Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 O 1.42898 * 109.47393 * 119.99965 * 2 1 3 5 5 C 1.35902 * 116.99843 * 156.64458 * 4 2 1 6 6 C 1.38829 * 119.99869 * 5.11956 * 5 4 2 7 7 C 1.38207 * 120.18545 * 179.97438 * 6 5 4 8 8 C 1.38068 * 120.17869 * 359.72494 * 7 6 5 9 9 C 1.39331 * 119.99042 * 0.54746 * 8 7 6 10 10 C 1.48421 * 120.09033 * 179.72234 * 9 8 7 11 11 C 1.39719 * 119.99447 * 179.75651 * 10 9 8 12 12 C 1.38395 * 120.37824 * 179.97438 * 11 10 9 13 13 C 1.37717 * 120.37674 * 359.97438 * 12 11 10 14 14 C 1.40753 * 119.99039 * 359.72518 * 13 12 11 15 15 C 1.41427 * 120.18691 * 180.29836 * 14 13 12 16 16 H 1.08004 * 119.99909 * 208.79359 * 15 14 13 17 17 C 1.39927 * 120.00032 * 28.79846 * 15 14 13 18 18 N 1.30830 * 119.99883 * 10.53327 * 17 15 14 19 19 Si 1.86803 * 119.99782 * 190.53051 * 17 15 14 20 20 H 1.48504 * 109.46938 * 90.00404 * 19 17 15 21 21 H 1.48508 * 109.46981 * 209.99981 * 19 17 15 22 22 H 1.48495 * 109.47311 * 330.00016 * 19 17 15 23 23 C 1.38727 * 120.00322 * 359.72934 * 10 9 8 24 24 C 1.38506 * 119.99336 * 185.09667 * 5 4 2 25 25 H 1.09003 * 109.47181 * 299.99488 * 1 2 3 26 26 H 1.09003 * 109.47466 * 59.99839 * 1 2 3 27 27 H 1.08999 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47181 * 240.00511 * 2 1 3 29 29 H 1.08994 * 109.47280 * 300.00145 * 3 2 1 30 30 H 1.09003 * 109.46792 * 60.00274 * 3 2 1 31 31 H 1.08994 * 109.47232 * 179.97438 * 3 2 1 32 32 H 1.07996 * 119.90849 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.90558 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.00639 * 180.28029 * 8 7 6 35 35 H 1.08003 * 119.81720 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.81089 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.00245 * 180.02562 * 13 12 11 38 38 H 0.97000 * 119.99608 * 179.97438 * 18 17 15 39 39 H 1.08007 * 120.18222 * 0.02562 * 23 10 9 40 40 H 1.07999 * 120.09345 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2601 -1.1949 1.1095 6 6 4.0554 -0.9692 -0.0058 7 6 5.3312 -1.4970 -0.0679 8 6 5.8239 -2.2469 0.9815 9 6 5.0301 -2.4828 2.1020 10 6 5.5552 -3.2938 3.2286 11 6 4.7593 -3.5248 4.3534 12 6 5.2408 -4.2803 5.4083 13 6 6.5097 -4.8134 5.3610 14 6 7.3227 -4.5957 4.2327 15 6 8.6241 -5.1465 4.1771 16 1 9.3958 -4.6519 3.6058 17 6 8.9119 -6.3322 4.8620 18 7 7.9415 -7.0403 5.3803 19 14 10.6817 -6.9042 5.0362 20 1 11.2651 -6.3371 6.2785 21 1 10.7182 -8.3872 5.1044 22 1 11.4686 -6.4430 3.8644 23 6 6.8361 -3.8228 3.1646 24 6 3.7445 -1.9508 2.1641 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 3.1299 1.4426 0.0005 32 1 3.6764 -0.3788 -0.8269 33 1 5.9462 -1.3182 -0.9375 34 1 6.8230 -2.6542 0.9320 35 1 3.7626 -3.1115 4.4001 36 1 4.6176 -4.4535 6.2732 37 1 6.8792 -5.4024 6.1874 38 1 8.1411 -7.8625 5.8547 39 1 7.4538 -3.6461 2.2965 40 1 3.1270 -2.1273 3.0324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239968194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = -20.881756 kcal Electronic energy + Delta-G solvation = -20677.621943 eV Core-core repulsion = 17614.065401 eV Total energy + Delta-G solvation = -3063.556542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27449 -39.72927 -38.23152 -35.58185 -34.16574 -33.03175 -31.93975 -30.76582 -29.41110 -28.07148 -27.21042 -24.60639 -23.83943 -22.70754 -21.93891 -21.10695 -19.50620 -18.41428 -17.58945 -17.10109 -16.71368 -16.35817 -16.22038 -15.70024 -15.24828 -14.87572 -14.64303 -14.44077 -14.35756 -13.94244 -13.81893 -13.53507 -13.23024 -13.15976 -12.94343 -12.88299 -12.81407 -12.59795 -12.30217 -12.16537 -12.06546 -11.71997 -11.57553 -11.48963 -11.17549 -11.09820 -10.29389 -9.40243 -9.24219 -8.69875 -8.56162 -6.38246 -0.01756 0.52425 0.96877 1.32811 1.39075 1.51944 1.55536 2.22022 2.25737 2.68690 3.00474 3.74943 3.83363 3.85981 3.93355 4.04647 4.11494 4.22119 4.34297 4.38388 4.51177 4.60371 4.63699 4.71932 4.83855 4.87644 4.91855 5.00105 5.05376 5.13881 5.20884 5.25796 5.28952 5.34433 5.37734 5.48957 5.63767 5.69069 5.86679 5.98957 6.07420 6.16924 6.35857 6.55008 6.66853 6.93835 6.99330 8.38506 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.003256 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.416164 B = 8598.466674 C = 9168.261117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 C -0.178 4.178 4 O -0.329 6.329 5 C 0.128 3.872 6 C -0.214 4.214 7 C -0.073 4.073 8 C -0.168 4.168 9 C -0.003 4.003 10 C -0.046 4.046 11 C -0.217 4.217 12 C -0.113 4.113 13 C -0.175 4.175 14 C 0.076 3.924 15 C -0.500 4.500 16 H 0.076 0.924 17 C 0.031 3.969 18 N -0.837 5.837 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.212 4.212 24 C -0.169 4.169 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.286 0.714 39 H 0.106 0.894 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 12.043 -11.338 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 C -0.235 4.235 4 O -0.244 6.244 5 C 0.083 3.917 6 C -0.232 4.232 7 C -0.091 4.091 8 C -0.186 4.186 9 C -0.003 4.003 10 C -0.046 4.046 11 C -0.236 4.236 12 C -0.131 4.131 13 C -0.195 4.195 14 C 0.074 3.926 15 C -0.530 4.530 16 H 0.094 0.906 17 C -0.182 4.182 18 N -0.464 5.464 19 Si 0.807 3.193 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.231 4.231 24 C -0.187 4.187 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.578 11.830 -11.066 18.819 hybrid contribution 0.817 -0.651 0.435 1.131 sum -8.761 11.179 -10.631 17.741 Atomic orbital electron populations 1.21881 0.91158 1.03159 1.04062 1.22773 0.96467 0.93082 0.86745 1.22395 1.01843 0.95302 1.03990 1.86107 1.27777 1.69434 1.41062 1.18872 0.84944 0.93474 0.94447 1.21520 0.95864 1.06722 0.99078 1.21171 0.95170 0.94659 0.98086 1.21359 1.00654 1.02344 0.94262 1.18822 0.93000 0.94841 0.93644 1.18645 0.94206 0.97958 0.93785 1.20835 1.00187 1.06913 0.95701 1.20946 0.95826 0.98020 0.98339 1.21469 0.95428 1.03729 0.98859 1.17932 0.93859 0.90319 0.90526 1.19801 0.96463 1.07746 1.29018 0.90583 1.26754 1.03526 0.95625 0.92321 1.69858 1.35336 1.13052 1.28107 0.85144 0.76612 0.77755 0.79806 1.18700 1.19358 1.18199 1.21314 0.95819 1.07021 0.98942 1.20498 0.96202 1.02330 0.99683 0.91865 0.87905 0.92263 0.90017 0.88486 0.92109 0.92471 0.82594 0.82627 0.85889 0.86522 0.86710 0.87635 0.90323 0.87599 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.56 71.98 0.69 -1.31 16 2 C 0.06 1.15 2.85 30.60 0.09 1.24 16 3 C -0.18 -2.62 9.13 71.98 0.66 -1.96 16 4 O -0.33 -8.94 9.80 -92.44 -0.91 -9.85 16 5 C 0.13 3.87 6.58 22.48 0.15 4.02 16 6 C -0.21 -5.40 8.17 22.40 0.18 -5.22 16 7 C -0.07 -1.95 10.03 22.22 0.22 -1.73 16 8 C -0.17 -5.81 9.42 22.49 0.21 -5.60 16 9 C 0.00 -0.12 5.87 -20.05 -0.12 -0.23 16 10 C -0.05 -2.14 5.87 -20.09 -0.12 -2.26 16 11 C -0.22 -10.00 9.43 22.67 0.21 -9.78 16 12 C -0.11 -5.46 10.01 22.18 0.22 -5.24 16 13 C -0.18 -9.54 8.65 22.76 0.20 -9.35 16 14 C 0.08 4.22 5.55 -21.32 -0.12 4.10 16 15 C -0.50 -27.55 9.06 23.46 0.21 -27.34 16 16 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 17 C 0.03 1.59 5.26 85.25 0.45 2.04 16 18 N -0.84 -44.89 10.83 21.82 0.24 -44.66 16 19 Si 0.99 39.04 29.57 68.60 2.03 41.07 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 C -0.21 -10.77 9.17 22.95 0.21 -10.56 16 24 C -0.17 -6.08 9.36 22.58 0.21 -5.87 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.29 6.40 -2.39 -0.02 1.27 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.94 6.75 -2.39 -0.02 0.93 16 32 H 0.16 2.84 5.36 -2.91 -0.02 2.83 16 33 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.12 4.27 6.19 -2.91 -0.02 4.25 16 35 H 0.12 4.72 6.18 -2.91 -0.02 4.70 16 36 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.11 5.97 6.20 -2.91 -0.02 5.95 16 38 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 39 H 0.11 5.04 6.19 -2.91 -0.02 5.03 16 40 H 0.12 4.48 6.19 -2.91 -0.02 4.46 16 Total: -1.00 -63.70 327.94 5.97 -57.74 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 1.05 Total: 30.76 kcal Atomic # 6 Polarization: -78.62 SS G_CDS: 3.56 Total: -75.06 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.24 Total: -44.66 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.91 Total: -9.85 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -63.70 5.97 -57.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239968194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.854 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds