Wall clock time and date at job start Tue Mar 31 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38438 * 120.46984 * 2 1 4 4 C 1.38738 * 118.51422 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.31668 * 180.02562 * 4 3 2 6 6 N 1.46506 * 109.47471 * 89.99755 * 5 4 3 7 7 C 1.46496 * 119.99966 * 270.00222 * 6 5 4 8 8 C 1.36933 * 119.99477 * 89.99482 * 6 5 4 9 9 H 1.07999 * 120.00894 * 17.84686 * 8 6 5 10 10 C 1.38817 * 119.99749 * 197.83923 * 8 6 5 11 11 N 1.31623 * 119.99693 * 16.24116 * 10 8 6 12 12 Si 1.86800 * 120.00126 * 196.24611 * 10 8 6 13 13 H 1.48499 * 109.47541 * 94.97307 * 12 10 8 14 14 H 1.48506 * 109.46895 * 214.97502 * 12 10 8 15 15 H 1.48504 * 109.47117 * 334.97212 * 12 10 8 16 16 C 1.38291 * 119.36474 * 359.97438 * 4 3 2 17 17 N 1.31735 * 120.89274 * 0.02562 * 16 4 3 18 18 C 1.32682 * 121.61384 * 359.70024 * 17 16 4 19 19 C 1.48340 * 119.72722 * 180.29012 * 18 17 16 20 20 C 1.39358 * 120.12402 * 44.58626 * 19 18 17 21 21 C 1.38009 * 119.87489 * 179.72449 * 20 19 18 22 22 C 1.38321 * 120.12783 * 0.57535 * 21 20 19 23 23 C 1.38328 * 120.24357 * 359.70167 * 22 21 20 24 24 C 1.38012 * 120.12367 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47020 * 95.07079 * 1 2 3 26 26 H 1.09003 * 109.47227 * 335.07198 * 1 2 3 27 27 H 1.09001 * 109.47582 * 215.06795 * 1 2 3 28 28 H 1.08001 * 120.73824 * 359.97121 * 3 2 1 29 29 H 1.09003 * 109.47115 * 209.99960 * 5 4 3 30 30 H 1.09006 * 109.47086 * 329.99768 * 5 4 3 31 31 H 1.09002 * 109.47161 * 95.21412 * 7 6 5 32 32 H 1.08998 * 109.47068 * 215.21367 * 7 6 5 33 33 H 1.08999 * 109.47021 * 335.21830 * 7 6 5 34 34 H 0.96997 * 119.99465 * 179.97438 * 11 10 8 35 35 H 1.08004 * 119.55398 * 180.02562 * 16 4 3 36 36 H 1.07996 * 120.06283 * 0.02562 * 20 19 18 37 37 H 1.08011 * 119.94075 * 180.29919 * 21 20 19 38 38 H 1.07997 * 119.88044 * 179.71994 * 22 21 20 39 39 H 1.08000 * 119.93674 * 180.02562 * 23 22 21 40 40 H 1.08006 * 120.06191 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1932 0.0000 4 6 3.5956 1.1458 -0.0005 5 6 4.4002 2.4200 0.0000 6 7 4.6614 2.8321 1.3814 7 6 3.7193 3.7155 2.0729 8 6 5.7862 2.3913 2.0262 9 1 6.6129 1.9915 1.4578 10 6 5.8639 2.4586 3.4106 11 7 4.7716 2.6360 4.1231 12 14 7.5187 2.2975 4.2621 13 1 8.0772 3.6493 4.5187 14 1 7.3444 1.5810 5.5512 15 1 8.4502 1.5338 3.3934 16 6 4.2322 -0.0818 -0.0005 17 7 3.5400 -1.2027 -0.0005 18 6 2.2132 -1.2007 0.0054 19 6 1.4757 -2.4878 0.0117 20 6 1.8767 -3.5195 0.8585 21 6 1.1834 -4.7128 0.8642 22 6 0.0997 -4.8902 0.0231 23 6 -0.2992 -3.8717 -0.8236 24 6 0.3827 -2.6718 -0.8330 25 1 -0.3633 -0.0908 -1.0237 26 1 -0.3634 0.9319 0.4331 27 1 -0.3634 -0.8411 0.5904 28 1 1.6888 2.1397 -0.0005 29 1 5.3465 2.2524 -0.5143 30 1 3.8415 3.2028 -0.5131 31 1 3.0245 3.1164 2.6615 32 1 4.2685 4.3875 2.7324 33 1 3.1639 4.2999 1.3393 34 1 4.8259 2.6826 5.0905 35 1 5.3114 -0.1222 -0.0005 36 1 2.7253 -3.3837 1.5124 37 1 1.4902 -5.5113 1.5236 38 1 -0.4371 -5.8273 0.0277 39 1 -1.1462 -4.0154 -1.4780 40 1 0.0701 -1.8770 -1.4942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238614216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:06 Heat of formation + Delta-G solvation = 78.700347 kcal Electronic energy + Delta-G solvation = -21279.739779 eV Core-core repulsion = 18252.794192 eV Total energy + Delta-G solvation = -3026.945587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.14190 -38.54495 -35.79654 -33.47055 -32.84916 -31.18706 -30.81429 -29.55967 -27.07779 -26.17767 -25.66366 -23.30722 -22.40016 -21.76406 -21.25943 -19.97096 -17.27085 -16.86867 -16.08921 -15.85297 -15.02523 -14.74208 -14.53612 -14.15900 -13.88808 -13.59131 -13.39247 -13.12006 -12.94163 -12.68726 -12.54824 -12.38093 -12.19499 -11.96037 -11.53956 -11.21095 -10.99099 -10.93757 -10.77730 -10.64760 -10.46258 -10.06111 -9.94851 -9.20195 -9.00850 -8.88351 -8.82884 -8.59391 -7.89176 -6.91547 -5.81766 -3.20673 1.03910 1.46271 1.78939 1.99822 3.35497 3.42111 3.43627 3.81749 4.30849 4.48543 4.54098 4.93441 4.98207 5.08009 5.16235 5.24385 5.37076 5.42186 5.48581 5.59743 5.61828 5.66575 5.72464 5.81878 5.85042 5.97050 6.05762 6.09276 6.22454 6.43008 6.49369 6.52428 6.54981 6.61956 6.65546 6.76427 6.96836 7.03142 7.29417 7.31736 7.63241 7.74453 8.27356 8.51991 9.13094 9.76237 10.22872 11.23088 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021635 B = 0.004336 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.896246 B = 6455.319343 C = 7101.258586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.120 4.120 5 C 0.183 3.817 6 N -0.588 5.588 7 C 0.162 3.838 8 C -0.255 4.255 9 H 0.074 0.926 10 C 0.003 3.997 11 N -0.902 5.902 12 Si 0.906 3.094 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.277 1.277 16 C 0.108 3.892 17 N -0.473 5.473 18 C 0.128 3.872 19 C -0.022 4.022 20 C -0.088 4.088 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.106 4.106 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.049 0.951 33 H -0.001 1.001 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 -8.413 -9.681 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.102 4.102 4 C -0.126 4.126 5 C 0.055 3.945 6 N -0.308 5.308 7 C 0.017 3.983 8 C -0.385 4.385 9 H 0.092 0.908 10 C -0.196 4.196 11 N -0.546 5.546 12 Si 0.736 3.264 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.051 4.051 17 N -0.181 5.181 18 C -0.009 4.009 19 C -0.022 4.022 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.125 4.125 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.169 0.831 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.750 -9.120 -9.457 16.361 hybrid contribution 0.401 0.608 0.870 1.135 sum -9.349 -8.512 -8.587 15.283 Atomic orbital electron populations 1.20837 0.91070 1.02824 1.01697 1.20649 0.96660 0.93326 1.02055 1.21194 0.93823 0.97175 0.98016 1.22246 0.94828 0.99412 0.96162 1.19946 0.96367 0.89876 0.88324 1.44268 1.24162 1.52191 1.10223 1.20859 0.92213 0.92131 0.93075 1.19314 0.91857 1.37964 0.89317 0.90787 1.24987 0.97153 1.01002 0.96497 1.70118 1.25660 1.53507 1.05303 0.86203 0.83418 0.77685 0.79099 1.21404 1.21762 1.20253 1.22463 0.99832 0.86884 0.95943 1.67597 1.07007 1.31702 1.11765 1.19401 0.89528 0.91172 1.00834 1.18503 0.94767 0.92246 0.96731 1.21289 0.98968 0.92290 0.98080 1.21097 0.96177 0.97414 0.99531 1.21156 0.97375 0.98895 0.96669 1.21007 1.00209 0.93470 0.99720 1.21293 0.95169 0.97599 0.98463 0.91425 0.91703 0.91252 0.85650 0.92324 0.93096 0.95415 0.93214 0.98216 0.93620 0.83120 0.85618 0.86063 0.86342 0.86101 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.33 36.01 0.30 -1.08 16 2 C -0.12 -2.10 5.87 -104.15 -0.61 -2.71 16 3 C -0.08 -1.35 9.51 -39.32 -0.37 -1.72 16 4 C -0.12 -2.35 5.48 -104.42 -0.57 -2.93 16 5 C 0.18 3.63 5.85 -5.19 -0.03 3.60 16 6 N -0.59 -14.38 2.91 -182.50 -0.53 -14.91 16 7 C 0.16 3.91 9.02 59.84 0.54 4.45 16 8 C -0.26 -6.84 9.70 -15.06 -0.15 -6.98 16 9 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 10 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 11 N -0.90 -26.15 10.60 55.49 0.59 -25.56 16 12 Si 0.91 21.74 29.58 -169.99 -5.03 16.71 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.11 2.16 10.85 -17.57 -0.19 1.97 16 17 N -0.47 -9.40 10.17 -9.78 -0.10 -9.50 16 18 C 0.13 2.30 6.36 -82.95 -0.53 1.77 16 19 C -0.02 -0.34 5.05 -104.91 -0.53 -0.87 16 20 C -0.09 -1.31 9.66 -39.25 -0.38 -1.69 16 21 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 22 C -0.12 -1.32 10.04 -39.52 -0.40 -1.72 16 23 C -0.13 -1.37 10.03 -39.63 -0.40 -1.76 16 24 C -0.11 -1.35 7.84 -39.25 -0.31 -1.66 16 25 H 0.07 0.72 6.97 -51.93 -0.36 0.36 16 26 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 27 H 0.07 0.89 6.62 -51.93 -0.34 0.54 16 28 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.06 1.10 7.98 -51.93 -0.41 0.69 16 30 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 31 H 0.03 0.73 7.46 -51.93 -0.39 0.35 16 32 H 0.05 1.29 7.08 -51.93 -0.37 0.92 16 33 H 0.00 -0.01 7.83 -51.93 -0.41 -0.42 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.15 2.89 8.06 -52.48 -0.42 2.47 16 36 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.41 6.10 -52.48 -0.32 1.09 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -30.85 333.70 -9.66 -40.51 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.51 Total: 0.98 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -4.11 Total: -13.25 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.04 Total: -49.98 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.85 -9.66 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238614216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.213 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds