Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42899 * 113.99976 * 2 1 4 4 C 1.50698 * 109.47051 * 180.02562 * 3 2 1 5 5 C 1.38322 * 119.87891 * 90.00138 * 4 3 2 6 6 C 1.38016 * 120.11965 * 180.23508 * 5 4 3 7 7 C 1.39336 * 119.87476 * 359.51273 * 6 5 4 8 8 C 1.48396 * 120.12100 * 180.21257 * 7 6 5 9 9 C 1.39336 * 120.12513 * 179.97438 * 8 7 6 10 10 C 1.38016 * 119.87878 * 179.76829 * 9 8 7 11 11 C 1.38322 * 120.11959 * 0.50638 * 10 9 8 12 12 C 1.50697 * 119.87887 * 179.76767 * 11 10 9 13 13 C 1.50707 * 109.47202 * 269.97948 * 12 11 10 14 14 H 1.07996 * 119.99666 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00000 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99810 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46718 * 60.00731 * 17 15 13 19 19 H 1.48499 * 109.47085 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47354 * 300.00841 * 17 15 13 21 21 C 1.38326 * 120.24530 * 359.74931 * 11 10 9 22 22 C 1.38011 * 120.11830 * 359.97438 * 21 11 10 23 23 C 1.39334 * 119.76161 * 0.48041 * 7 6 5 24 24 C 1.38011 * 119.87865 * 359.75319 * 23 7 6 25 25 H 1.09000 * 109.46609 * 299.99695 * 1 2 3 26 26 H 1.08995 * 109.46933 * 59.99996 * 1 2 3 27 27 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46983 * 59.99865 * 3 2 1 29 29 H 1.09005 * 109.46857 * 300.00219 * 3 2 1 30 30 H 1.08002 * 119.93718 * 359.95017 * 5 4 3 31 31 H 1.07998 * 120.06292 * 179.72237 * 6 5 4 32 32 H 1.07998 * 120.05762 * 0.02632 * 9 8 7 33 33 H 1.08001 * 119.94240 * 180.23766 * 10 9 8 34 34 H 1.09003 * 109.47275 * 29.97606 * 12 11 10 35 35 H 1.09000 * 109.47523 * 149.98059 * 12 11 10 36 36 H 0.97000 * 120.00347 * 179.97438 * 16 15 13 37 37 H 1.08001 * 119.93649 * 179.97438 * 21 11 10 38 38 H 1.08004 * 120.05972 * 179.97438 * 22 21 11 39 39 H 1.08004 * 120.06129 * 179.77085 * 23 7 6 40 40 H 1.08001 * 119.94506 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1990 1.1323 -1.2003 6 6 5.5745 1.0184 -1.2067 7 6 6.2723 0.9683 -0.0017 8 6 7.7516 0.8506 -0.0022 9 6 8.4496 0.8010 1.2027 10 6 9.8250 0.6867 1.1963 11 6 10.5114 0.6320 -0.0034 12 6 12.0137 0.5125 -0.0040 13 6 12.6271 1.8891 -0.0048 14 1 11.9926 2.7630 -0.0045 15 6 13.9984 2.0327 -0.0050 16 7 14.7710 0.9685 -0.0049 17 14 14.7587 3.7390 -0.0068 18 1 14.3208 4.4772 1.2051 19 1 16.2390 3.6212 -0.0073 20 1 14.3206 4.4749 -1.2199 21 6 9.8240 0.6862 -1.2025 22 6 8.4482 0.7947 -1.2078 23 6 5.5758 1.0233 1.2038 24 6 4.2000 1.1323 1.1985 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.6573 1.1745 -2.1336 31 1 6.1091 0.9717 -2.1439 32 1 7.9150 0.8477 2.1399 33 1 10.3668 0.6443 2.1296 34 1 12.3355 -0.0281 0.8861 35 1 12.3348 -0.0288 -0.8939 36 1 15.7358 1.0696 -0.0054 37 1 10.3650 0.6435 -2.1363 38 1 7.9125 0.8374 -2.1446 39 1 6.1116 0.9811 2.1406 40 1 3.6590 1.1747 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240952044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -11.058332 kcal Electronic energy + Delta-G solvation = -20003.552200 eV Core-core repulsion = 16940.421634 eV Total energy + Delta-G solvation = -3063.130566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81693 -38.52760 -37.54883 -33.91336 -32.55789 -31.31007 -30.53778 -30.13122 -27.94201 -26.59898 -25.15518 -23.33706 -23.17561 -21.44033 -21.17495 -19.91083 -17.22738 -16.66083 -16.33075 -16.19913 -15.97587 -15.20616 -15.02204 -14.51582 -13.94944 -13.93369 -13.85062 -13.63741 -13.12739 -12.71459 -12.53506 -12.52657 -12.45142 -11.97249 -11.57061 -11.37082 -11.35210 -11.12966 -10.95508 -10.66050 -10.55094 -10.15223 -10.01095 -9.71024 -9.51670 -9.01067 -8.94726 -8.44882 -8.35504 -7.42553 -6.06448 -4.10926 0.87346 1.41897 2.02011 2.25492 3.30700 3.34780 3.37886 3.48548 3.99230 4.38875 4.58926 4.64947 4.65249 4.85936 4.95292 4.96318 5.00189 5.06494 5.12543 5.27625 5.31960 5.35711 5.47618 5.50459 5.55909 5.90225 5.94998 5.99637 6.11718 6.18159 6.29380 6.50614 6.54039 6.59258 6.68660 6.81604 6.96224 7.10150 7.13817 7.14129 7.46603 7.66325 7.80381 7.88797 8.28191 8.94008 9.52972 11.03106 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.045195 B = 0.002587 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.395058 B =10820.371510 C =10830.798156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.110 4.110 5 C -0.094 4.094 6 C -0.123 4.123 7 C -0.010 4.010 8 C -0.093 4.093 9 C -0.105 4.105 10 C -0.126 4.126 11 C -0.022 4.022 12 C 0.045 3.955 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.126 4.126 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.094 4.094 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.971 -0.219 0.010 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.010 4.010 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.144 4.144 11 C -0.022 4.022 12 C 0.008 3.992 13 C -0.551 4.551 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.144 4.144 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.671 -0.440 0.010 24.675 hybrid contribution 0.308 1.187 0.000 1.226 sum -24.363 0.747 0.010 24.375 Atomic orbital electron populations 1.22756 0.81186 1.02817 0.99905 1.88004 1.19421 1.27664 1.95372 1.21327 0.90175 0.84905 1.00645 1.19504 0.93608 1.04188 0.93723 1.20907 0.94068 0.98961 0.97232 1.21229 0.93820 1.01170 0.97881 1.18950 0.92409 0.96550 0.93088 1.18533 0.90712 1.06183 0.93894 1.21105 0.94370 1.00172 0.96593 1.21048 0.93226 1.01578 0.98529 1.20830 0.98851 0.90616 0.91933 1.18405 0.84433 0.97809 0.98526 1.21000 0.91184 0.91606 1.51305 0.92494 1.25014 0.97239 0.96947 0.95132 1.69943 1.04451 1.28565 1.50279 0.86581 0.77940 0.84319 0.78759 1.20143 1.21212 1.20147 1.21047 0.93213 1.01581 0.98535 1.21106 0.94372 1.00182 0.96587 1.21228 0.93822 1.01177 0.97875 1.20907 0.94057 0.98967 0.97239 0.94097 0.94089 0.89585 0.92588 0.92594 0.86139 0.85531 0.86694 0.86119 0.95186 0.95185 0.92739 0.86118 0.86694 0.85532 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -4.07 10.69 -35.23 -0.38 -4.45 16 3 C 0.11 0.97 6.06 36.00 0.22 1.19 16 4 C -0.11 -1.26 5.51 -104.56 -0.58 -1.84 16 5 C -0.09 -1.09 9.68 -39.63 -0.38 -1.47 16 6 C -0.12 -1.59 9.43 -39.25 -0.37 -1.96 16 7 C -0.01 -0.14 5.88 -104.90 -0.62 -0.76 16 8 C -0.09 -1.54 5.88 -104.89 -0.62 -2.15 16 9 C -0.10 -1.76 9.43 -39.25 -0.37 -2.13 16 10 C -0.13 -2.44 9.68 -39.63 -0.38 -2.82 16 11 C -0.02 -0.48 5.07 -104.56 -0.53 -1.01 16 12 C 0.04 1.15 5.10 -29.03 -0.15 1.00 16 13 C -0.51 -14.28 9.09 -34.44 -0.31 -14.60 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.13 -2.44 9.68 -39.63 -0.38 -2.82 16 22 C -0.10 -1.76 9.43 -39.25 -0.37 -2.13 16 23 C -0.12 -1.59 9.43 -39.26 -0.37 -1.96 16 24 C -0.09 -1.09 9.68 -39.63 -0.38 -1.47 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.47 6.21 -52.49 -0.33 1.14 16 32 H 0.12 1.61 6.21 -52.49 -0.33 1.29 16 33 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 34 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 38 H 0.12 1.61 6.21 -52.48 -0.33 1.29 16 39 H 0.13 1.47 6.21 -52.48 -0.33 1.14 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -30.92 340.20 -9.60 -40.52 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.48 Total: -0.06 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -4.58 Total: -32.08 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.92 -9.60 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240952044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.464 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds