Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47309 * 2 1 4 4 C 1.35781 * 117.00213 * 179.97438 * 3 2 1 5 5 C 1.38552 * 120.14094 * 0.02562 * 4 3 2 6 6 C 1.38194 * 120.08997 * 179.97438 * 5 4 3 7 7 C 1.38512 * 120.37595 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.85710 * 180.27894 * 7 6 5 9 9 C 1.37856 * 120.28168 * 0.02562 * 7 6 5 10 10 C 1.39661 * 119.90614 * 359.97438 * 9 7 6 11 11 C 1.47728 * 120.18963 * 180.02562 * 10 9 7 12 12 C 1.39248 * 120.34239 * 64.72127 * 11 10 9 13 13 C 1.38024 * 119.97840 * 179.74996 * 12 11 10 14 14 C 1.38965 * 120.68750 * 0.56067 * 13 12 11 15 15 C 1.36409 * 120.69729 * 359.69351 * 14 13 12 16 16 C 1.40764 * 119.99419 * 0.02562 * 15 14 13 17 17 C 1.40837 * 120.33835 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00099 * 205.25253 * 17 16 15 19 19 C 1.40054 * 119.99988 * 25.25436 * 17 16 15 20 20 N 1.30788 * 120.00132 * 15.49646 * 19 17 16 21 21 Si 1.86794 * 119.99918 * 195.50257 * 19 17 16 22 22 H 1.48506 * 109.47454 * 60.00129 * 21 19 17 23 23 H 1.48505 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47250 * 299.99539 * 21 19 17 25 25 H 1.09004 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47169 * 299.99748 * 1 2 3 27 27 H 1.08996 * 109.47179 * 60.00052 * 1 2 3 28 28 H 1.09002 * 109.47169 * 240.00252 * 2 1 3 29 29 H 1.09003 * 109.47432 * 120.00267 * 2 1 3 30 30 H 1.08000 * 119.95594 * 359.97438 * 5 4 3 31 31 H 1.08002 * 119.80878 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47643 * 269.72968 * 8 7 6 33 33 H 1.09001 * 109.47499 * 29.72877 * 8 7 6 34 34 H 1.08996 * 109.46974 * 149.72871 * 8 7 6 35 35 H 1.08001 * 120.04815 * 179.97438 * 9 7 6 36 36 H 1.07999 * 120.00584 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.65761 * 180.27604 * 13 12 11 38 38 H 1.07996 * 119.65100 * 179.72128 * 14 13 12 39 39 H 1.07997 * 120.00322 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00209 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3524 1.5251 0.0005 5 6 4.1991 0.4284 0.0005 6 6 5.5690 0.6107 0.0005 7 6 6.1057 1.8877 0.0000 8 6 7.6012 2.0729 -0.0063 9 6 5.2775 2.9897 0.0000 10 6 3.8914 2.8192 0.0000 11 6 2.9981 3.9958 -0.0005 12 6 2.9815 4.8659 -1.0876 13 6 2.1402 5.9600 -1.0824 14 6 1.3125 6.2131 0.0048 15 6 1.3100 5.3820 1.0865 16 6 2.1522 4.2544 1.1094 17 6 2.1551 3.3911 2.2222 18 1 3.0296 2.7970 2.4425 19 6 1.0238 3.3032 3.0432 20 7 -0.1242 3.7716 2.6270 21 14 1.1547 2.5170 4.7326 22 1 2.1365 3.2696 5.5542 23 1 -0.1730 2.5480 5.3971 24 1 1.6046 1.1091 4.5899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7880 -0.5703 0.0005 31 1 6.2248 -0.2474 0.0001 32 1 7.9658 2.1209 1.0198 33 1 8.0693 1.2327 -0.5192 34 1 7.8504 2.9991 -0.5241 35 1 5.7000 3.9837 0.0001 36 1 3.6236 4.6821 -1.9363 37 1 2.1283 6.6291 -1.9302 38 1 0.6641 7.0767 -0.0069 39 1 0.6619 5.5891 1.9252 40 1 -0.9076 3.7110 3.1958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241146836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -7.340967 kcal Electronic energy + Delta-G solvation = -22183.350653 eV Core-core repulsion = 19120.381284 eV Total energy + Delta-G solvation = -3062.969369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.54604 -37.40677 -36.86390 -33.60814 -32.36570 -31.14207 -30.54275 -29.49231 -28.08410 -25.72699 -25.15298 -23.43672 -22.01563 -20.84964 -20.41239 -19.31666 -17.50439 -17.10103 -15.53737 -15.39274 -15.26028 -14.86574 -14.15422 -13.88391 -13.53437 -13.42933 -13.12412 -12.92638 -12.57399 -12.40542 -12.22312 -12.14441 -11.80125 -11.55804 -11.23198 -11.15452 -11.09856 -11.00224 -10.92316 -10.63788 -10.40171 -10.19673 -10.03174 -9.60422 -9.29967 -9.12411 -8.21713 -7.45733 -7.30246 -7.02274 -6.67491 -4.25888 1.95320 2.10540 2.83900 3.05672 3.08748 3.10691 3.30123 3.94985 3.95774 4.41674 4.70868 5.26922 5.36565 5.40345 5.45716 5.49582 5.64225 5.69364 5.76932 5.89648 5.90671 5.99541 6.14259 6.22486 6.25040 6.30430 6.36448 6.48354 6.55945 6.64795 6.80544 6.95120 7.09466 7.13311 7.20915 7.31295 7.46320 7.51285 7.67082 7.98178 8.09275 8.18353 8.31018 8.36273 8.69367 8.95086 9.05748 10.22390 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.008121 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.611063 B = 3447.212131 C = 4147.080209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.274 6.274 4 C 0.145 3.855 5 C -0.219 4.219 6 C -0.103 4.103 7 C -0.136 4.136 8 C -0.102 4.102 9 C -0.088 4.088 10 C -0.008 4.008 11 C -0.175 4.175 12 C -0.073 4.073 13 C -0.248 4.248 14 C -0.103 4.103 15 C -0.162 4.162 16 C 0.138 3.862 17 C -0.432 4.432 18 H 0.073 0.927 19 C 0.080 3.920 20 N -0.788 5.788 21 Si 0.899 3.101 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.266 1.266 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -6.389 -2.513 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.186 6.186 4 C 0.098 3.902 5 C -0.238 4.238 6 C -0.121 4.121 7 C -0.137 4.137 8 C -0.158 4.158 9 C -0.106 4.106 10 C -0.008 4.008 11 C -0.177 4.177 12 C -0.091 4.091 13 C -0.267 4.267 14 C -0.122 4.122 15 C -0.181 4.181 16 C 0.135 3.865 17 C -0.462 4.462 18 H 0.091 0.909 19 C -0.138 4.138 20 N -0.413 5.413 21 Si 0.723 3.277 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.191 1.191 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.745 -6.238 -2.433 8.207 hybrid contribution -0.058 -0.729 0.793 1.079 sum 4.688 -6.967 -1.640 8.555 Atomic orbital electron populations 1.21691 0.93271 1.01466 1.04071 1.22620 0.95842 0.83618 0.99906 1.86364 1.18363 1.26537 1.87378 1.19206 0.82603 0.93205 0.95142 1.21038 0.94308 0.97489 1.10922 1.20567 0.93970 0.96056 1.01513 1.19568 0.95374 0.93142 1.05567 1.20629 0.92115 1.01626 1.01467 1.20987 0.91706 0.97922 0.99989 1.18161 0.92069 0.90695 0.99919 1.18358 1.06012 0.96746 0.96574 1.20504 0.97912 0.94599 0.96100 1.20202 1.04952 1.01620 0.99923 1.20439 0.98329 0.98456 0.94969 1.21069 1.03146 0.95174 0.98686 1.17440 0.88479 0.90425 0.90150 1.19340 0.99351 1.20190 1.07279 0.90873 1.25857 0.94699 0.94178 0.99084 1.69808 0.99802 1.35680 1.35983 0.86517 0.78340 0.80500 0.82323 1.18815 1.20327 1.19083 0.91517 0.91014 0.91810 0.93344 0.92968 0.86525 0.87128 0.92089 0.92483 0.92156 0.86165 0.89590 0.89728 0.89781 0.86320 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 37.16 0.38 -1.93 16 2 C 0.06 0.96 5.46 37.16 0.20 1.16 16 3 O -0.27 -6.08 8.70 -19.05 -0.17 -6.25 16 4 C 0.14 3.10 5.97 -38.74 -0.23 2.87 16 5 C -0.22 -3.95 9.03 -39.48 -0.36 -4.31 16 6 C -0.10 -1.70 9.68 -39.50 -0.38 -2.08 16 7 C -0.14 -2.30 5.87 -104.66 -0.61 -2.92 16 8 C -0.10 -1.32 10.01 36.00 0.36 -0.96 16 9 C -0.09 -1.71 9.38 -39.19 -0.37 -2.08 16 10 C -0.01 -0.17 4.39 -104.76 -0.46 -0.63 16 11 C -0.18 -4.34 4.99 -104.23 -0.52 -4.86 16 12 C -0.07 -1.71 9.73 -39.28 -0.38 -2.09 16 13 C -0.25 -5.74 10.03 -39.39 -0.40 -6.13 16 14 C -0.10 -2.49 9.96 -39.97 -0.40 -2.89 16 15 C -0.16 -4.24 8.63 -39.29 -0.34 -4.58 16 16 C 0.14 3.67 5.41 -106.55 -0.58 3.09 16 17 C -0.43 -11.40 7.38 -37.92 -0.28 -11.68 16 18 H 0.07 1.95 7.08 -52.49 -0.37 1.58 16 19 C 0.08 1.99 5.18 -17.32 -0.09 1.90 16 20 N -0.79 -20.07 10.86 55.55 0.60 -19.47 16 21 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 29 H 0.05 0.84 7.66 -51.93 -0.40 0.45 16 30 H 0.12 1.82 6.30 -52.49 -0.33 1.49 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.19 6.12 -52.49 -0.32 2.87 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 334.01 15.07 5.03 5.03 Total: -1.00 -28.36 334.01 -9.61 -37.97 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.60 Total: 6.96 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: -4.45 Total: -38.12 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.60 Total: -19.47 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.17 Total: -6.25 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.36 -9.61 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241146836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.629 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds