Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47081 * 2 1 4 4 C 1.35812 * 117.00124 * 179.97438 * 3 2 1 5 5 C 1.38984 * 119.90494 * 0.02562 * 4 3 2 6 6 C 1.37746 * 120.08958 * 180.02562 * 5 4 3 7 7 C 1.39753 * 119.90730 * 359.97438 * 6 5 4 8 8 C 1.47770 * 120.09595 * 179.97438 * 7 6 5 9 9 C 1.39236 * 120.34123 * 129.99333 * 8 7 6 10 10 C 1.38030 * 119.97607 * 179.97438 * 9 8 7 11 11 C 1.38958 * 120.68819 * 0.02562 * 10 9 8 12 12 C 1.36417 * 120.69540 * 359.97438 * 11 10 9 13 13 C 1.40762 * 119.98830 * 359.74753 * 12 11 10 14 14 C 1.40847 * 120.33167 * 180.25115 * 13 12 11 15 15 H 1.08003 * 119.99924 * 153.70209 * 14 13 12 16 16 C 1.40046 * 119.99954 * 333.69905 * 14 13 12 17 17 N 1.30786 * 120.00240 * 343.04375 * 16 14 13 18 18 Si 1.86805 * 119.99719 * 163.04459 * 16 14 13 19 19 H 1.48506 * 109.47039 * 60.00017 * 18 16 14 20 20 H 1.48501 * 109.47088 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47248 * 299.99823 * 18 16 14 22 22 C 1.39723 * 119.81599 * 359.97438 * 7 6 5 23 23 C 1.37780 * 119.90779 * 359.97438 * 22 7 6 24 24 C 1.50700 * 119.95322 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.46661 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47315 * 299.99827 * 1 2 3 27 27 H 1.08994 * 109.47108 * 60.00136 * 1 2 3 28 28 H 1.08999 * 109.47315 * 240.00173 * 2 1 3 29 29 H 1.09002 * 109.47579 * 120.00289 * 2 1 3 30 30 H 1.07992 * 119.95777 * 359.97438 * 5 4 3 31 31 H 1.08005 * 120.04321 * 179.69976 * 6 5 4 32 32 H 1.07995 * 120.01083 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.65756 * 179.97438 * 10 9 8 34 34 H 1.07995 * 119.65927 * 179.97438 * 11 10 9 35 35 H 1.07997 * 120.00018 * 180.02562 * 12 11 10 36 36 H 0.97000 * 120.00157 * 180.02562 * 17 16 14 37 37 H 1.08005 * 120.04567 * 179.97438 * 22 7 6 38 38 H 1.09008 * 109.46978 * 270.02152 * 24 23 22 39 39 H 1.08997 * 109.47260 * 30.02359 * 24 23 22 40 40 H 1.08996 * 109.47086 * 150.02682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1976 0.4217 0.0005 6 6 5.5637 0.5978 0.0016 7 6 6.0999 1.8884 0.0022 8 6 7.5649 2.0822 0.0039 9 6 8.1620 2.9400 -0.9160 10 6 9.5310 3.1158 -0.9073 11 6 10.3265 2.4435 0.0126 12 6 9.7707 1.5966 0.9262 13 6 8.3770 1.4004 0.9470 14 6 7.7950 0.5316 1.8906 15 1 6.7722 0.6813 2.2035 16 6 8.5425 -0.5262 2.4229 17 7 9.6388 -0.9174 1.8266 18 14 7.9737 -1.3786 3.9848 19 1 6.6270 -1.9652 3.7663 20 1 8.9317 -2.4572 4.3371 21 1 7.9099 -0.3914 5.0923 22 6 5.2470 2.9951 0.0011 23 6 3.8817 2.8101 -0.0010 24 6 2.9608 4.0030 -0.0028 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7825 -0.5752 0.0005 31 1 6.2196 -0.2603 0.0065 32 1 7.5541 3.4682 -1.6356 33 1 9.9888 3.7820 -1.6235 34 1 11.3960 2.5931 0.0043 35 1 10.3995 1.0802 1.6363 36 1 10.1564 -1.6504 2.1951 37 1 5.6574 3.9941 0.0020 38 1 2.7374 4.2911 1.0246 39 1 3.4438 4.8342 -0.5164 40 1 2.0349 3.7465 -0.5176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241196749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = -13.878015 kcal Electronic energy + Delta-G solvation = -21363.951249 eV Core-core repulsion = 18300.698412 eV Total energy + Delta-G solvation = -3063.252837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.75505 -37.98190 -36.53084 -33.73811 -32.68906 -31.45765 -30.67910 -29.62523 -27.71513 -26.10240 -25.25248 -23.82094 -21.84349 -21.17291 -20.41693 -19.34668 -17.66412 -17.25791 -15.91413 -15.60184 -15.50037 -14.98502 -14.20800 -13.82718 -13.62370 -13.46855 -13.27578 -12.82206 -12.63385 -12.55227 -12.50947 -12.46162 -11.89665 -11.67369 -11.49855 -11.36630 -11.23189 -11.13218 -11.00242 -10.63457 -10.49118 -10.39765 -10.19910 -9.58576 -9.41638 -9.22973 -8.21675 -7.80411 -7.42417 -7.02090 -6.76241 -4.38167 1.94748 2.02779 2.77814 3.02406 3.04282 3.06503 3.21795 3.51486 3.88199 4.44823 4.59527 4.94237 5.01350 5.24732 5.30941 5.41475 5.51669 5.65362 5.67563 5.76038 5.86521 5.97548 5.99249 6.04981 6.16049 6.18338 6.22821 6.36935 6.47200 6.62295 6.75356 6.99656 7.02116 7.07650 7.18245 7.29049 7.40475 7.50072 7.56346 7.84559 7.94414 8.03879 8.08293 8.23990 8.57452 8.82158 8.92131 10.10505 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.005897 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.150669 B = 4746.693741 C = 6289.823230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.098 3.902 5 C -0.207 4.207 6 C -0.063 4.063 7 C -0.010 4.010 8 C -0.182 4.182 9 C -0.073 4.073 10 C -0.243 4.243 11 C -0.103 4.103 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.452 4.452 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.789 5.789 18 Si 0.903 3.097 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.282 0.718 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 0.929 -1.687 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.235 6.235 4 C 0.054 3.946 5 C -0.226 4.226 6 C -0.081 4.081 7 C -0.010 4.010 8 C -0.183 4.183 9 C -0.091 4.091 10 C -0.263 4.263 11 C -0.121 4.121 12 C -0.178 4.178 13 C 0.127 3.873 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.414 5.414 18 Si 0.727 3.273 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.113 4.113 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.982 0.873 -1.671 11.142 hybrid contribution 0.071 -0.849 0.709 1.109 sum -10.911 0.024 -0.961 10.953 Atomic orbital electron populations 1.21751 0.93349 1.02403 1.03165 1.22656 0.95204 0.82929 1.01245 1.85946 1.19825 1.28193 1.89527 1.18721 0.81468 0.93665 1.00764 1.21080 0.94566 0.97074 1.09886 1.21234 0.93265 0.97899 0.95733 1.18730 0.93044 0.91824 0.97441 1.18578 0.90453 1.07849 1.01456 1.20573 0.94183 0.97101 0.97260 1.20267 0.93694 1.07752 1.04558 1.20472 0.97341 0.97650 0.96643 1.21024 0.95626 1.00334 1.00853 1.17527 0.91240 0.89162 0.89339 1.19530 0.99671 1.09106 1.19786 0.89969 1.25925 0.94070 0.96760 0.97354 1.69797 1.13308 1.22504 1.35760 0.86434 0.79573 0.79059 0.82186 1.18882 1.20292 1.18725 1.21011 0.91046 0.98702 1.00531 1.18995 0.94001 0.91974 1.07481 1.20510 0.98267 0.95038 1.01546 0.90790 0.91754 0.91789 0.92437 0.92351 0.86501 0.85099 0.89248 0.89493 0.89553 0.86551 0.90694 0.86135 0.92141 0.92255 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.68 5.46 37.16 0.20 0.88 16 3 O -0.32 -5.04 9.16 -19.15 -0.18 -5.21 16 4 C 0.10 1.75 6.67 -39.04 -0.26 1.48 16 5 C -0.21 -3.79 9.02 -39.48 -0.36 -4.15 16 6 C -0.06 -1.32 8.01 -39.20 -0.31 -1.64 16 7 C -0.01 -0.22 4.92 -104.88 -0.52 -0.74 16 8 C -0.18 -4.36 5.52 -104.23 -0.58 -4.93 16 9 C -0.07 -1.64 9.51 -39.29 -0.37 -2.02 16 10 C -0.24 -5.44 10.03 -39.39 -0.40 -5.83 16 11 C -0.10 -2.39 9.96 -39.97 -0.40 -2.79 16 12 C -0.16 -4.06 8.62 -39.28 -0.34 -4.40 16 13 C 0.13 3.36 5.55 -106.55 -0.59 2.76 16 14 C -0.45 -11.51 7.12 -37.92 -0.27 -11.78 16 15 H 0.08 2.09 6.64 -52.48 -0.35 1.74 16 16 C 0.08 1.88 5.14 -17.32 -0.09 1.79 16 17 N -0.79 -19.69 11.02 55.55 0.61 -19.08 16 18 Si 0.90 18.39 29.59 -169.99 -5.03 13.36 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.09 -1.83 9.16 -39.19 -0.36 -2.19 16 23 C -0.12 -2.20 5.89 -104.53 -0.62 -2.82 16 24 C -0.10 -1.40 9.78 36.01 0.35 -1.04 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 29 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 30 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 31 H 0.13 2.90 7.32 -52.48 -0.38 2.51 16 32 H 0.09 1.81 8.04 -52.49 -0.42 1.39 16 33 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.12 3.04 6.26 -52.49 -0.33 2.71 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 37 H 0.12 2.18 8.04 -52.48 -0.42 1.76 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.06 0.87 7.52 -51.93 -0.39 0.48 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -27.08 332.22 -9.61 -36.70 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.51 Total: 7.64 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: -4.52 Total: -38.41 kcal Atomic # 7 Polarization: -19.69 SS G_CDS: 0.61 Total: -19.08 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.21 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.08 -9.61 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241196749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.820 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds