Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38040 * 120.06047 * 359.72709 * 4 3 2 6 6 C 1.38299 * 120.12025 * 179.69845 * 5 4 3 7 7 C 1.38348 * 120.24406 * 0.60209 * 6 5 4 8 8 C 1.38006 * 120.11796 * 359.67605 * 7 6 5 9 9 C 1.39315 * 120.05813 * 180.02562 * 4 3 2 10 10 C 1.48380 * 120.12330 * 0.02562 * 9 4 3 11 11 C 1.39340 * 120.12291 * 309.72390 * 10 9 4 12 12 C 1.38023 * 119.87866 * 179.69836 * 11 10 9 13 13 C 1.38322 * 120.11927 * 0.59862 * 12 11 10 14 14 C 1.50695 * 119.87446 * 179.69630 * 13 12 11 15 15 C 1.50696 * 109.47450 * 269.97711 * 14 13 12 16 16 H 1.08003 * 120.00098 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00440 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00399 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99717 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46884 * 90.00536 * 19 17 15 21 21 H 1.48495 * 109.47367 * 209.99922 * 19 17 15 22 22 H 1.48501 * 109.47528 * 330.00774 * 19 17 15 23 23 C 1.38324 * 120.24502 * 359.67805 * 13 12 11 24 24 C 1.38017 * 120.12040 * 0.02562 * 23 13 12 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.08001 * 119.94297 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.88315 * 180.29532 * 6 5 4 32 32 H 1.07991 * 119.94460 * 179.69977 * 7 6 5 33 33 H 1.07996 * 120.05985 * 180.02562 * 8 7 6 34 34 H 1.07997 * 120.05645 * 0.02562 * 11 10 9 35 35 H 1.07993 * 119.93832 * 180.32027 * 12 11 10 36 36 H 1.08990 * 109.47229 * 29.98475 * 14 13 12 37 37 H 1.09008 * 109.46989 * 149.98344 * 14 13 12 38 38 H 0.96998 * 120.00231 * 179.97438 * 18 17 15 39 39 H 1.07994 * 119.93840 * 179.97438 * 23 13 12 40 40 H 1.07999 * 120.06255 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1075 -0.0592 0.0046 6 6 5.4861 -0.1699 -0.0023 7 6 6.2764 0.9656 -0.0019 8 6 5.6921 2.2159 -0.0013 9 6 4.3035 2.3333 -0.0002 10 6 3.6696 3.6749 0.0014 11 6 2.6738 3.9790 -0.9245 12 6 2.0832 5.2264 -0.9144 13 6 2.4869 6.1781 0.0046 14 6 1.8431 7.5406 0.0062 15 6 2.6119 8.4606 -0.9067 16 1 3.4797 8.0951 -1.4357 17 6 2.2076 9.7690 -1.0669 18 7 2.8782 10.5717 -1.8640 19 14 0.7062 10.4010 -0.1526 20 1 1.1228 10.9516 1.1622 21 1 0.0531 11.4687 -0.9517 22 1 -0.2508 9.2853 0.0588 23 6 3.4790 5.8836 0.9224 24 6 4.0721 4.6374 0.9252 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.4954 -0.9490 0.0095 31 1 5.9475 -1.1464 -0.0030 32 1 7.3523 0.8736 -0.0023 33 1 6.3099 3.1017 -0.0014 34 1 2.3610 3.2381 -1.6453 35 1 1.3077 5.4614 -1.6283 36 1 0.8146 7.4569 -0.3445 37 1 1.8501 7.9445 1.0187 38 1 2.5935 11.4921 -1.9769 39 1 3.7907 6.6305 1.6374 40 1 4.8464 4.4083 1.6425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239952072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = -5.628842 kcal Electronic energy + Delta-G solvation = -20795.678857 eV Core-core repulsion = 17732.783731 eV Total energy + Delta-G solvation = -3062.895126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.97493 -38.30431 -37.57798 -33.88181 -32.43939 -31.82599 -30.39398 -30.19039 -27.63167 -26.90974 -25.56258 -23.50310 -22.24296 -21.63594 -21.07609 -20.02519 -17.12305 -16.81732 -16.55741 -16.08437 -15.85951 -15.03425 -14.84819 -14.56306 -14.31498 -14.16108 -14.04274 -13.28819 -13.02378 -12.88684 -12.70060 -12.42393 -12.33991 -12.04399 -11.73402 -11.67402 -11.41498 -11.05582 -10.88102 -10.73906 -10.35166 -10.10561 -10.01734 -9.92298 -9.43678 -8.90882 -8.68170 -8.62722 -8.43253 -7.65542 -6.11503 -4.11220 1.09852 1.39938 1.91921 2.06455 3.25106 3.33250 3.35270 3.56209 3.75508 4.32774 4.37366 4.75896 4.80455 5.01574 5.06001 5.10149 5.15162 5.19445 5.23524 5.39153 5.41793 5.44337 5.48457 5.54805 5.64888 5.77301 5.88719 6.01313 6.08111 6.11642 6.31137 6.45978 6.48754 6.54397 6.60468 6.87794 6.91946 6.95577 6.96552 7.02744 7.06533 7.50695 7.51585 7.65877 8.44702 8.93588 9.48321 11.01379 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.003809 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.142787 B = 7350.016448 C = 8272.149320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.099 3.901 4 C -0.082 4.082 5 C -0.098 4.098 6 C -0.130 4.130 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.023 4.023 10 C -0.087 4.087 11 C -0.110 4.110 12 C -0.121 4.121 13 C -0.021 4.021 14 C 0.012 3.988 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.121 4.121 24 C -0.102 4.102 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.121 0.879 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -20.972 5.080 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C 0.023 3.977 4 C -0.082 4.082 5 C -0.116 4.116 6 C -0.148 4.148 7 C -0.138 4.138 8 C -0.128 4.128 9 C -0.023 4.023 10 C -0.087 4.087 11 C -0.128 4.128 12 C -0.139 4.139 13 C -0.021 4.021 14 C -0.025 4.025 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.107 -20.945 5.005 21.535 hybrid contribution -0.817 0.805 0.325 1.192 sum -0.925 -20.140 5.329 20.854 Atomic orbital electron populations 1.22735 0.80782 1.02628 1.00325 1.87792 1.19783 1.27939 1.95564 1.21473 0.90213 0.84402 1.01585 1.19660 0.93815 0.93036 1.01730 1.20893 0.94442 0.97263 0.99007 1.21155 0.93780 0.98408 1.01410 1.21090 0.99732 0.92467 1.00496 1.21212 0.93584 0.97748 1.00228 1.18594 0.92822 0.91549 0.99319 1.18531 0.98910 0.92565 0.98684 1.21105 0.96503 0.96968 0.98224 1.20999 1.01010 0.92730 0.99173 1.20383 0.93775 0.95922 0.92037 1.18847 0.96313 0.89529 0.97802 1.20913 1.13698 0.94391 1.26229 0.90791 1.24999 0.96639 0.96647 0.94916 1.69897 1.40027 1.06369 1.37417 0.86806 0.83705 0.78927 0.80075 1.20129 1.21207 1.18949 1.21021 0.97037 0.95913 0.99949 1.21062 0.99537 0.93113 0.98315 0.93866 0.89654 0.93929 0.91112 0.91697 0.85196 0.86269 0.86118 0.85637 0.86684 0.86097 0.95345 0.95761 0.92544 0.86056 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.62 9.18 -35.23 -0.32 -4.95 16 3 C 0.10 1.23 4.91 36.01 0.18 1.41 16 4 C -0.08 -1.10 5.87 -104.29 -0.61 -1.71 16 5 C -0.10 -1.19 9.37 -39.63 -0.37 -1.57 16 6 C -0.13 -1.41 10.04 -39.52 -0.40 -1.81 16 7 C -0.12 -1.34 10.04 -39.63 -0.40 -1.73 16 8 C -0.11 -1.42 9.51 -39.25 -0.37 -1.79 16 9 C -0.02 -0.32 5.47 -104.90 -0.57 -0.90 16 10 C -0.09 -1.37 5.09 -104.90 -0.53 -1.90 16 11 C -0.11 -1.77 8.21 -39.25 -0.32 -2.10 16 12 C -0.12 -2.23 9.68 -39.63 -0.38 -2.61 16 13 C -0.02 -0.43 5.07 -104.56 -0.53 -0.96 16 14 C 0.01 0.28 4.17 -29.04 -0.12 0.16 16 15 C -0.51 -14.40 9.65 -34.44 -0.33 -14.73 16 16 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 19 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 C -0.12 -2.24 9.68 -39.63 -0.38 -2.62 16 24 C -0.10 -1.66 9.51 -39.25 -0.37 -2.03 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.86 5.53 -51.93 -0.29 0.57 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 1.48 7.00 -52.49 -0.37 1.11 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.53 8.04 -52.49 -0.42 1.10 16 34 H 0.12 1.62 6.24 -52.49 -0.33 1.29 16 35 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.03 0.66 7.14 -51.93 -0.37 0.28 16 37 H 0.02 0.55 7.51 -51.92 -0.39 0.16 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 40 H 0.12 1.61 8.04 -52.49 -0.42 1.18 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -30.83 334.73 -9.25 -40.07 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.56 Total: 1.57 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: -4.52 Total: -31.61 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.32 Total: -4.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.83 -9.25 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239952072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.442 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds