Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34513 * 119.49268 * 2 1 4 4 C 1.42140 * 119.12360 * 180.02562 * 3 2 1 5 5 O 1.22218 * 120.87067 * 180.02562 * 4 3 2 6 6 C 1.41133 * 118.25147 * 359.97438 * 4 3 2 7 7 C 1.35977 * 118.91539 * 0.02562 * 6 4 3 8 8 O 1.35092 * 119.61821 * 179.97438 * 7 6 4 9 9 C 1.42904 * 116.99595 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47255 * 30.00560 * 9 8 7 11 11 C 1.50701 * 109.47107 * 269.99754 * 9 8 7 12 12 H 1.08003 * 119.99400 * 120.00265 * 11 9 8 13 13 C 1.37874 * 120.00114 * 300.00567 * 11 9 8 14 14 N 1.31516 * 120.00045 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99736 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46988 * 89.99811 * 15 13 11 17 17 H 1.48496 * 109.46898 * 209.99453 * 15 13 11 18 18 H 1.48498 * 109.46976 * 329.99753 * 15 13 11 19 19 C 1.53001 * 109.46891 * 150.00085 * 9 8 7 20 20 N 1.46897 * 109.47172 * 294.16423 * 19 9 8 21 21 C 1.46898 * 109.47479 * 66.20604 * 20 19 9 22 22 C 1.46900 * 109.47197 * 186.20462 * 20 19 9 23 23 C 1.46899 * 109.46804 * 306.20117 * 20 19 9 24 24 O 1.34016 * 119.49317 * 180.27015 * 2 1 3 25 25 H 1.08998 * 109.46895 * 89.99686 * 1 2 3 26 26 H 1.08997 * 109.47012 * 210.00240 * 1 2 3 27 27 H 1.08999 * 109.47258 * 330.00510 * 1 2 3 28 28 H 1.07992 * 120.43386 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.54385 * 179.97438 * 6 4 3 30 30 H 0.96996 * 119.99326 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47097 * 174.15926 * 19 9 8 32 32 H 1.09004 * 109.47235 * 54.15944 * 19 9 8 33 33 H 1.08997 * 109.46942 * 52.64269 * 21 20 19 34 34 H 1.08992 * 109.47114 * 172.64900 * 21 20 19 35 35 H 1.09002 * 109.46770 * 292.64429 * 21 20 19 36 36 H 1.09007 * 109.47148 * 59.99855 * 22 20 19 37 37 H 1.08999 * 109.47583 * 179.97438 * 22 20 19 38 38 H 1.08998 * 109.47304 * 299.99688 * 22 20 19 39 39 H 1.09001 * 109.47097 * 60.00353 * 23 20 19 40 40 H 1.09006 * 109.47045 * 180.02562 * 23 20 19 41 41 H 1.08997 * 109.47302 * 300.00101 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1692 1.1708 0.0000 4 6 3.5906 1.1617 -0.0006 5 8 4.2244 2.2066 -0.0001 6 6 4.2506 -0.0858 -0.0005 7 6 3.5060 -1.2236 -0.0005 8 8 4.1231 -2.4253 -0.0010 9 6 3.2867 -3.5840 -0.0004 10 1 2.3520 -3.3578 -0.5136 11 6 2.9938 -3.9914 1.4206 12 1 1.9738 -4.0208 1.7746 13 6 4.0278 -4.3265 2.2688 14 7 5.2698 -4.2911 1.8376 15 14 3.6646 -4.8321 4.0301 16 1 3.4671 -6.3027 4.0921 17 1 4.8052 -4.4488 4.9003 18 1 2.4329 -4.1470 4.4977 19 6 4.0006 -4.7287 -0.7222 20 7 4.1614 -4.3876 -2.1420 21 6 5.0792 -3.2479 -2.2709 22 6 4.7109 -5.5429 -2.8639 23 6 2.8548 -4.0310 -2.7109 24 8 2.1668 -1.1665 -0.0055 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6281 2.1054 -0.0004 29 1 5.3295 -0.1360 -0.0014 30 1 5.9971 -4.5273 2.4342 31 1 3.4093 -5.6399 -0.6321 32 1 4.9812 -4.8860 -0.2731 33 1 6.0036 -3.4634 -1.7350 34 1 5.3012 -3.0775 -3.3243 35 1 4.6138 -2.3571 -1.8490 36 1 4.0299 -6.3886 -2.7683 37 1 4.8299 -5.2900 -3.9175 38 1 5.6804 -5.8076 -2.4418 39 1 2.4471 -3.1737 -2.1752 40 1 2.9741 -3.7783 -3.7645 41 1 2.1739 -4.8767 -2.6152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230897784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = 32.970046 kcal Electronic energy + Delta-G solvation = -24066.047179 eV Core-core repulsion = 20645.746735 eV Total energy + Delta-G solvation = -3420.300444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.65254 -42.78649 -39.57633 -38.89377 -35.22499 -34.36402 -33.02036 -31.66005 -30.56928 -30.41212 -28.81304 -27.97857 -25.39591 -25.04406 -23.85395 -22.52284 -20.17460 -19.27006 -18.79336 -18.67022 -18.38283 -17.88662 -17.83380 -17.50125 -16.33646 -15.88038 -15.57461 -15.35976 -15.15085 -14.95180 -14.77735 -14.53419 -14.35528 -14.28339 -14.15954 -14.08219 -13.95019 -13.85404 -13.73324 -13.70690 -13.11820 -12.94907 -12.68283 -12.30000 -12.02191 -11.52315 -11.16486 -10.39826 -10.28645 -9.99791 -9.20425 -8.01322 -6.25310 0.12375 0.18272 0.46380 1.03677 1.93255 2.03449 2.12921 2.15451 2.16327 2.20408 2.36083 2.83644 2.86639 3.00023 3.04360 3.24273 3.31620 3.45008 3.45596 3.50612 3.57250 3.61457 3.63078 3.85985 3.90410 3.99889 4.03260 4.11281 4.14702 4.28497 4.31380 4.61886 4.72460 4.83784 4.91435 5.12601 5.59348 5.81235 5.96397 6.05352 6.44533 6.94812 7.23595 7.61993 9.01569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.137 3.863 3 C -0.302 4.302 4 C 0.410 3.590 5 O -0.508 6.508 6 C -0.370 4.370 7 C 0.349 3.651 8 O -0.261 6.261 9 C 0.181 3.819 10 H 0.062 0.938 11 C -0.564 4.564 12 H 0.084 0.916 13 C 0.090 3.910 14 N -0.858 5.858 15 Si 0.909 3.091 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.265 1.265 19 C -0.003 4.003 20 N -0.275 5.275 21 C -0.046 4.046 22 C -0.040 4.040 23 C -0.048 4.048 24 O -0.245 6.245 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.284 0.716 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 -7.778 -16.054 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 C -0.322 4.322 4 C 0.302 3.698 5 O -0.396 6.396 6 C -0.392 4.392 7 C 0.254 3.746 8 O -0.175 6.175 9 C 0.128 3.872 10 H 0.080 0.920 11 C -0.600 4.600 12 H 0.102 0.898 13 C -0.122 4.122 14 N -0.491 5.491 15 Si 0.734 3.266 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.189 1.189 19 C -0.121 4.121 20 N 0.066 4.934 21 C -0.187 4.187 22 C -0.182 4.182 23 C -0.190 4.190 24 O -0.152 6.152 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.174 0.826 29 H 0.173 0.827 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.978 -7.607 -16.010 18.166 hybrid contribution -0.021 -0.333 1.151 1.198 sum -3.999 -7.939 -14.859 17.315 Atomic orbital electron populations 1.20973 0.85035 1.05688 1.04649 1.22169 0.94004 0.81541 0.93208 1.23035 0.97972 0.98619 1.12542 1.16997 0.88272 0.88972 0.75563 1.90817 1.69686 1.34526 1.44563 1.21947 1.02508 0.89995 1.24732 1.20745 0.77884 0.88321 0.87636 1.86765 1.35093 1.11190 1.84424 1.20532 0.87907 0.79978 0.98774 0.92033 1.21216 0.95278 1.50039 0.93465 0.89779 1.25133 0.94526 0.91772 1.00723 1.69578 0.99286 1.42072 1.38155 0.86224 0.79535 0.79517 0.81343 1.19407 1.19933 1.18902 1.24913 1.11504 1.02518 0.73200 1.46423 1.14433 1.15044 1.17474 1.24343 0.97234 0.90477 1.06606 1.24025 1.04672 0.89259 1.00250 1.24092 0.84576 1.07313 1.03045 1.82613 1.20590 1.34967 1.77045 0.88809 0.89228 0.88010 0.82615 0.82700 0.90551 0.85288 0.82059 0.85810 0.87636 0.85663 0.86665 0.87015 0.86339 0.86662 0.86854 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.39 10.19 36.01 0.37 0.76 16 2 C 0.14 0.03 6.95 -35.63 -0.25 -0.22 16 3 C -0.30 -0.82 9.61 -39.40 -0.38 -1.20 16 4 C 0.41 2.62 6.79 -36.99 -0.25 2.37 16 5 O -0.51 -5.36 17.91 4.72 0.08 -5.28 16 6 C -0.37 -1.68 9.94 -39.30 -0.39 -2.07 16 7 C 0.35 0.82 6.82 29.92 0.20 1.02 16 8 O -0.26 -0.34 6.21 -40.85 -0.25 -0.60 16 9 C 0.18 -0.08 1.61 -27.88 -0.04 -0.12 16 10 H 0.06 -0.17 4.75 -51.93 -0.25 -0.42 16 11 C -0.56 -3.06 8.90 -34.44 -0.31 -3.37 16 12 H 0.08 0.55 7.81 -52.48 -0.41 0.14 16 13 C 0.09 0.68 5.24 -17.82 -0.09 0.58 16 14 N -0.86 -6.35 10.94 55.43 0.61 -5.74 16 15 Si 0.91 7.18 29.54 -169.99 -5.02 2.16 16 16 H -0.27 -2.14 7.11 56.52 0.40 -1.74 16 17 H -0.27 -2.58 7.11 56.52 0.40 -2.18 16 18 H -0.26 -2.34 7.11 56.52 0.40 -1.94 16 19 C 0.00 0.02 3.58 -3.83 -0.01 0.00 16 20 N -0.28 2.98 0.05 -395.63 -0.02 2.96 16 21 C -0.05 0.43 7.28 60.06 0.44 0.87 16 22 C -0.04 0.55 8.00 60.06 0.48 1.03 16 23 C -0.05 0.59 7.49 60.06 0.45 1.04 16 24 O -0.25 -0.24 8.15 -16.71 -0.14 -0.37 16 25 H 0.09 -0.53 8.14 -51.93 -0.42 -0.95 16 26 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 27 H 0.10 -0.44 8.06 -51.93 -0.42 -0.86 16 28 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 29 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 30 H 0.28 2.32 8.31 -40.82 -0.34 1.98 16 31 H 0.13 -0.84 8.06 -51.93 -0.42 -1.26 16 32 H 0.16 -0.38 6.07 -51.93 -0.32 -0.70 16 33 H 0.12 -1.01 7.96 -51.93 -0.41 -1.42 16 34 H 0.11 -1.30 8.04 -51.93 -0.42 -1.72 16 35 H 0.13 -0.83 4.86 -51.93 -0.25 -1.09 16 36 H 0.11 -1.64 8.10 -51.93 -0.42 -2.06 16 37 H 0.11 -1.70 8.09 -51.93 -0.42 -2.12 16 38 H 0.12 -1.53 8.14 -51.93 -0.42 -1.95 16 39 H 0.11 -1.17 5.88 -51.93 -0.31 -1.48 16 40 H 0.11 -1.63 8.14 -51.93 -0.42 -2.05 16 41 H 0.12 -1.59 8.14 -51.93 -0.42 -2.01 16 LS Contribution 329.34 15.07 4.96 4.96 Total: 0.00 -20.04 329.34 -5.70 -25.74 By element: Atomic # 1 Polarization: -18.38 SS G_CDS: -6.13 Total: -24.51 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 0.21 Total: 0.69 kcal Atomic # 7 Polarization: -3.37 SS G_CDS: 0.59 Total: -2.79 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.31 Total: -6.25 kcal Atomic # 14 Polarization: 7.18 SS G_CDS: -5.02 Total: 2.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -20.04 -5.70 -25.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230897784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.706 kcal (2) G-P(sol) polarization free energy of solvation -20.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds