Wall clock time and date at job start Tue Mar 31 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 O 1.42897 * 109.46821 * 119.99496 * 2 1 3 5 5 C 1.35869 * 116.99773 * 82.87644 * 4 2 1 6 6 C 1.38826 * 119.93774 * 354.83061 * 5 4 2 7 7 C 1.37910 * 120.06846 * 180.02562 * 6 5 4 8 8 C 1.39373 * 119.93398 * 0.02562 * 7 6 5 9 9 C 1.48377 * 120.06576 * 180.02562 * 8 7 6 10 10 C 1.39751 * 120.00011 * 359.97438 * 9 8 7 11 11 C 1.38381 * 120.37652 * 179.72441 * 10 9 8 12 12 C 1.37727 * 120.38351 * 0.23259 * 11 10 9 13 13 C 1.40764 * 119.98853 * 0.02562 * 12 11 10 14 14 C 1.41420 * 120.18291 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99732 * 212.56601 * 14 13 12 16 16 C 1.39931 * 120.00126 * 32.57380 * 14 13 12 17 17 N 1.30834 * 119.99790 * 9.84286 * 16 14 13 18 18 Si 1.86795 * 119.99789 * 189.84178 * 16 14 13 19 19 H 1.48500 * 109.46925 * 94.98526 * 18 16 14 20 20 H 1.48500 * 109.47137 * 214.98185 * 18 16 14 21 21 H 1.48498 * 109.47497 * 334.98528 * 18 16 14 22 22 C 1.38747 * 120.00429 * 180.23588 * 9 8 7 23 23 C 1.39373 * 119.86766 * 0.27520 * 8 7 6 24 24 C 1.37908 * 119.93763 * 359.46609 * 23 8 7 25 25 H 1.09004 * 109.46738 * 60.00240 * 1 2 3 26 26 H 1.08997 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47621 * 300.00583 * 1 2 3 28 28 H 1.09001 * 109.47595 * 239.99930 * 2 1 3 29 29 H 1.08994 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.09009 * 109.46769 * 299.99883 * 3 2 1 31 31 H 1.08997 * 109.47341 * 59.99245 * 3 2 1 32 32 H 1.08005 * 119.96918 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.03521 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.80920 * 359.97438 * 10 9 8 35 35 H 1.08006 * 119.80952 * 180.26018 * 11 10 9 36 36 H 1.07996 * 120.00610 * 180.02562 * 12 11 10 37 37 H 0.97001 * 119.99638 * 180.02562 * 17 16 14 38 38 H 1.08005 * 120.18211 * 359.97438 * 22 9 8 39 39 H 1.08005 * 120.02672 * 179.70428 * 23 8 7 40 40 H 1.08003 * 119.96802 * 180.25439 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0703 -2.0297 1.1133 6 6 1.5821 -2.7029 0.0016 7 6 1.6453 -4.0794 -0.0554 8 6 2.1994 -4.7947 1.0048 9 6 2.2693 -6.2756 0.9463 10 6 1.7788 -6.9547 -0.1723 11 6 1.8452 -8.3354 -0.2376 12 6 2.3911 -9.0563 0.8012 13 6 2.8850 -8.3888 1.9378 14 6 3.4459 -9.1251 3.0070 15 1 3.3445 -8.7671 4.0209 16 6 4.1325 -10.3173 2.7514 17 7 4.4237 -10.6535 1.5209 18 14 4.6331 -11.4287 4.1668 19 1 3.6010 -12.4787 4.3606 20 1 5.9372 -12.0678 3.8569 21 1 4.7590 -10.6233 5.4080 22 6 2.8167 -6.9867 2.0045 23 6 2.6829 -4.1164 2.1222 24 6 2.6220 -2.7395 2.1712 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.1517 -2.1482 -0.8191 33 1 1.2657 -4.6026 -0.9205 34 1 1.3490 -6.3984 -0.9923 35 1 1.4672 -8.8506 -1.1083 36 1 2.4403 -10.1337 0.7437 37 1 4.8992 -11.4801 1.3437 38 1 3.1932 -6.4652 2.8721 39 1 3.1085 -4.6684 2.9472 40 1 3.0003 -2.2132 3.0351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239959949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:39 Heat of formation + Delta-G solvation = -9.103663 kcal Electronic energy + Delta-G solvation = -20596.449713 eV Core-core repulsion = 17533.403908 eV Total energy + Delta-G solvation = -3063.045805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12044 -38.22575 -36.73311 -33.78005 -33.18922 -30.99451 -30.77055 -29.73647 -27.69347 -27.12017 -25.32611 -23.27726 -22.53651 -21.26751 -20.16071 -19.81912 -18.24312 -17.25820 -15.83842 -15.53968 -15.45279 -15.05827 -14.79945 -14.08742 -14.00564 -13.36977 -13.28927 -13.20890 -12.90089 -12.76710 -12.52447 -12.33356 -12.27928 -12.07275 -11.62550 -11.36752 -11.25939 -11.21113 -11.01201 -10.82325 -10.66693 -10.37805 -10.26035 -9.69903 -9.36423 -9.21847 -8.69680 -8.33008 -7.44309 -6.83115 -6.67259 -4.38706 1.51123 1.68620 2.79819 3.03978 3.09696 3.13181 3.21009 3.25243 3.96865 4.22887 4.59054 4.70884 4.74404 4.87249 5.10748 5.12629 5.28907 5.37174 5.47125 5.49533 5.54362 5.67052 5.71856 5.73849 5.88671 5.95529 6.01099 6.17138 6.33966 6.41212 6.59834 6.65810 6.85350 6.87898 7.01018 7.12389 7.24396 7.35918 7.55049 7.65051 7.81654 8.00193 8.03643 8.25874 8.61176 8.89893 8.93438 10.27998 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035865 B = 0.003165 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.512381 B = 8845.525574 C = 9420.903240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.077 3.923 3 C -0.147 4.147 4 O -0.315 6.315 5 C 0.108 3.892 6 C -0.208 4.208 7 C -0.083 4.083 8 C -0.047 4.047 9 C -0.040 4.040 10 C -0.215 4.215 11 C -0.111 4.111 12 C -0.145 4.145 13 C 0.109 3.891 14 C -0.470 4.470 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.808 5.808 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.197 4.197 23 C -0.080 4.080 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.279 0.721 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 15.559 -3.155 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 C -0.204 4.204 4 O -0.230 6.230 5 C 0.064 3.936 6 C -0.227 4.227 7 C -0.101 4.101 8 C -0.047 4.047 9 C -0.040 4.040 10 C -0.234 4.234 11 C -0.130 4.130 12 C -0.164 4.164 13 C 0.106 3.894 14 C -0.501 4.501 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.435 5.435 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.216 4.216 23 C -0.098 4.098 24 C -0.168 4.168 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.374 15.512 -3.129 16.418 hybrid contribution 0.234 -0.666 0.251 0.749 sum -4.140 14.846 -2.878 15.679 Atomic orbital electron populations 1.22410 0.95361 1.03320 1.02815 1.22350 0.94189 0.93523 0.87869 1.21834 1.02091 0.93710 1.02793 1.86067 1.81444 1.16602 1.38869 1.18943 0.97585 0.81926 0.95145 1.21129 1.07316 0.95370 0.98844 1.21070 0.97941 0.92695 0.98428 1.19068 0.98232 0.93647 0.93731 1.18301 1.00779 0.89249 0.95710 1.20454 1.10461 0.94079 0.98453 1.20649 1.00678 0.93683 0.97959 1.21402 1.00326 0.99625 0.95082 1.17556 0.88495 0.90522 0.92782 1.19515 1.31054 1.04918 0.94583 0.90517 1.25839 0.94305 0.97519 0.96513 1.69786 1.31028 1.22296 1.20369 0.86268 0.78347 0.80147 0.81728 1.19515 1.20356 1.18678 1.21183 1.07933 0.94091 0.98431 1.21176 0.97905 0.92633 0.98115 1.20314 1.04503 0.93575 0.98445 0.91291 0.91546 0.91563 0.91047 0.91699 0.90737 0.91596 0.85875 0.85661 0.89062 0.89129 0.86618 0.91067 0.88379 0.84879 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.12 37.16 0.34 -1.29 16 2 C 0.08 0.79 2.86 -26.73 -0.08 0.71 16 3 C -0.15 -1.16 9.56 37.16 0.36 -0.80 16 4 O -0.32 -4.32 9.81 -19.33 -0.19 -4.51 16 5 C 0.11 1.65 6.58 -39.14 -0.26 1.39 16 6 C -0.21 -3.07 8.14 -39.48 -0.32 -3.39 16 7 C -0.08 -1.40 9.42 -39.28 -0.37 -1.77 16 8 C -0.05 -0.90 5.88 -104.88 -0.62 -1.51 16 9 C -0.04 -0.90 5.87 -104.97 -0.62 -1.52 16 10 C -0.22 -4.74 9.44 -38.96 -0.37 -5.11 16 11 C -0.11 -2.58 10.01 -39.72 -0.40 -2.98 16 12 C -0.14 -3.74 8.63 -38.81 -0.33 -4.07 16 13 C 0.11 2.87 5.50 -106.87 -0.59 2.29 16 14 C -0.47 -12.44 9.04 -37.74 -0.34 -12.78 16 15 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 16 C 0.07 1.87 5.24 -17.34 -0.09 1.78 16 17 N -0.81 -21.11 11.06 55.55 0.61 -20.50 16 18 Si 0.91 18.88 29.57 -169.99 -5.03 13.86 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 22 C -0.20 -4.78 9.17 -38.53 -0.35 -5.13 16 23 C -0.08 -1.42 9.42 -39.28 -0.37 -1.79 16 24 C -0.15 -2.37 9.97 -39.48 -0.39 -2.76 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 1.49 5.33 -52.48 -0.28 1.21 16 33 H 0.13 1.96 6.18 -52.49 -0.32 1.63 16 34 H 0.09 1.76 6.18 -52.48 -0.32 1.43 16 35 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 36 H 0.12 3.08 6.48 -52.49 -0.34 2.74 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.10 2.22 6.19 -52.48 -0.32 1.90 16 39 H 0.13 2.27 6.19 -52.48 -0.32 1.95 16 40 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -28.19 328.23 -9.56 -37.75 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.11 Total: 7.20 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -4.80 Total: -38.75 kcal Atomic # 7 Polarization: -21.11 SS G_CDS: 0.61 Total: -20.50 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.19 Total: -4.51 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.19 -9.56 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239959949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.644 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds