Wall clock time and date at job start Tue Mar 31 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.36258 * 119.93823 * 2 1 4 4 C 1.40923 * 119.87655 * 180.02562 * 3 2 1 5 5 C 1.41027 * 120.11329 * 180.02562 * 4 3 2 6 6 H 1.08003 * 120.00006 * 334.41987 * 5 4 3 7 7 C 1.39934 * 119.99566 * 154.41720 * 5 4 3 8 8 N 1.30844 * 120.00542 * 343.14397 * 7 5 4 9 9 Si 1.86804 * 119.99677 * 163.14517 * 7 5 4 10 10 H 1.48496 * 109.47274 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47063 * 119.99989 * 9 7 5 12 12 H 1.48503 * 109.46967 * 239.99774 * 9 7 5 13 13 C 1.40953 * 119.77063 * 359.97438 * 4 3 2 14 14 C 1.36216 * 119.87610 * 0.25217 * 13 4 3 15 15 C 1.39934 * 119.94486 * 179.97438 * 2 1 3 16 16 C 1.47995 * 119.87701 * 0.02562 * 15 2 1 17 17 C 1.41093 * 126.37049 * 310.02521 * 16 15 2 18 18 N 1.30547 * 108.12083 * 180.02562 * 17 16 15 19 19 N 1.39955 * 108.85270 * 0.02562 * 18 17 16 20 20 C 1.46499 * 125.81557 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.46692 * 304.96709 * 20 19 18 22 22 C 1.52999 * 117.49926 * 243.62140 * 21 20 19 23 23 C 1.52996 * 60.00391 * 252.51298 * 22 21 20 24 24 C 1.34703 * 108.37144 * 359.72465 * 19 18 17 25 25 H 1.08999 * 109.47532 * 90.00786 * 1 2 3 26 26 H 1.09001 * 109.46900 * 210.00251 * 1 2 3 27 27 H 1.09006 * 109.47536 * 329.99907 * 1 2 3 28 28 H 1.07998 * 120.05817 * 359.97438 * 3 2 1 29 29 H 0.97002 * 120.00455 * 180.02562 * 8 7 5 30 30 H 1.07996 * 120.06185 * 179.97438 * 13 4 3 31 31 H 1.07993 * 119.94108 * 179.73078 * 14 13 4 32 32 H 1.07999 * 125.93474 * 0.02562 * 17 16 15 33 33 H 1.08997 * 109.47816 * 64.96735 * 20 19 18 34 34 H 1.08998 * 109.47160 * 184.97331 * 20 19 18 35 35 H 1.09001 * 115.55102 * 29.33125 * 21 20 19 36 36 H 1.09006 * 117.49889 * 0.02562 * 22 21 20 37 37 H 1.09004 * 117.50063 * 145.01923 * 22 21 20 38 38 H 1.08994 * 117.49963 * 252.51376 * 23 22 21 39 39 H 1.09003 * 117.51687 * 107.47602 * 23 22 21 40 40 H 1.07999 * 126.30697 * 180.30566 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1869 1.1808 0.0000 4 6 3.5961 1.1792 -0.0005 5 6 4.3050 2.3984 0.0000 6 1 3.8469 3.2896 -0.4031 7 6 5.6018 2.4534 0.5229 8 7 6.0364 1.4924 1.2972 9 14 6.7126 3.8990 0.1153 10 1 5.9896 4.8436 -0.7735 11 1 7.0989 4.5952 1.3688 12 1 7.9326 3.4069 -0.5738 13 6 4.2947 -0.0450 -0.0005 14 6 3.6051 -1.2197 -0.0052 15 6 2.2054 -1.2125 0.0005 16 6 1.4614 -2.4919 0.0005 17 6 0.4089 -2.8477 0.8702 18 7 0.0134 -4.0519 0.5576 19 7 0.7851 -4.5177 -0.5130 20 6 0.6535 -5.8258 -1.1595 21 6 0.7737 -6.9293 -0.1065 22 6 1.9577 -7.8912 -0.2231 23 6 0.5458 -8.3712 -0.5650 24 6 1.6650 -3.5559 -0.8522 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6469 2.1160 -0.0004 29 1 6.9353 1.5307 1.6599 30 1 5.3746 -0.0517 -0.0014 31 1 4.1392 -2.1583 -0.0096 32 1 0.0013 -2.2310 1.6575 33 1 -0.3186 -5.8938 -1.6477 34 1 1.4423 -5.9450 -1.9022 35 1 0.4395 -6.6612 0.8958 36 1 2.6515 -7.7376 -1.0498 37 1 2.4030 -8.2559 0.7026 38 1 0.0621 -9.0516 0.1357 39 1 0.3100 -8.5334 -1.6168 40 1 2.3965 -3.6091 -1.6450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240514049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:14 Heat of formation + Delta-G solvation = 111.228237 kcal Electronic energy + Delta-G solvation = -20721.073059 eV Core-core repulsion = 17695.537988 eV Total energy + Delta-G solvation = -3025.535072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64729 -37.87157 -37.41826 -34.08733 -32.54450 -31.17003 -30.74612 -28.70399 -26.90522 -25.75336 -24.58880 -22.65484 -21.62834 -21.30987 -20.21436 -19.81657 -19.24981 -17.05288 -16.78534 -15.62445 -15.23695 -14.98290 -14.65667 -14.02310 -13.70454 -13.65310 -13.56211 -12.79319 -12.60178 -12.47339 -12.32617 -11.84953 -11.83210 -11.79647 -11.55670 -11.38366 -11.08925 -10.80611 -10.69503 -10.66889 -10.41570 -10.27204 -10.18042 -9.53905 -9.37837 -9.08413 -8.95356 -8.09199 -7.35394 -6.90734 -6.73172 -4.30443 2.25140 2.68453 2.78357 3.05696 3.07422 3.13191 3.15057 3.54955 3.60553 3.93138 4.29482 4.60166 4.63563 4.69886 4.90790 5.15053 5.29941 5.35056 5.38804 5.49771 5.61313 5.68824 5.82497 5.95112 6.06009 6.11223 6.21189 6.30665 6.43529 6.46181 6.54881 6.68429 6.98691 7.08263 7.14662 7.33319 7.39767 7.46750 7.69209 7.99675 8.09797 8.14962 8.24943 8.32306 8.66347 8.90538 9.01577 10.18195 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.003391 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.213449 B = 8255.190902 C = 8963.849017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.044 4.044 3 C -0.224 4.224 4 C 0.115 3.885 5 C -0.458 4.458 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.790 5.790 9 Si 0.907 3.093 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.272 1.272 13 C -0.169 4.169 14 C -0.082 4.082 15 C -0.152 4.152 16 C -0.133 4.133 17 C 0.048 3.952 18 N -0.310 5.310 19 N -0.376 5.376 20 C 0.171 3.829 21 C -0.165 4.165 22 C -0.178 4.178 23 C -0.173 4.173 24 C 0.028 3.972 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.280 0.720 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 -12.758 -3.955 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.244 4.244 4 C 0.113 3.887 5 C -0.488 4.488 6 H 0.096 0.904 7 C -0.143 4.143 8 N -0.415 5.415 9 Si 0.731 3.269 10 H -0.184 1.184 11 H -0.200 1.200 12 H -0.197 1.197 13 C -0.189 4.189 14 C -0.101 4.101 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.138 4.138 18 N -0.131 5.131 19 N -0.159 5.159 20 C 0.050 3.950 21 C -0.184 4.184 22 C -0.215 4.215 23 C -0.211 4.211 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.196 0.804 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.606 -13.895 -3.614 15.804 hybrid contribution 1.298 1.276 -0.244 1.836 sum -5.308 -12.619 -3.859 14.224 Atomic orbital electron populations 1.20851 0.94034 1.01228 1.00692 1.19061 0.93467 0.92743 0.99176 1.20539 0.94212 0.95325 1.14289 1.17642 0.90855 0.93188 0.87045 1.19586 0.98092 0.96210 1.34893 0.90424 1.25925 0.98403 0.97255 0.92696 1.69851 1.17891 1.31823 1.21969 0.86289 0.79934 0.81422 0.79246 1.18399 1.20003 1.19735 1.20953 0.99621 0.91424 1.06858 1.20424 0.92600 0.96731 1.00369 1.17259 0.91698 0.88595 1.17884 1.19291 1.00767 0.95917 0.98446 1.23995 0.97042 0.92821 0.99905 1.76933 1.18448 1.13460 1.04293 1.48090 1.27864 1.12787 1.27152 1.21093 1.02934 0.78089 0.92928 1.22610 1.04048 0.90346 1.01418 1.23085 0.91276 1.03672 1.03506 1.22957 0.99631 0.96289 1.02225 1.22837 0.97084 0.89983 1.01689 0.93065 0.92022 0.93096 0.89053 0.90932 0.86639 0.89685 0.80386 0.89968 0.89023 0.86477 0.88585 0.88671 0.88521 0.88580 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.59 36.00 0.35 -1.69 16 2 C -0.04 -0.98 5.87 -104.71 -0.61 -1.60 16 3 C -0.22 -5.48 9.36 -39.28 -0.37 -5.85 16 4 C 0.12 3.05 5.57 -106.80 -0.59 2.45 16 5 C -0.46 -12.07 9.03 -37.89 -0.34 -12.41 16 6 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 7 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 8 N -0.79 -20.32 10.95 55.55 0.61 -19.71 16 9 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 10 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 11 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C -0.17 -4.36 8.62 -39.28 -0.34 -4.70 16 14 C -0.08 -1.93 9.64 -39.66 -0.38 -2.31 16 15 C -0.15 -3.36 5.78 -104.61 -0.61 -3.96 16 16 C -0.13 -2.55 5.14 -104.95 -0.54 -3.09 16 17 C 0.05 0.85 9.99 -17.02 -0.17 0.68 16 18 N -0.31 -5.32 12.15 30.84 0.37 -4.95 16 19 N -0.38 -5.72 3.66 -60.75 -0.22 -5.94 16 20 C 0.17 1.87 6.78 -4.04 -0.03 1.85 16 21 C -0.17 -1.72 5.92 -90.62 -0.54 -2.26 16 22 C -0.18 -1.57 10.18 -26.73 -0.27 -1.85 16 23 C -0.17 -1.36 10.25 -26.73 -0.27 -1.64 16 24 C 0.03 0.47 11.38 -16.43 -0.19 0.28 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.05 4.37 -51.93 -0.23 0.82 16 27 H 0.05 0.86 8.08 -51.93 -0.42 0.45 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.12 3.07 6.19 -52.49 -0.32 2.75 16 31 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.18 2.89 7.08 -52.49 -0.37 2.52 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.80 7.80 -51.93 -0.40 0.40 16 35 H 0.12 1.48 7.90 -51.93 -0.41 1.07 16 36 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -28.80 336.46 -9.70 -38.50 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.51 Total: 7.86 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -5.00 Total: -34.31 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.76 Total: -30.60 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.80 -9.70 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240514049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.730 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds