Wall clock time and date at job start Tue Mar 31 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47438 * 2 1 4 4 O 1.42904 * 109.47143 * 120.00154 * 2 1 3 5 5 C 1.35806 * 117.00130 * 156.04124 * 4 2 1 6 6 C 1.38972 * 119.90672 * 357.19642 * 5 4 2 7 7 C 1.37762 * 120.09088 * 179.76347 * 6 5 4 8 8 C 1.39740 * 119.90626 * 0.53078 * 7 6 5 9 9 C 1.47768 * 120.09149 * 179.74316 * 8 7 6 10 10 C 1.39240 * 120.34195 * 129.69367 * 9 8 7 11 11 C 1.38029 * 119.97524 * 179.76712 * 10 9 8 12 12 C 1.38958 * 120.68912 * 0.52009 * 11 10 9 13 13 C 1.36409 * 120.69707 * 359.74170 * 12 11 10 14 14 C 1.40766 * 119.98700 * 359.97438 * 13 12 11 15 15 C 1.40848 * 120.32875 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99677 * 149.92173 * 15 14 13 17 17 C 1.40036 * 120.00611 * 329.92029 * 15 14 13 18 18 N 1.30799 * 119.99566 * 349.66911 * 17 15 14 19 19 Si 1.86801 * 120.00315 * 169.66710 * 17 15 14 20 20 H 1.48500 * 109.47098 * 90.00324 * 19 17 15 21 21 H 1.48504 * 109.46923 * 210.00191 * 19 17 15 22 22 H 1.48491 * 109.47049 * 329.99895 * 19 17 15 23 23 C 1.39741 * 119.81659 * 359.71746 * 8 7 6 24 24 C 1.37760 * 119.90598 * 0.02562 * 23 8 7 25 25 H 1.09006 * 109.46621 * 299.99904 * 1 2 3 26 26 H 1.08991 * 109.47082 * 59.99676 * 1 2 3 27 27 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47162 * 239.99599 * 2 1 3 29 29 H 1.08996 * 109.46859 * 59.99681 * 3 2 1 30 30 H 1.08997 * 109.47219 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46571 * 300.00215 * 3 2 1 32 32 H 1.07999 * 119.95466 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.04477 * 180.25068 * 7 6 5 34 34 H 1.08006 * 120.00634 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.65296 * 180.25718 * 11 10 9 36 36 H 1.07999 * 119.65217 * 179.75734 * 12 11 10 37 37 H 1.07996 * 120.00657 * 179.97438 * 13 12 11 38 38 H 0.97005 * 119.99800 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.04464 * 180.02562 * 23 8 7 40 40 H 1.08000 * 119.94974 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2544 -1.2056 1.1053 6 6 3.9819 -1.1311 -0.0764 7 6 5.2501 -1.6651 -0.1416 8 6 5.8006 -2.2920 0.9794 9 6 7.1584 -2.8712 0.9124 10 6 8.1032 -2.5637 1.8879 11 6 9.3678 -3.1128 1.8205 12 6 9.7163 -3.9652 0.7799 13 6 8.8143 -4.2810 -0.1934 14 6 7.5146 -3.7421 -0.1499 15 6 6.5777 -4.0629 -1.1514 16 1 5.5236 -4.0868 -0.9170 17 6 7.0127 -4.3509 -2.4509 18 7 8.2565 -4.1280 -2.7886 19 14 5.8167 -5.0535 -3.7021 20 1 5.1582 -3.9427 -4.4355 21 1 6.5537 -5.9128 -4.6632 22 1 4.7874 -5.8635 -3.0024 23 6 5.0636 -2.3693 2.1642 24 6 3.7981 -1.8281 2.2224 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.5538 -0.6509 -0.9439 33 1 5.8165 -1.6032 -1.0592 34 1 7.8452 -1.8991 2.6992 35 1 10.0953 -2.8740 2.5822 36 1 10.7118 -4.3823 0.7415 37 1 9.0972 -4.9444 -0.9973 38 1 8.5578 -4.3271 -3.6890 39 1 5.4856 -2.8527 3.0330 40 1 3.2277 -1.8878 3.1376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239960749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:43 Heat of formation + Delta-G solvation = -8.828275 kcal Electronic energy + Delta-G solvation = -21337.077070 eV Core-core repulsion = 18274.043206 eV Total energy + Delta-G solvation = -3063.033864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82111 -38.07986 -36.52357 -33.70159 -33.14209 -30.93817 -30.43595 -29.46707 -27.60336 -27.16690 -25.25140 -23.09429 -22.04427 -21.09074 -20.39703 -19.51105 -17.94402 -17.25738 -15.77063 -15.48341 -15.25749 -15.01037 -14.34282 -14.07463 -13.77454 -13.31995 -13.31185 -12.83826 -12.77827 -12.60312 -12.51550 -12.34837 -12.05712 -11.67875 -11.55854 -11.34286 -11.18559 -11.09703 -10.95064 -10.65886 -10.47144 -10.45290 -10.08682 -9.60625 -9.43027 -9.26611 -8.35907 -7.86968 -7.38466 -7.01167 -6.72764 -4.39418 1.93291 2.05720 2.76842 3.03322 3.04519 3.09381 3.19439 3.48631 3.90093 4.47603 4.62894 4.77126 4.91169 5.05571 5.39564 5.44240 5.48794 5.57881 5.65050 5.65424 5.72612 5.84236 5.95691 6.09961 6.12015 6.14898 6.21485 6.33443 6.43706 6.58500 6.71349 6.95833 7.01112 7.06897 7.18509 7.28269 7.39118 7.49731 7.56970 7.85046 7.94047 8.04712 8.07061 8.24393 8.58470 8.83424 8.91917 10.15900 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.005663 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.905300 B = 4943.586545 C = 6413.694581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.178 4.178 4 O -0.317 6.317 5 C 0.101 3.899 6 C -0.213 4.213 7 C -0.057 4.057 8 C -0.016 4.016 9 C -0.177 4.177 10 C -0.077 4.077 11 C -0.238 4.238 12 C -0.105 4.105 13 C -0.153 4.153 14 C 0.129 3.871 15 C -0.452 4.452 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.905 3.095 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.093 4.093 24 C -0.157 4.157 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.121 0.879 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 5.899 2.103 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.235 4.235 4 O -0.232 6.232 5 C 0.057 3.943 6 C -0.232 4.232 7 C -0.075 4.075 8 C -0.016 4.016 9 C -0.179 4.179 10 C -0.095 4.095 11 C -0.258 4.258 12 C -0.124 4.124 13 C -0.172 4.172 14 C 0.126 3.874 15 C -0.482 4.482 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.423 5.423 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.111 4.111 24 C -0.175 4.175 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.465 5.883 2.038 11.329 hybrid contribution -0.283 -0.230 -0.933 1.001 sum -9.748 5.652 1.105 11.322 Atomic orbital electron populations 1.21827 0.93024 1.02930 1.02587 1.22337 0.94872 0.92551 0.88403 1.22342 1.02517 0.96157 1.02499 1.86022 1.29399 1.69171 1.38649 1.18938 0.84389 0.96466 0.94539 1.21123 0.97119 1.07948 0.96983 1.21247 0.93556 0.93871 0.98826 1.18752 0.94159 0.96320 0.92361 1.18639 0.92620 1.05113 1.01481 1.20587 0.93514 0.98602 0.96791 1.20301 0.96789 1.07153 1.01524 1.20496 0.97821 0.98658 0.95404 1.21085 0.94624 1.02650 0.98869 1.17561 0.92303 0.87646 0.89850 1.19516 0.95084 1.40470 0.93117 0.90109 1.25900 0.95570 0.93113 0.99673 1.69782 1.16424 1.35713 1.20431 0.86352 0.81013 0.79785 0.79937 1.19439 1.20108 1.18435 1.21096 0.92969 0.99054 0.98026 1.20151 0.96505 1.03944 0.96934 0.91752 0.90885 0.91787 0.90834 0.91788 0.91641 0.91451 0.86294 0.85107 0.89193 0.89446 0.89503 0.86312 0.90874 0.86118 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.56 37.16 0.36 -1.07 16 2 C 0.07 0.93 2.86 -26.73 -0.08 0.85 16 3 C -0.18 -1.96 9.27 37.16 0.34 -1.61 16 4 O -0.32 -5.00 9.80 -19.13 -0.19 -5.19 16 5 C 0.10 1.77 6.57 -39.04 -0.26 1.51 16 6 C -0.21 -3.83 8.35 -39.48 -0.33 -4.16 16 7 C -0.06 -1.18 8.07 -39.19 -0.32 -1.49 16 8 C -0.02 -0.34 4.94 -104.88 -0.52 -0.86 16 9 C -0.18 -4.21 5.52 -104.23 -0.58 -4.79 16 10 C -0.08 -1.71 9.51 -39.29 -0.37 -2.09 16 11 C -0.24 -5.28 10.03 -39.39 -0.40 -5.68 16 12 C -0.11 -2.44 9.96 -39.97 -0.40 -2.84 16 13 C -0.15 -3.89 8.59 -39.29 -0.34 -4.23 16 14 C 0.13 3.32 5.54 -106.55 -0.59 2.73 16 15 C -0.45 -11.50 7.00 -37.92 -0.27 -11.76 16 16 H 0.08 2.05 6.81 -52.48 -0.36 1.69 16 17 C 0.07 1.81 5.25 -17.32 -0.09 1.72 16 18 N -0.80 -19.99 10.91 55.55 0.61 -19.39 16 19 Si 0.90 18.46 29.57 -169.99 -5.03 13.43 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.09 -1.78 9.52 -39.19 -0.37 -2.15 16 24 C -0.16 -2.76 9.97 -39.49 -0.39 -3.15 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.12 1.87 5.67 -52.49 -0.30 1.57 16 33 H 0.13 2.86 7.31 -52.48 -0.38 2.48 16 34 H 0.09 1.80 8.05 -52.48 -0.42 1.38 16 35 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.12 3.10 6.30 -52.49 -0.33 2.77 16 38 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 39 H 0.12 2.13 8.05 -52.48 -0.42 1.70 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -26.90 330.81 -9.64 -36.53 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.42 Total: 8.69 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: -4.59 Total: -39.06 kcal Atomic # 7 Polarization: -19.99 SS G_CDS: 0.61 Total: -19.39 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.19 Total: -5.19 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.90 -9.64 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239960749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.705 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds