Wall clock time and date at job start Tue Mar 31 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38107 * 120.79784 * 2 1 4 4 C 1.39195 * 119.22256 * 180.21675 * 3 2 1 5 5 N 1.38918 * 119.57308 * 179.75336 * 4 3 2 6 6 C 1.46500 * 120.00270 * 4.72897 * 5 4 3 7 7 C 1.46502 * 119.99649 * 184.45197 * 5 4 3 8 8 N 1.32466 * 120.85248 * 359.47620 * 4 3 2 9 9 C 1.31791 * 121.74391 * 0.27809 * 8 4 3 10 10 C 1.39195 * 120.68707 * 359.97090 * 9 8 4 11 11 C 1.48378 * 120.45426 * 179.97438 * 10 9 8 12 12 C 1.39745 * 120.00077 * 129.99990 * 11 10 9 13 13 C 1.38390 * 120.37784 * 179.97438 * 12 11 10 14 14 C 1.37723 * 120.37856 * 359.97438 * 13 12 11 15 15 C 1.40756 * 119.99366 * 0.02562 * 14 13 12 16 16 C 1.41427 * 120.18442 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99796 * 150.20485 * 16 15 14 18 18 C 1.39927 * 120.00354 * 330.20369 * 16 15 14 19 19 N 1.30826 * 120.00472 * 161.72088 * 18 16 15 20 20 Si 1.86798 * 119.99523 * 341.71940 * 18 16 15 21 21 H 1.48505 * 109.47386 * 95.41551 * 20 18 16 22 22 H 1.48506 * 109.47218 * 215.41240 * 20 18 16 23 23 H 1.48499 * 109.47515 * 335.41167 * 20 18 16 24 24 C 1.38750 * 120.00340 * 309.72872 * 11 10 9 25 25 H 1.08997 * 109.46803 * 270.29496 * 1 2 3 26 26 H 1.08998 * 109.47179 * 30.30165 * 1 2 3 27 27 H 1.09002 * 109.46349 * 150.30084 * 1 2 3 28 28 H 1.08005 * 120.38749 * 359.97438 * 3 2 1 29 29 H 1.08992 * 109.47238 * 269.72487 * 6 5 4 30 30 H 1.08999 * 109.47242 * 29.72711 * 6 5 4 31 31 H 1.09007 * 109.47043 * 149.72171 * 6 5 4 32 32 H 1.08999 * 109.47165 * 270.27107 * 7 5 4 33 33 H 1.09000 * 109.47333 * 30.27759 * 7 5 4 34 34 H 1.09002 * 109.46887 * 150.27673 * 7 5 4 35 35 H 1.08003 * 119.65726 * 179.97438 * 9 8 4 36 36 H 1.07997 * 119.81226 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.81126 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.00502 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00171 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.18334 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1863 0.0000 4 6 3.6056 1.1480 -0.0046 5 7 4.3241 2.3370 -0.0098 6 6 3.6213 3.6181 0.0941 7 6 5.7852 2.3093 -0.1132 8 7 4.2534 -0.0074 0.0015 9 6 3.6149 -1.1603 0.0066 10 6 2.2236 -1.2018 0.0063 11 6 1.5100 -2.5027 0.0115 12 6 0.4917 -2.7374 0.9393 13 6 -0.1793 -3.9477 0.9508 14 6 0.1485 -4.9344 0.0476 15 6 1.1717 -4.7149 -0.8938 16 6 1.5120 -5.7255 -1.8228 17 1 1.8988 -5.4574 -2.7948 18 6 1.3476 -7.0728 -1.4825 19 7 1.3118 -7.9847 -2.4199 20 14 1.1792 -7.5694 0.3104 21 1 -0.2597 -7.6814 0.6600 22 1 1.8443 -8.8796 0.5257 23 1 1.8192 -6.5421 1.1708 24 6 1.8500 -3.4842 -0.9084 25 1 -0.3633 0.0053 1.0276 26 1 -0.3633 0.8872 -0.5185 27 1 -0.3632 -0.8927 -0.5092 28 1 1.6936 2.1326 -0.0004 29 1 3.3753 3.9797 -0.9043 30 1 2.7044 3.4841 0.6681 31 1 4.2612 4.3440 0.5960 32 1 6.2192 2.2587 0.8854 33 1 6.0924 1.4353 -0.6876 34 1 6.1312 3.2133 -0.6143 35 1 4.1771 -2.0825 0.0110 36 1 0.2263 -1.9697 1.6509 37 1 -0.9646 -4.1195 1.6721 38 1 -0.3793 -5.8765 0.0617 39 1 1.1975 -8.9185 -2.1841 40 1 2.6332 -3.3043 -1.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241244238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:43 Heat of formation + Delta-G solvation = 57.291273 kcal Electronic energy + Delta-G solvation = -21103.789604 eV Core-core repulsion = 18075.915650 eV Total energy + Delta-G solvation = -3027.873954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17153 -37.88408 -36.38399 -33.96629 -33.28628 -31.42328 -30.29036 -28.88869 -28.30878 -27.01389 -25.23874 -24.72321 -22.63945 -21.28188 -20.54264 -19.95690 -17.36322 -16.87623 -16.48483 -15.90042 -15.31138 -14.89061 -14.64229 -14.27897 -14.13204 -13.88718 -13.45904 -12.99723 -12.71780 -12.67810 -12.54711 -12.46065 -12.38303 -12.06210 -11.95752 -11.92912 -11.64468 -11.26451 -10.77217 -10.69848 -10.33125 -9.91543 -9.68744 -9.56122 -9.26007 -9.07992 -9.02043 -7.85155 -7.64923 -7.01871 -6.92733 -4.47396 1.53037 1.63431 2.63055 2.70370 2.98565 3.12674 3.23537 3.34042 4.00101 4.18200 4.51689 4.69357 4.91489 5.09897 5.18320 5.20066 5.34517 5.35213 5.41424 5.50047 5.53252 5.57925 5.76374 5.82209 5.92275 5.98665 6.06500 6.23345 6.27244 6.34772 6.51349 6.66751 6.74131 6.90092 6.94079 7.02846 7.16187 7.41757 7.49078 7.61866 7.75523 7.87825 8.09490 8.36938 8.43130 8.65850 8.81980 10.09996 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003990 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.897980 B = 7015.622931 C = 7519.523392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.005 3.995 3 C -0.241 4.241 4 C 0.387 3.613 5 N -0.625 5.625 6 C 0.100 3.900 7 C 0.105 3.895 8 N -0.544 5.544 9 C 0.156 3.844 10 C -0.129 4.129 11 C -0.012 4.012 12 C -0.225 4.225 13 C -0.080 4.080 14 C -0.236 4.236 15 C 0.093 3.907 16 C -0.450 4.450 17 H 0.090 0.910 18 C 0.085 3.915 19 N -0.811 5.811 20 Si 0.911 3.089 21 H -0.271 1.271 22 H -0.292 1.292 23 H -0.244 1.244 24 C -0.189 4.189 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 17.142 5.571 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.003 4.003 3 C -0.265 4.265 4 C 0.154 3.846 5 N -0.341 5.341 6 C -0.044 4.044 7 C -0.038 4.038 8 N -0.261 5.261 9 C -0.001 4.001 10 C -0.133 4.133 11 C -0.013 4.013 12 C -0.244 4.244 13 C -0.099 4.099 14 C -0.255 4.255 15 C 0.090 3.910 16 C -0.479 4.479 17 H 0.108 0.892 18 C -0.134 4.134 19 N -0.435 5.435 20 Si 0.737 3.263 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.167 1.167 24 C -0.209 4.209 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.249 17.061 5.419 18.194 hybrid contribution -0.955 -0.399 0.677 1.237 sum 2.294 16.663 6.097 17.891 Atomic orbital electron populations 1.20888 0.90449 1.03231 1.02521 1.20099 0.96363 0.91416 0.92391 1.21127 0.92641 0.98691 1.14077 1.18258 0.87848 0.86163 0.92300 1.46039 1.05801 1.02515 1.79771 1.21608 0.97574 0.84109 1.01079 1.21459 0.79158 1.02238 1.00964 1.67089 1.40556 0.97283 1.21176 1.22594 0.91055 0.94349 0.92116 1.19687 0.93960 0.93474 1.06204 1.18168 0.95684 0.90791 0.96623 1.20393 1.02413 0.98072 1.03549 1.20523 0.98130 0.93804 0.97412 1.21081 1.02354 0.99438 1.02621 1.17642 0.89699 0.92690 0.90933 1.19471 1.37433 0.89468 1.01479 0.89217 1.26129 0.90806 0.96458 0.99976 1.69698 1.35304 1.03050 1.35448 0.86324 0.79080 0.77788 0.83072 1.19743 1.21934 1.16690 1.21097 1.02864 0.95045 1.01869 0.90829 0.92120 0.89732 0.85599 0.93329 0.91305 0.91484 0.93861 0.90553 0.92372 0.82533 0.88788 0.88815 0.88316 0.90520 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.52 36.01 0.31 -1.28 16 2 C 0.01 0.08 5.90 -104.04 -0.61 -0.53 16 3 C -0.24 -3.50 8.88 -39.27 -0.35 -3.85 16 4 C 0.39 5.96 7.37 -155.02 -1.14 4.82 16 5 N -0.63 -7.70 3.39 -189.65 -0.64 -8.34 16 6 C 0.10 0.85 10.06 59.85 0.60 1.45 16 7 C 0.11 1.11 10.41 59.85 0.62 1.73 16 8 N -0.54 -9.32 9.14 -12.17 -0.11 -9.43 16 9 C 0.16 2.78 10.67 -17.21 -0.18 2.59 16 10 C -0.13 -2.37 5.48 -104.74 -0.57 -2.94 16 11 C -0.01 -0.24 4.78 -104.97 -0.50 -0.75 16 12 C -0.22 -4.53 7.99 -38.96 -0.31 -4.84 16 13 C -0.08 -1.70 10.01 -39.71 -0.40 -2.10 16 14 C -0.24 -5.61 7.17 -38.82 -0.28 -5.89 16 15 C 0.09 2.34 5.10 -106.87 -0.55 1.79 16 16 C -0.45 -12.15 9.57 -37.74 -0.36 -12.51 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.08 2.23 5.40 -17.35 -0.09 2.13 16 19 N -0.81 -21.71 13.93 55.55 0.77 -20.93 16 20 Si 0.91 20.86 24.52 -169.99 -4.17 16.69 16 21 H -0.27 -6.02 6.71 56.52 0.38 -5.64 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.24 -5.72 6.86 56.52 0.39 -5.33 16 24 C -0.19 -4.36 9.26 -38.53 -0.36 -4.71 16 25 H 0.07 0.94 7.58 -51.93 -0.39 0.54 16 26 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.34 6.58 -51.93 -0.34 1.00 16 28 H 0.13 1.48 6.23 -52.48 -0.33 1.15 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.55 6.34 -51.93 -0.33 0.23 16 31 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.92 7.45 -51.93 -0.39 0.54 16 34 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.16 2.67 8.04 -52.48 -0.42 2.25 16 36 H 0.09 1.69 6.93 -52.49 -0.36 1.33 16 37 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.10 2.36 4.72 -52.49 -0.25 2.11 16 39 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 40 H 0.10 2.26 8.05 -52.48 -0.42 1.84 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -28.98 325.08 -8.78 -37.76 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.36 Total: 4.24 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -4.18 Total: -24.88 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.02 Total: -38.71 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.17 Total: 16.69 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.98 -8.78 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241244238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.050 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds