Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31254 * 119.79953 * 2 1 4 4 C 1.33077 * 121.71380 * 180.29123 * 3 2 1 5 5 C 1.47788 * 119.45865 * 179.70795 * 4 3 2 6 6 C 1.39764 * 120.06847 * 179.97438 * 5 4 3 7 7 C 1.37675 * 119.92898 * 180.23319 * 6 5 4 8 8 C 1.39198 * 120.06683 * 359.49258 * 7 6 5 9 9 N 1.39264 * 119.92872 * 180.23276 * 8 7 6 10 10 C 1.46497 * 120.00200 * 354.13924 * 9 8 7 11 11 C 1.46498 * 119.99805 * 174.13605 * 9 8 7 12 12 C 1.39187 * 120.13888 * 0.25605 * 8 7 6 13 13 C 1.37681 * 120.06849 * 0.02562 * 12 8 7 14 14 C 1.40002 * 121.08590 * 359.42864 * 4 3 2 15 15 C 1.36532 * 119.46126 * 0.27907 * 14 4 3 16 16 C 1.40960 * 119.79409 * 179.72961 * 2 1 3 17 17 C 1.41006 * 120.54551 * 0.02562 * 16 2 1 18 18 H 1.08000 * 120.00780 * 331.12270 * 17 16 2 19 19 C 1.39988 * 119.99794 * 151.12030 * 17 16 2 20 20 N 1.30818 * 119.99664 * 347.94736 * 19 17 16 21 21 Si 1.86797 * 119.99773 * 167.94534 * 19 17 16 22 22 H 1.48498 * 109.47417 * 90.00319 * 21 19 17 23 23 H 1.48507 * 109.47091 * 209.99994 * 21 19 17 24 24 H 1.48500 * 109.47534 * 330.00129 * 21 19 17 25 25 H 1.08997 * 109.47155 * 270.27748 * 1 2 3 26 26 H 1.09010 * 109.46784 * 30.27342 * 1 2 3 27 27 H 1.08995 * 109.47508 * 150.27530 * 1 2 3 28 28 H 1.07997 * 120.03988 * 359.97438 * 6 5 4 29 29 H 1.07998 * 119.96245 * 179.77339 * 7 6 5 30 30 H 1.08996 * 109.47705 * 89.99501 * 10 9 8 31 31 H 1.08999 * 109.47071 * 210.00093 * 10 9 8 32 32 H 1.09004 * 109.47234 * 329.99838 * 10 9 8 33 33 H 1.09000 * 109.47171 * 355.40908 * 11 9 8 34 34 H 1.09002 * 109.46826 * 115.40260 * 11 9 8 35 35 H 1.08998 * 109.47387 * 235.40222 * 11 9 8 36 36 H 1.07999 * 119.96642 * 180.02562 * 12 8 7 37 37 H 1.07995 * 120.03395 * 179.97438 * 13 12 8 38 38 H 1.08001 * 120.26845 * 180.30167 * 14 4 3 39 39 H 1.08005 * 120.78698 * 179.97438 * 15 14 4 40 40 H 0.97004 * 119.99233 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4893 1.1834 -0.0058 5 6 4.1727 2.4938 -0.0120 6 6 5.5690 2.5554 -0.0176 7 6 6.2027 3.7776 -0.0185 8 6 5.4542 4.9512 -0.0247 9 7 6.0982 6.1860 -0.0305 10 6 7.5559 6.2526 0.0993 11 6 5.3179 7.4184 -0.1666 12 6 4.0635 4.8932 -0.0245 13 6 3.4240 3.6740 -0.0177 14 6 4.2519 0.0093 -0.0001 15 6 3.6207 -1.2013 0.0057 16 6 2.2074 -1.2233 0.0058 17 6 1.5097 -2.4486 0.0110 18 1 0.5305 -2.5106 0.4626 19 6 2.0860 -3.5847 -0.5692 20 7 3.1525 -3.4673 -1.3176 21 14 1.3322 -5.2682 -0.2747 22 1 0.3217 -5.5490 -1.3260 23 1 2.3968 -6.3026 -0.3226 24 1 0.6788 -5.2918 1.0587 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3634 -0.8924 -0.5095 28 1 6.1503 1.6452 -0.0168 29 1 7.2816 3.8258 -0.0191 30 1 8.0109 6.2154 -0.8904 31 1 7.8345 7.1837 0.5926 32 1 7.9068 5.4080 0.6924 33 1 4.2699 7.1685 -0.3321 34 1 5.4108 8.0097 0.7444 35 1 5.6923 7.9939 -1.0132 36 1 3.4855 5.8055 -0.0297 37 1 2.3449 3.6296 -0.0171 38 1 5.3306 0.0608 0.0000 39 1 4.1878 -2.1205 0.0097 40 1 3.5521 -4.2547 -1.7193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240912946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = 55.590318 kcal Electronic energy + Delta-G solvation = -20795.569409 eV Core-core repulsion = 17767.621696 eV Total energy + Delta-G solvation = -3027.947713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.32680 -38.31908 -35.92631 -34.07717 -31.98020 -31.00291 -30.54494 -29.11539 -28.08321 -26.88113 -25.60544 -23.77597 -22.01714 -21.64887 -20.13827 -19.67364 -17.37089 -17.25910 -15.78557 -15.36958 -15.17135 -15.01080 -14.57865 -14.27629 -13.56029 -13.26300 -13.17402 -13.09571 -12.77710 -12.62055 -12.24153 -12.18350 -11.89053 -11.83336 -11.58639 -11.53152 -11.33319 -11.17510 -10.91098 -10.80186 -10.57366 -10.30759 -9.76257 -9.58567 -9.31723 -8.42664 -8.23839 -7.99682 -7.65556 -6.92647 -6.59594 -4.46147 1.77708 2.00017 2.74255 2.96672 2.98854 3.03274 3.22650 3.29864 3.80491 4.32699 4.74851 4.98025 5.06084 5.24268 5.36470 5.40013 5.53302 5.56898 5.62825 5.65621 5.68900 5.93234 5.99943 6.10004 6.19641 6.35743 6.48879 6.59197 6.66445 6.66804 6.77806 6.83841 6.91096 7.00340 7.13040 7.30568 7.34089 7.43035 7.47988 7.70562 7.82682 7.91222 7.96655 8.38675 8.61386 8.70112 9.64124 10.01198 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038238 B = 0.003401 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.089215 B = 8231.154403 C = 8867.604251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.010 3.990 3 N -0.454 5.454 4 C 0.020 3.980 5 C -0.037 4.037 6 C -0.084 4.084 7 C -0.192 4.192 8 C 0.185 3.815 9 N -0.644 5.644 10 C 0.099 3.901 11 C 0.094 3.906 12 C -0.196 4.196 13 C -0.063 4.063 14 C -0.135 4.135 15 C -0.133 4.133 16 C 0.071 3.929 17 C -0.438 4.438 18 H 0.086 0.914 19 C 0.071 3.929 20 N -0.788 5.788 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.986 11.277 1.603 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.134 4.134 3 N -0.162 5.162 4 C -0.115 4.115 5 C -0.039 4.039 6 C -0.104 4.104 7 C -0.214 4.214 8 C 0.086 3.914 9 N -0.359 5.359 10 C -0.044 4.044 11 C -0.050 4.050 12 C -0.218 4.218 13 C -0.082 4.082 14 C -0.155 4.155 15 C -0.159 4.159 16 C 0.067 3.933 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.413 5.413 21 Si 0.738 3.262 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.183 1.183 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.782 12.056 1.452 13.051 hybrid contribution 0.437 -1.609 -0.034 1.667 sum 5.220 10.448 1.418 11.765 Atomic orbital electron populations 1.20254 0.91114 1.01198 1.00294 1.21037 0.95115 0.88090 1.09180 1.66768 1.08672 1.30351 1.10459 1.18790 0.88952 0.90781 1.13023 1.18503 0.91890 0.92012 1.01500 1.20962 0.93799 0.96711 0.98940 1.20435 0.98646 0.91154 1.11151 1.17783 0.91595 0.84874 0.97189 1.46027 1.05267 1.03277 1.81289 1.21495 0.80445 1.01960 1.00543 1.21597 0.97173 0.86140 1.00056 1.20595 0.92049 0.98024 1.11160 1.21036 1.00165 0.90580 0.96441 1.21308 0.98582 0.93534 1.02107 1.21302 0.94771 0.96551 1.03233 1.18394 0.92467 0.93170 0.89318 1.19580 1.03389 0.92594 1.31234 0.89606 1.26030 0.94311 1.01621 0.92821 1.69781 1.17697 1.32377 1.21409 0.86206 0.79555 0.80254 0.80201 1.19249 1.19990 1.18268 0.93399 0.93239 0.91462 0.86210 0.86782 0.93983 0.92213 0.91496 0.90372 0.93621 0.93303 0.86648 0.85417 0.88182 0.85728 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 9.58 36.01 0.35 -1.14 16 2 C 0.01 0.26 6.86 -81.81 -0.56 -0.31 16 3 N -0.45 -11.28 9.30 -5.40 -0.05 -11.33 16 4 C 0.02 0.47 6.74 -82.76 -0.56 -0.09 16 5 C -0.04 -0.76 5.88 -104.85 -0.62 -1.38 16 6 C -0.08 -1.54 9.40 -39.22 -0.37 -1.91 16 7 C -0.19 -3.06 9.14 -39.43 -0.36 -3.42 16 8 C 0.18 2.88 6.54 -83.77 -0.55 2.33 16 9 N -0.64 -8.11 3.40 -187.51 -0.64 -8.74 16 10 C 0.10 0.97 10.08 59.85 0.60 1.57 16 11 C 0.09 0.93 10.59 59.85 0.63 1.56 16 12 C -0.20 -3.20 9.25 -39.43 -0.36 -3.57 16 13 C -0.06 -1.20 9.56 -39.21 -0.38 -1.57 16 14 C -0.13 -3.21 9.38 -39.54 -0.37 -3.58 16 15 C -0.13 -3.42 8.70 -39.02 -0.34 -3.76 16 16 C 0.07 1.86 5.55 -106.64 -0.59 1.26 16 17 C -0.44 -10.99 8.05 -37.88 -0.30 -11.29 16 18 H 0.09 2.03 6.99 -52.49 -0.37 1.66 16 19 C 0.07 1.69 5.24 -17.33 -0.09 1.60 16 20 N -0.79 -19.52 10.95 55.55 0.61 -18.91 16 21 Si 0.91 17.72 29.58 -169.99 -5.03 12.69 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 28 H 0.12 2.05 6.14 -52.49 -0.32 1.73 16 29 H 0.11 1.54 6.29 -52.49 -0.33 1.21 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 33 H 0.08 0.78 5.36 -51.93 -0.28 0.50 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.12 1.59 5.80 -52.49 -0.30 1.29 16 37 H 0.13 2.49 7.51 -52.49 -0.39 2.09 16 38 H 0.10 2.10 6.14 -52.49 -0.32 1.77 16 39 H 0.12 3.22 6.37 -52.48 -0.33 2.89 16 40 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -28.59 326.03 -9.07 -37.66 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.01 Total: 7.40 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -3.87 Total: -23.69 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.08 Total: -38.98 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.59 -9.07 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240912946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.254 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds