Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31076 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48497 * 109.46862 * 270.00454 * 3 2 1 5 5 H 1.48494 * 109.46743 * 30.00257 * 3 2 1 6 6 H 1.48498 * 109.47058 * 150.00449 * 3 2 1 7 7 C 1.39681 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.40979 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.39012 * 126.93187 * 359.97438 * 9 7 2 11 11 N 1.35578 * 109.23208 * 180.02562 * 10 9 7 12 12 H 0.97000 * 124.70071 * 180.02562 * 11 10 9 13 13 C 1.38181 * 110.58846 * 0.02562 * 11 10 9 14 14 C 1.39168 * 132.72014 * 180.02562 * 13 11 10 15 15 C 1.38035 * 120.28463 * 179.97438 * 14 13 11 16 16 C 1.38299 * 120.79844 * 359.97438 * 15 14 13 17 17 C 1.39355 * 120.07846 * 359.97438 * 16 15 14 18 18 C 1.47575 * 120.30025 * 179.97438 * 17 16 15 19 19 C 1.31687 * 117.87381 * 105.05120 * 18 17 16 20 20 C 1.50219 * 122.66675 * 175.57365 * 19 18 17 21 21 C 1.53280 * 110.42202 * 50.44229 * 20 19 18 22 22 N 1.46553 * 107.90276 * 267.26808 * 21 20 19 23 23 C 1.47033 * 111.23516 * 32.92991 * 22 21 20 24 24 C 1.50124 * 117.87717 * 284.78812 * 18 17 16 25 25 C 1.40209 * 107.88918 * 359.97438 * 13 11 10 26 26 H 0.97005 * 120.00345 * 359.97438 * 1 2 3 27 27 H 1.08001 * 125.38551 * 359.95603 * 10 9 7 28 28 H 1.07995 * 119.85950 * 0.02562 * 14 13 11 29 29 H 1.08004 * 119.60173 * 179.72094 * 15 14 13 30 30 H 1.07994 * 119.96171 * 179.97438 * 16 15 14 31 31 H 1.07994 * 118.67035 * 355.59052 * 19 18 17 32 32 H 1.09005 * 109.31633 * 170.73433 * 20 19 18 33 33 H 1.09005 * 109.31404 * 290.34680 * 20 19 18 34 34 H 1.09001 * 109.77557 * 26.86707 * 21 20 19 35 35 H 1.09003 * 109.77792 * 147.66445 * 21 20 19 36 36 H 1.00903 * 110.99952 * 268.80819 * 22 21 20 37 37 H 1.09005 * 109.69899 * 180.02562 * 23 22 21 38 38 H 1.08997 * 109.69714 * 300.59934 * 23 22 21 39 39 H 1.08995 * 109.18088 * 330.26264 * 24 18 17 40 40 H 1.08998 * 109.18012 * 89.50035 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.4922 2.0464 -1.4001 5 1 1.4423 2.6526 0.7001 6 1 3.5424 1.4401 0.6999 7 6 2.0091 -1.2097 -0.0005 8 1 3.0891 -1.2097 -0.0010 9 6 1.3042 -2.4306 -0.0005 10 6 -0.0758 -2.5983 0.0005 11 7 -0.3647 -3.9229 0.0007 12 1 -1.2615 -4.2925 0.0009 13 6 0.7956 -4.6733 0.0004 14 6 1.0332 -6.0446 0.0000 15 6 2.3265 -6.5270 -0.0007 16 6 3.4051 -5.6614 -0.0016 17 6 3.1951 -4.2838 -0.0023 18 6 4.3425 -3.3557 -0.0027 19 6 4.6312 -2.7341 -1.1271 20 6 5.7124 -1.6958 -1.2251 21 6 7.0172 -2.2235 -0.6180 22 7 7.0572 -1.8148 0.7888 23 6 5.7077 -1.7778 1.3712 24 6 5.1012 -3.1770 1.2804 25 6 1.8819 -3.7868 -0.0006 26 1 -0.4851 0.8401 0.0004 27 1 -0.8029 -1.7996 0.0020 28 1 0.2021 -6.7342 -0.0006 29 1 2.4981 -7.5933 0.0035 30 1 4.4113 -6.0536 -0.0017 31 1 4.0676 -2.9804 -2.0148 32 1 5.8779 -1.4453 -2.2730 33 1 5.4030 -0.8010 -0.6850 34 1 7.0427 -3.3111 -0.6869 35 1 7.8693 -1.7997 -1.1496 36 1 7.5209 -0.9248 0.8937 37 1 5.7664 -1.4711 2.4156 38 1 5.0871 -1.0746 0.8159 39 1 4.4244 -3.3301 2.1209 40 1 5.9026 -3.9142 1.3282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238946799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = 54.263998 kcal Electronic energy + Delta-G solvation = -22401.679079 eV Core-core repulsion = 19373.673853 eV Total energy + Delta-G solvation = -3028.005226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46864 -39.95299 -37.41671 -35.55036 -34.48954 -32.48097 -31.74050 -30.04159 -29.41101 -27.10611 -26.34403 -25.85934 -23.02944 -22.18372 -21.29920 -21.03260 -19.65733 -18.46390 -17.75837 -17.43820 -16.99997 -16.20374 -16.03900 -15.93903 -15.16773 -14.86392 -14.72692 -14.35858 -14.33467 -13.84853 -13.73391 -13.35313 -13.22540 -12.98156 -12.95757 -12.53914 -12.49598 -12.43532 -12.27182 -11.89399 -11.83897 -11.59367 -11.46002 -11.22929 -11.05805 -9.98260 -9.55860 -9.16767 -8.70709 -8.34958 -8.33462 -5.88991 0.49060 1.03307 1.33763 1.37383 1.45626 1.48244 2.29080 2.33707 2.92768 3.12388 3.38537 3.70481 3.85743 4.07965 4.20748 4.29002 4.34345 4.38212 4.40714 4.49264 4.63297 4.69958 4.82959 4.84938 4.92199 5.04693 5.08309 5.14433 5.18434 5.29581 5.35172 5.41701 5.50889 5.70169 5.76213 5.92508 6.00406 6.03143 6.07840 6.24058 6.33725 6.60457 6.61509 6.86909 7.20149 7.29813 7.45147 8.64269 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.010243 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.631144 B = 2732.825733 C = 4879.018898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.430 4.430 8 H 0.083 0.917 9 C -0.016 4.016 10 C -0.117 4.117 11 N -0.589 5.589 12 H 0.408 0.592 13 C 0.070 3.930 14 C -0.159 4.159 15 C -0.104 4.104 16 C -0.176 4.176 17 C -0.017 4.017 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.120 4.120 21 C 0.069 3.931 22 N -0.686 5.686 23 C 0.054 3.946 24 C -0.061 4.061 25 C -0.150 4.150 26 H 0.274 0.726 27 H 0.177 0.823 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.348 0.652 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -4.725 0.002 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.101 0.899 9 C -0.022 4.022 10 C -0.241 4.241 11 N -0.193 5.193 12 H 0.244 0.756 13 C -0.041 4.041 14 C -0.181 4.181 15 C -0.123 4.123 16 C -0.196 4.196 17 C -0.017 4.017 18 C -0.069 4.069 19 C -0.164 4.164 20 C -0.159 4.159 21 C -0.060 4.060 22 N -0.317 5.317 23 C -0.075 4.075 24 C -0.098 4.098 25 C -0.157 4.157 26 H 0.084 0.916 27 H 0.193 0.807 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.325 -5.115 0.243 10.638 hybrid contribution -1.419 1.566 -0.566 2.187 sum 7.906 -3.549 -0.323 8.672 Atomic orbital electron populations 1.69570 1.08229 1.28315 1.43448 1.26423 0.95576 1.03418 0.94451 0.85370 0.79195 0.77511 0.78777 1.19700 1.20156 1.18138 1.19188 0.94713 0.89466 1.42923 0.89945 1.18467 0.91286 0.90695 1.01716 1.23197 0.98011 0.83183 1.19726 1.41379 1.06027 1.05626 1.66276 0.75613 1.18651 0.86864 0.93272 1.05286 1.20233 0.98330 0.90459 1.09061 1.20845 0.90901 1.00048 1.00489 1.21006 0.99332 0.91248 1.07995 1.18672 0.90823 0.93670 0.98583 1.19812 0.94379 0.97501 0.95230 1.22280 0.99227 0.98246 0.96682 1.21243 0.95264 0.97026 1.02328 1.22127 0.95337 1.01123 0.87434 1.60585 1.17984 1.36152 1.16938 1.22038 0.89400 0.96310 0.99748 1.20213 0.97899 0.97864 0.93862 1.19714 0.92477 0.94185 1.09333 0.91604 0.80703 0.85164 0.83290 0.85129 0.90432 0.90440 0.91692 0.91224 0.88723 0.83369 0.89900 0.95009 0.92665 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.71 10.33 21.79 0.23 -46.48 16 2 C 0.01 0.38 5.49 85.15 0.47 0.85 16 3 Si 0.97 40.68 29.56 68.60 2.03 42.71 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.43 -23.52 8.92 23.29 0.21 -23.31 16 8 H 0.08 4.31 4.34 -2.91 -0.01 4.30 16 9 C -0.02 -0.89 6.10 -20.00 -0.12 -1.02 16 10 C -0.12 -6.22 10.89 84.30 0.92 -5.30 16 11 N -0.59 -26.63 5.99 -184.95 -1.11 -27.74 16 12 H 0.41 15.07 8.96 -92.71 -0.83 14.24 16 13 C 0.07 3.16 7.23 38.84 0.28 3.44 16 14 C -0.16 -5.85 10.06 22.45 0.23 -5.63 16 15 C -0.10 -3.44 9.99 22.24 0.22 -3.22 16 16 C -0.18 -6.37 9.78 22.55 0.22 -6.15 16 17 C -0.02 -0.73 4.98 -20.01 -0.10 -0.83 16 18 C -0.07 -2.68 3.64 -18.26 -0.07 -2.74 16 19 C -0.15 -5.51 7.45 24.86 0.19 -5.32 16 20 C -0.12 -3.64 5.44 29.79 0.16 -3.47 16 21 C 0.07 1.67 6.44 86.46 0.56 2.23 16 22 N -0.69 -16.99 6.79 -514.30 -3.49 -20.48 16 23 C 0.05 1.66 6.23 86.20 0.54 2.19 16 24 C -0.06 -2.07 5.27 29.59 0.16 -1.92 16 25 C -0.15 -7.49 6.18 -19.85 -0.12 -7.62 16 26 H 0.27 13.72 8.30 -92.70 -0.77 12.95 16 27 H 0.18 9.76 5.68 -2.91 -0.02 9.75 16 28 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.08 3.25 7.96 -2.91 -0.02 3.23 16 32 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 33 H 0.06 2.16 5.84 -2.38 -0.01 2.15 16 34 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.35 7.12 8.90 -89.69 -0.80 6.32 16 37 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.03 1.15 4.43 -2.39 -0.01 1.14 16 39 H 0.05 2.03 8.05 -2.39 -0.02 2.01 16 40 H 0.09 2.75 7.95 -2.39 -0.02 2.73 16 Total: -1.00 -63.07 314.76 0.84 -62.22 By element: Atomic # 1 Polarization: 48.13 SS G_CDS: -0.54 Total: 47.59 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 3.73 Total: -57.82 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -4.37 Total: -94.70 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -63.07 0.84 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238946799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.486 kcal (2) G-P(sol) polarization free energy of solvation -63.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds