.146 23 C -0.135 4.135 24 N -0.471 5.471 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.397 0.603 29 H 0.388 0.612 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.246 6.519 11.667 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.094 5.094 4 O 0.021 5.979 5 C -0.034 4.034 6 C 0.159 3.841 7 H 0.150 0.850 8 N -0.413 5.413 9 C 0.399 3.601 10 O -0.466 6.466 11 N -0.377 5.377 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.124 4.124 22 C -0.204 4.204 23 C -0.193 4.193 24 N -0.205 5.205 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.231 0.769 29 H 0.220 0.780 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.636 5.753 11.833 21.210 hybrid contribution 0.630 1.403 -0.964 1.816 sum -16.005 7.156 10.869 20.628 Atomic orbital electron populations 1.20141 0.82848 1.04645 1.04397 1.25961 1.00655 0.83452 1.00518 1.74640 0.89345 1.23887 1.21522 1.85282 1.22437 1.24690 1.65477 1.28991 0.97053 0.82075 0.95250 1.19281 0.78757 0.95585 0.90516 0.85007 1.45148 1.35195 1.13680 1.47307 1.15949 0.79448 0.84909 0.79810 1.90906 1.74654 1.15187 1.65857 1.45752 1.34025 1.14401 1.43503 1.19022 0.83991 0.89719 0.92629 1.21261 1.15414 0.96662 1.24733 0.91880 1.24936 0.97096 0.95031 0.96931 1.69985 1.30048 1.10498 1.41683 0.86366 0.79940 0.80053 0.80568 1.19662 1.20804 1.20830 1.21627 0.97129 1.01479 0.92154 1.21836 0.98107 1.01587 0.98839 1.21835 0.95366 1.00867 1.01198 1.71916 0.99338 1.29287 1.19966 0.89253 0.88941 0.89523 0.76932 0.78008 0.95507 0.95602 0.92503 0.90494 0.91629 0.91819 0.93542 0.91527 0.93148 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.17 1.94 8.22 -156.37 -1.28 0.66 16 3 N -0.39 -4.92 12.16 30.91 0.38 -4.54 16 4 O 0.08 0.99 11.13 18.09 0.20 1.19 16 5 C 0.19 2.35 6.00 -13.06 -0.08 2.27 16 6 C 0.27 3.45 2.38 -69.09 -0.16 3.28 16 7 H 0.13 1.91 7.58 -51.92 -0.39 1.52 16 8 N -0.75 -10.61 4.96 -59.82 -0.30 -10.90 16 9 C 0.70 13.15 6.93 -86.92 -0.60 12.54 16 10 O -0.59 -12.99 13.44 5.29 0.07 -12.92 16 11 N -0.73 -14.63 5.55 -66.41 -0.37 -15.00 16 12 C 0.27 6.87 5.43 -5.19 -0.03 6.84 16 13 C -0.54 -14.41 9.28 -34.44 -0.32 -14.73 16 14 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.10 -1.19 2.68 -90.62 -0.24 -1.44 16 22 C -0.15 -1.47 8.95 37.16 0.33 -1.14 16 23 C -0.14 -1.86 7.71 37.16 0.29 -1.57 16 24 N -0.47 -6.07 11.55 -9.86 -0.11 -6.19 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.40 4.67 8.46 -40.82 -0.35 4.33 16 29 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.48 7.21 -51.93 -0.37 0.10 16 37 H 0.07 1.09 5.77 -51.93 -0.30 0.79 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.07 7.52 -51.93 -0.39 0.68 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -31.48 330.54 -6.74 -38.22 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.48 Total: 6.20 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.82 Total: 8.29 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.33 Total: -61.57 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.27 Total: -11.73 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.48 -6.74 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227413764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.834 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds