Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99749 * 2 1 4 4 C 1.50705 * 109.46964 * 180.02562 * 3 2 1 5 5 C 1.38037 * 120.06012 * 359.97438 * 4 3 2 6 6 C 1.38297 * 120.11920 * 180.02562 * 5 4 3 7 7 C 1.38343 * 120.24364 * 359.97438 * 6 5 4 8 8 C 1.37999 * 120.12369 * 359.97389 * 7 6 5 9 9 C 1.39321 * 120.06078 * 180.23881 * 4 3 2 10 10 C 1.48391 * 120.12187 * 0.02562 * 9 4 3 11 11 C 1.39356 * 120.12368 * 310.23919 * 10 9 4 12 12 C 1.37994 * 119.88062 * 180.02562 * 11 10 9 13 13 C 1.38342 * 120.11952 * 359.97438 * 12 11 10 14 14 C 1.38295 * 120.24542 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.93917 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47235 * 89.99944 * 15 14 13 17 17 H 1.07997 * 120.00007 * 359.97438 * 16 15 14 18 18 C 1.37867 * 119.99992 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00186 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46686 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47275 * 119.99992 * 20 18 16 23 23 H 1.48494 * 109.47451 * 240.00392 * 20 18 16 24 24 C 1.38045 * 120.11907 * 359.76007 * 14 13 12 25 25 H 1.09001 * 109.46601 * 60.00218 * 1 2 3 26 26 H 1.09002 * 109.46789 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46875 * 300.00020 * 1 2 3 28 28 H 1.08996 * 109.47396 * 59.99992 * 3 2 1 29 29 H 1.08998 * 109.47399 * 299.99717 * 3 2 1 30 30 H 1.07995 * 119.93983 * 0.02562 * 5 4 3 31 31 H 1.07998 * 119.87860 * 180.02562 * 6 5 4 32 32 H 1.08008 * 119.93668 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.06049 * 180.02562 * 8 7 6 34 34 H 1.08009 * 120.05964 * 359.97158 * 11 10 9 35 35 H 1.07997 * 119.94103 * 180.02562 * 12 11 10 36 36 H 1.08002 * 119.88026 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.47084 * 209.99501 * 15 14 13 38 38 H 1.08996 * 109.47325 * 329.99395 * 15 14 13 39 39 H 0.97003 * 119.99422 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.06072 * 180.27866 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1075 -0.0590 -0.0006 6 6 5.4861 -0.1696 -0.0006 7 6 6.2762 0.9660 -0.0013 8 6 5.6920 2.2162 -0.0024 9 6 4.3035 2.3335 0.0043 10 6 3.6696 3.6752 0.0107 11 6 2.6664 3.9791 -0.9076 12 6 2.0807 5.2285 -0.8974 13 6 2.4873 6.1784 0.0224 14 6 3.4817 5.8819 0.9367 15 6 3.9197 6.9221 1.9353 16 6 3.0846 6.8027 3.1841 17 1 2.3135 6.0493 3.2481 18 6 3.3050 7.6553 4.2449 19 7 4.2438 8.5731 4.1669 20 14 2.2694 7.5078 5.7926 21 1 1.2888 6.4047 5.6287 22 1 3.1507 7.2178 6.9521 23 1 1.5458 8.7831 6.0275 24 6 4.0706 4.6334 0.9391 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.4954 -0.9487 -0.0005 31 1 5.9475 -1.1461 -0.0010 32 1 7.3524 0.8738 -0.0017 33 1 6.3099 3.1020 -0.0033 34 1 2.3485 3.2384 -1.6265 35 1 1.3029 5.4650 -1.6084 36 1 2.0266 7.1552 0.0267 37 1 4.9696 6.7673 2.1843 38 1 3.7908 7.9154 1.5056 39 1 4.3985 9.1732 4.9132 40 1 4.8439 4.4013 1.6564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239952183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -9.453646 kcal Electronic energy + Delta-G solvation = -20981.771360 eV Core-core repulsion = 17918.710378 eV Total energy + Delta-G solvation = -3063.060982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89768 -38.20882 -37.50039 -33.72514 -32.50934 -31.69629 -31.06930 -28.85379 -27.25783 -27.06897 -25.46219 -23.28623 -23.15168 -21.33983 -21.03361 -19.77149 -16.89765 -16.48953 -16.33049 -16.12741 -15.71289 -15.25535 -14.75996 -14.59452 -14.42237 -14.18411 -13.77372 -13.19082 -13.00402 -12.64403 -12.60657 -12.37251 -12.19022 -11.74299 -11.58926 -11.35843 -11.23453 -11.05190 -10.87397 -10.74007 -10.49673 -10.27103 -9.89981 -9.63508 -9.46574 -8.93889 -8.61968 -8.45808 -8.05376 -7.74981 -6.07559 -4.11425 1.16674 1.48690 2.02920 2.11905 3.27278 3.35082 3.39908 3.62910 3.84054 4.33132 4.49772 4.83445 4.87246 5.08659 5.13559 5.16075 5.22359 5.26875 5.28198 5.46237 5.49930 5.51430 5.55903 5.62147 5.73970 5.85289 5.97183 6.09558 6.15136 6.22756 6.37951 6.54360 6.60608 6.66008 6.70337 6.97628 7.06179 7.09037 7.12919 7.16734 7.46033 7.64865 7.79435 7.88378 8.27888 8.93909 9.52773 11.02411 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.004357 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.882244 B = 6425.558240 C = 6755.239774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.099 3.901 4 C -0.080 4.080 5 C -0.099 4.099 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.107 4.107 9 C -0.026 4.026 10 C -0.062 4.062 11 C -0.140 4.140 12 C -0.122 4.122 13 C -0.119 4.119 14 C -0.032 4.032 15 C 0.047 3.953 16 C -0.511 4.511 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.104 4.104 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -15.225 -10.705 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.023 3.977 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.147 4.147 7 C -0.138 4.138 8 C -0.125 4.125 9 C -0.026 4.026 10 C -0.062 4.062 11 C -0.158 4.158 12 C -0.140 4.140 13 C -0.137 4.137 14 C -0.032 4.032 15 C 0.010 3.990 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.122 4.122 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.132 -15.246 -10.601 18.692 hybrid contribution -0.734 0.272 0.972 1.248 sum -2.866 -14.974 -9.629 18.032 Atomic orbital electron populations 1.22729 0.80864 1.02576 1.00277 1.87792 1.19725 1.28000 1.95563 1.21487 0.90243 0.84338 1.01615 1.19645 0.93793 0.93025 1.01593 1.20880 0.94449 0.97227 0.99152 1.21149 0.93771 0.98392 1.01360 1.21084 0.99737 0.92448 1.00528 1.21212 0.93554 0.97810 0.99922 1.18622 0.92914 0.91583 0.99465 1.18683 0.97553 0.92333 0.97631 1.20938 0.98019 0.97037 0.99829 1.20954 1.00091 0.93674 0.99311 1.21176 0.97616 0.99465 0.95447 1.20654 0.92927 0.95464 0.94136 1.18380 0.97153 0.91849 0.91632 1.21080 1.18204 1.16975 0.98701 0.92452 1.25002 0.95389 0.95187 0.98685 1.69969 1.31837 1.19561 1.31876 0.86494 0.80300 0.78008 0.83024 1.19686 1.20889 1.20898 1.21132 1.00634 0.92622 0.97807 0.94031 0.89687 0.93837 0.91497 0.91232 0.85219 0.86282 0.86090 0.85551 0.86945 0.86854 0.86325 0.95261 0.95204 0.92865 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.99 9.19 -35.23 -0.32 -5.32 16 3 C 0.10 1.34 4.89 36.01 0.18 1.51 16 4 C -0.08 -1.17 5.87 -104.29 -0.61 -1.78 16 5 C -0.10 -1.31 9.37 -39.63 -0.37 -1.68 16 6 C -0.13 -1.54 10.04 -39.52 -0.40 -1.93 16 7 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 8 C -0.11 -1.52 9.52 -39.26 -0.37 -1.89 16 9 C -0.03 -0.40 5.47 -104.90 -0.57 -0.97 16 10 C -0.06 -1.05 5.10 -104.90 -0.53 -1.59 16 11 C -0.14 -2.19 8.21 -39.25 -0.32 -2.51 16 12 C -0.12 -1.96 10.03 -39.63 -0.40 -2.35 16 13 C -0.12 -2.26 9.69 -39.52 -0.38 -2.64 16 14 C -0.03 -0.68 5.06 -104.67 -0.53 -1.21 16 15 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 16 C -0.51 -14.22 9.09 -34.44 -0.31 -14.53 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.10 -2.03 9.17 -39.25 -0.36 -2.39 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.88 5.51 -51.93 -0.29 0.59 16 30 H 0.13 1.60 7.00 -52.49 -0.37 1.23 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.70 8.05 -52.49 -0.42 1.28 16 34 H 0.11 1.51 6.19 -52.48 -0.32 1.18 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.35 8.05 -52.48 -0.42 1.93 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -30.18 338.28 -9.62 -39.81 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.59 Total: 1.28 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -4.52 Total: -31.84 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.74 Total: -25.48 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.32 Total: -5.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.18 -9.62 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239952183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.352 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds