Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29950 * 126.28394 * 2 1 4 4 O 1.21301 * 110.25277 * 180.02562 * 3 2 1 5 5 C 1.33648 * 109.81225 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.55297 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47279 * 195.02524 * 6 5 4 8 8 N 1.46499 * 109.47317 * 315.02536 * 6 5 4 9 9 C 1.34784 * 119.99971 * 204.99987 * 8 6 5 10 10 O 1.21583 * 119.99855 * 359.72712 * 9 8 6 11 11 N 1.34771 * 119.99547 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99515 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46931 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00200 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00138 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47675 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47348 * 119.99771 * 17 15 13 20 20 H 1.48505 * 109.46905 * 239.99775 * 17 15 13 21 21 C 1.52995 * 109.47283 * 75.02632 * 6 5 4 22 22 C 1.53005 * 109.47228 * 59.99694 * 21 6 5 23 23 C 1.53000 * 109.47637 * 179.97438 * 21 6 5 24 24 N 1.31133 * 106.89302 * 0.22493 * 5 4 3 25 25 H 1.08995 * 109.47206 * 89.97945 * 1 2 3 26 26 H 1.08999 * 109.46534 * 209.97626 * 1 2 3 27 27 H 1.08996 * 109.46955 * 329.96791 * 1 2 3 28 28 H 0.96999 * 119.99984 * 24.99835 * 8 6 5 29 29 H 0.96999 * 120.00409 * 0.02562 * 11 9 8 30 30 H 1.08996 * 109.47564 * 300.00635 * 12 11 9 31 31 H 1.09000 * 109.46872 * 60.00432 * 12 11 9 32 32 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47227 * 299.99895 * 21 6 5 34 34 H 1.09007 * 109.46829 * 60.00417 * 22 21 6 35 35 H 1.08996 * 109.47630 * 180.02562 * 22 21 6 36 36 H 1.08997 * 109.46889 * 300.00240 * 22 21 6 37 37 H 1.09005 * 109.46525 * 59.99815 * 23 21 6 38 38 H 1.08993 * 109.47317 * 179.97438 * 23 21 6 39 39 H 1.08996 * 109.47073 * 300.00414 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5300 -0.6210 -0.0015 6 6 4.7971 -1.4367 -0.0029 7 1 4.5651 -2.4678 -0.2698 8 7 5.7359 -0.8789 -0.9793 9 6 6.6826 -1.6650 -1.5293 10 8 6.7605 -2.8359 -1.2113 11 7 7.5459 -1.1518 -2.4280 12 6 8.5753 -2.0062 -3.0254 13 6 9.4033 -1.1960 -3.9892 14 1 9.1849 -0.1493 -4.1413 15 6 10.4397 -1.7910 -4.6770 16 7 10.7059 -3.0655 -4.4914 17 14 11.4664 -0.7866 -5.8712 18 1 10.9674 0.6117 -5.8986 19 1 12.8857 -0.7976 -5.4345 20 1 11.3621 -1.3756 -7.2305 21 6 5.4286 -1.4003 1.3902 22 6 4.4481 -1.9830 2.4101 23 6 6.7147 -2.2290 1.3890 24 7 2.3031 -1.0840 -0.0064 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3632 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5143 28 1 5.6762 0.0562 -1.2301 29 1 7.4863 -0.2167 -2.6788 30 1 9.2180 -2.4041 -2.2401 31 1 8.0997 -2.8300 -3.5577 32 1 11.4353 -3.4841 -4.9750 33 1 5.6605 -0.3694 1.6572 34 1 4.2161 -3.0141 2.1431 35 1 4.8977 -1.9567 3.4026 36 1 3.5316 -1.3929 2.4111 37 1 7.4134 -1.8143 0.6624 38 1 7.1648 -2.2027 2.3813 39 1 6.4824 -3.2600 1.1222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227413764.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = 3.012719 kcal Electronic energy + Delta-G solvation = -22307.841194 eV Core-core repulsion = 18866.764282 eV Total energy + Delta-G solvation = -3441.076912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.76439 -41.27337 -38.26568 -37.15497 -36.00805 -34.72366 -34.04820 -33.72064 -30.21285 -29.49428 -28.29220 -27.55772 -24.82915 -24.55918 -23.02011 -21.99541 -21.10945 -20.02532 -19.27742 -18.75701 -17.99983 -17.48046 -16.80105 -16.66572 -16.41509 -15.58123 -15.16146 -14.94465 -14.79947 -14.50314 -14.39591 -14.00503 -13.89123 -13.69934 -13.46613 -13.21992 -12.99373 -12.86081 -12.76763 -12.73341 -12.40085 -12.20685 -12.19183 -11.97226 -11.83821 -11.40980 -11.20901 -11.03169 -10.77726 -10.31596 -9.65455 -8.25861 -6.41006 -0.10448 1.03881 1.45132 1.46184 1.48241 1.58664 1.66707 2.23713 2.39849 2.61968 2.96960 3.09669 3.43850 3.64422 3.67697 3.91412 4.18500 4.29249 4.42052 4.56334 4.57432 4.63810 4.80174 4.81251 4.89585 4.96597 5.06303 5.09902 5.11102 5.22435 5.33666 5.35555 5.47385 5.54215 5.68606 5.88644 6.15441 6.70714 6.98287 7.23449 7.29157 7.69432 8.86328 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.003588 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.510300 B = 7802.494449 C = 8504.355670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.400 5.400 4 O 0.077 5.923 5 C 0.190 3.810 6 C 0.270 3.730 7 H 0.116 0.884 8 N -0.734 5.734 9 C 0.703 3.297 10 O -0.622 6.622 11 N -0.722 5.722 12 C 0.287 3.713 13 C -0.553 4.553 14 H 0.082 0.918 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.255 1.255 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.129 4.129 24 N -0.484 5.484 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.412 0.588 29 H 0.404 0.596 30 H -0.008 1.008 31 H -0.012 1.012 32 H 0.268 0.732 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 8.664 11.953 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.110 5.110 4 O 0.021 5.979 5 C -0.031 4.031 6 C 0.162 3.838 7 H 0.133 0.867 8 N -0.393 5.393 9 C 0.403 3.597 10 O -0.503 6.503 11 N -0.375 5.375 12 C 0.164 3.836 13 C -0.591 4.591 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.805 3.195 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.116 4.116 22 C -0.197 4.197 23 C -0.187 4.187 24 N -0.219 5.219 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.248 0.752 29 H 0.239 0.761 30 H 0.010 0.990 31 H 0.006 0.994 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.777 7.965 12.146 22.956 hybrid contribution 0.873 0.704 -0.992 1.497 sum -16.904 8.668 11.154 22.029 Atomic orbital electron populations 1.20394 0.79993 1.06091 1.05643 1.26726 1.02249 0.82607 0.98999 1.74639 0.89449 1.24393 1.22538 1.85271 1.22639 1.24340 1.65629 1.28698 0.96702 0.82220 0.95523 1.19259 0.78844 0.94813 0.90853 0.86652 1.44831 1.33903 1.13879 1.46686 1.15939 0.79718 0.84660 0.79348 1.90890 1.75576 1.17040 1.66764 1.45325 1.33573 1.14624 1.43988 1.18420 0.84295 0.89519 0.91333 1.21640 1.15430 0.97511 1.24557 0.90024 1.25990 0.98474 0.96090 0.98859 1.70136 1.30926 1.12618 1.43069 0.85156 0.77812 0.78943 0.77570 1.17837 1.20494 1.20628 1.21585 0.96350 1.02074 0.91637 1.21778 0.97674 1.01160 0.99059 1.21730 0.95883 0.99741 1.01321 1.71945 0.99609 1.30048 1.20316 0.87961 0.87656 0.87918 0.75187 0.76121 0.99030 0.99404 0.92303 0.88912 0.92026 0.90074 0.93415 0.94533 0.91116 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 -0.01 16 2 C 0.17 3.56 8.22 138.46 1.14 4.69 16 3 N -0.40 -9.49 12.16 -60.28 -0.73 -10.23 16 4 O 0.08 1.80 11.13 74.79 0.83 2.63 16 5 C 0.19 4.52 6.00 88.38 0.53 5.05 16 6 C 0.27 6.85 2.38 44.24 0.11 6.96 16 7 H 0.12 3.40 7.58 -2.38 -0.02 3.38 16 8 N -0.73 -20.37 4.96 -461.42 -2.29 -22.66 16 9 C 0.70 27.02 6.93 179.05 1.24 28.26 16 10 O -0.62 -28.70 13.44 -3.98 -0.05 -28.75 16 11 N -0.72 -29.59 5.55 -482.29 -2.68 -32.27 16 12 C 0.29 15.35 5.43 85.63 0.46 15.81 16 13 C -0.55 -29.55 9.28 25.60 0.24 -29.31 16 14 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 17 Si 0.98 41.96 29.54 68.60 2.03 43.99 16 18 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 21 C -0.10 -2.12 2.68 -10.79 -0.03 -2.15 16 22 C -0.14 -2.57 8.95 71.98 0.64 -1.93 16 23 C -0.13 -3.56 7.71 71.98 0.56 -3.00 16 24 N -0.48 -11.82 11.55 -303.17 -3.50 -15.32 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.41 9.17 8.46 -92.71 -0.78 8.39 16 29 H 0.40 13.79 8.34 -92.71 -0.77 13.01 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 0.89 7.21 -2.39 -0.02 0.87 16 37 H 0.04 1.22 5.77 -2.38 -0.01 1.20 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.56 7.52 -2.39 -0.02 1.54 16 Total: -1.00 -69.64 330.54 -0.49 -70.13 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.47 Total: 22.24 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.10 Total: 25.15 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -8.92 Total: -135.38 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: 0.78 Total: -26.11 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.64 -0.49 -70.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227413764.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.140 kcal (2) G-P(sol) polarization free energy of solvation -69.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds