Wall clock time and date at job start Tue Mar 31 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46995 * 299.99651 * 3 2 1 6 6 H 1.48505 * 109.46981 * 59.99441 * 3 2 1 7 7 C 1.37872 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00367 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.53510 * 114.16996 * 179.97438 * 9 7 2 11 11 N 1.47481 * 87.93060 * 220.13108 * 10 9 7 12 12 C 1.46898 * 111.00076 * 138.69965 * 11 10 9 13 13 C 1.50700 * 109.47140 * 174.61029 * 12 11 10 14 14 C 1.38149 * 120.03500 * 106.17237 * 13 12 11 15 15 C 1.38246 * 120.06987 * 180.02562 * 14 13 12 16 16 C 1.38298 * 120.13218 * 359.95433 * 15 14 13 17 17 C 1.38104 * 120.06591 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.03677 * 286.12556 * 13 12 11 19 19 N 1.40204 * 120.05842 * 0.29596 * 18 13 12 20 20 C 1.36566 * 125.67055 * 303.17252 * 19 18 13 21 21 C 1.34849 * 108.19548 * 179.83110 * 20 19 18 22 22 C 1.40932 * 107.47122 * 0.43098 * 21 20 19 23 23 C 1.34849 * 107.46982 * 359.73250 * 22 21 20 24 24 C 1.47484 * 87.83474 * 27.00956 * 11 10 9 25 25 H 0.97000 * 120.00588 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.25273 * 312.94180 * 9 7 2 27 27 H 1.08999 * 113.47904 * 105.37032 * 10 9 7 28 28 H 1.08996 * 113.53149 * 334.90736 * 10 9 7 29 29 H 1.09001 * 109.47088 * 54.61190 * 12 11 10 30 30 H 1.08999 * 109.47259 * 294.60720 * 12 11 10 31 31 H 1.08007 * 119.96296 * 359.97438 * 14 13 12 32 32 H 1.08005 * 119.93897 * 179.97438 * 15 14 13 33 33 H 1.08002 * 119.97407 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.03458 * 179.97438 * 17 16 15 35 35 H 1.07996 * 125.90306 * 0.02562 * 20 19 18 36 36 H 1.08001 * 126.26278 * 180.16171 * 21 20 19 37 37 H 1.08007 * 126.26806 * 179.71271 * 22 21 20 38 38 H 1.08000 * 125.90216 * 179.97438 * 23 22 21 39 39 H 1.09001 * 113.47539 * 87.75545 * 24 11 10 40 40 H 1.08996 * 113.47593 * 218.22390 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2051 -4.3602 -0.9494 12 6 1.9205 -5.0901 -2.0045 13 6 0.9273 -5.8139 -2.8767 14 6 0.6513 -5.3449 -4.1464 15 6 -0.2601 -6.0080 -4.9469 16 6 -0.8976 -7.1430 -4.4799 17 6 -0.6255 -7.6170 -3.2116 18 6 0.2895 -6.9532 -2.4054 19 7 0.5636 -7.4286 -1.1152 20 6 1.7971 -7.7670 -0.6366 21 6 1.6558 -8.1747 0.6409 22 6 0.2857 -8.0950 0.9614 23 6 -0.3594 -7.6359 -0.1302 24 6 0.8517 -2.9993 -1.3947 25 1 -0.4851 0.8400 -0.0004 26 1 0.4449 -2.5306 0.7334 27 1 2.1892 -4.2509 0.9645 28 1 3.1383 -3.5667 -0.4233 29 1 2.5994 -5.8121 -1.5506 30 1 2.4909 -4.3863 -2.6106 31 1 1.1475 -4.4587 -4.5138 32 1 -0.4746 -5.6392 -5.9391 33 1 -1.6089 -7.6593 -5.1076 34 1 -1.1239 -8.5031 -2.8472 35 1 2.7257 -7.7141 -1.1854 36 1 2.4471 -8.5061 1.2970 37 1 -0.1653 -8.3545 1.9079 38 1 -1.4222 -7.4626 -0.2116 39 1 1.4935 -2.6227 -2.1912 40 1 -0.2089 -2.8757 -1.6131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232909744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:29 Heat of formation + Delta-G solvation = 121.516562 kcal Electronic energy + Delta-G solvation = -21728.405629 eV Core-core repulsion = 18703.316692 eV Total energy + Delta-G solvation = -3025.088936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35325 -39.23445 -38.35679 -33.31954 -32.76527 -31.97730 -29.18859 -28.56129 -28.13253 -25.60681 -24.73471 -23.02749 -22.82330 -21.06733 -20.02263 -19.88173 -18.60423 -17.94825 -16.66962 -15.95796 -15.75098 -14.80430 -14.69885 -14.32005 -14.11948 -13.90176 -13.68124 -13.33470 -13.28153 -12.72223 -12.47792 -12.13892 -12.04186 -11.89973 -11.76264 -11.46724 -11.29580 -11.04992 -10.92391 -10.56125 -10.29892 -9.78336 -9.35592 -9.22908 -8.96195 -8.74903 -8.44618 -8.08698 -7.96911 -7.86744 -6.06119 -4.10770 1.10520 1.29360 2.59509 3.17927 3.26558 3.33213 3.34993 3.38463 3.65194 4.39196 4.73510 4.77548 4.92595 5.10661 5.16869 5.25041 5.27687 5.40182 5.44291 5.61103 5.65300 5.76289 5.83694 5.95346 5.98710 6.09919 6.23213 6.34315 6.38829 6.42749 6.50845 6.51604 6.59225 6.70670 6.73003 6.80079 7.13827 7.18461 7.23711 7.48135 7.72747 7.77697 7.90561 8.07100 8.37116 8.92917 9.54336 11.03473 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.004871 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.829064 B = 5746.619807 C = 6693.211682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.001 4.001 11 N -0.467 5.467 12 C 0.050 3.950 13 C -0.057 4.057 14 C -0.101 4.101 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.120 4.120 18 C 0.134 3.866 19 N -0.388 5.388 20 C -0.007 4.007 21 C -0.196 4.196 22 C -0.201 4.201 23 C 0.007 3.993 24 C 0.006 3.994 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.051 0.949 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -15.451 -7.370 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.130 4.130 11 N -0.189 5.189 12 C -0.078 4.078 13 C -0.058 4.058 14 C -0.120 4.120 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.140 4.140 18 C 0.044 3.956 19 N -0.060 5.060 20 C -0.135 4.135 21 C -0.221 4.221 22 C -0.225 4.225 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.069 0.931 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.585 -15.710 -7.445 17.394 hybrid contribution 1.034 1.523 -0.463 1.898 sum 0.449 -14.187 -7.908 16.248 Atomic orbital electron populations 1.69983 1.06002 1.26610 1.49748 1.25018 0.94799 0.99150 0.94626 0.86572 0.80180 0.83813 0.77656 1.19720 1.21019 1.20874 1.21067 0.92740 0.90247 1.51260 0.92419 1.20068 0.94259 0.90783 0.92467 1.23963 0.95513 0.97511 0.95979 1.68969 1.26881 1.13831 1.09263 1.21714 0.93991 0.98015 0.94123 1.19918 0.98399 0.92805 0.94699 1.21049 0.98180 0.99672 0.93147 1.21189 0.96588 0.95670 1.00007 1.20957 1.00147 0.96958 0.95282 1.21068 0.98810 0.99974 0.94118 1.17530 0.99329 0.94488 0.84268 1.41235 1.07321 1.49025 1.08395 1.21643 0.87984 1.07588 0.96248 1.20786 0.96734 1.09217 0.95315 1.20787 0.94086 1.09273 0.98386 1.21764 0.94903 1.06891 0.88530 1.24094 1.00011 0.86922 1.01298 0.92934 0.91911 0.91908 0.93020 0.90434 0.93328 0.85386 0.85651 0.85542 0.85609 0.82951 0.85005 0.84934 0.82698 0.93072 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.26 55.43 0.74 -24.99 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.06 8.83 -34.44 -0.30 -14.37 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 1.10 3.76 -91.24 -0.34 0.76 16 10 C 0.00 -0.02 7.28 -7.55 -0.05 -0.08 16 11 N -0.47 -9.56 6.32 -246.10 -1.56 -11.11 16 12 C 0.05 0.85 4.29 -4.98 -0.02 0.83 16 13 C -0.06 -0.88 5.42 -104.44 -0.57 -1.45 16 14 C -0.10 -1.39 9.66 -39.61 -0.38 -1.77 16 15 C -0.12 -1.34 10.04 -39.56 -0.40 -1.74 16 16 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 17 C -0.12 -1.51 9.77 -39.41 -0.38 -1.90 16 18 C 0.13 2.01 5.85 -83.59 -0.49 1.52 16 19 N -0.39 -5.94 2.57 -60.93 -0.16 -6.10 16 20 C -0.01 -0.10 9.36 -16.65 -0.16 -0.26 16 21 C -0.20 -2.84 10.86 -39.76 -0.43 -3.27 16 22 C -0.20 -2.95 10.86 -39.76 -0.43 -3.38 16 23 C 0.01 0.11 11.21 -16.64 -0.19 -0.08 16 24 C 0.01 0.13 7.24 -7.55 -0.05 0.08 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 29 H 0.08 1.26 5.45 -51.93 -0.28 0.98 16 30 H 0.05 0.82 7.19 -51.93 -0.37 0.45 16 31 H 0.13 1.64 7.99 -52.48 -0.42 1.22 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.15 1.98 7.24 -52.49 -0.38 1.60 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.05 1.17 7.43 -51.93 -0.39 0.79 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -29.88 334.98 -11.25 -41.13 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.60 Total: 4.98 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -4.70 Total: -24.99 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.98 Total: -42.20 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.88 -11.25 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232909744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.643 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds