Wall clock time and date at job start Tue Mar 31 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38107 * 120.79784 * 2 1 4 4 C 1.39195 * 119.22256 * 180.21675 * 3 2 1 5 5 N 1.38918 * 119.57308 * 179.75336 * 4 3 2 6 6 C 1.46500 * 120.00270 * 4.72897 * 5 4 3 7 7 C 1.46502 * 119.99649 * 184.45197 * 5 4 3 8 8 N 1.32466 * 120.85248 * 359.47620 * 4 3 2 9 9 C 1.31791 * 121.74391 * 0.27809 * 8 4 3 10 10 C 1.39195 * 120.68707 * 359.97090 * 9 8 4 11 11 C 1.48378 * 120.45426 * 179.97438 * 10 9 8 12 12 C 1.39745 * 120.00077 * 129.99990 * 11 10 9 13 13 C 1.38390 * 120.37784 * 179.97438 * 12 11 10 14 14 C 1.37723 * 120.37856 * 359.97438 * 13 12 11 15 15 C 1.40756 * 119.99366 * 0.02562 * 14 13 12 16 16 C 1.41427 * 120.18442 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99796 * 150.20485 * 16 15 14 18 18 C 1.39927 * 120.00354 * 330.20369 * 16 15 14 19 19 N 1.30826 * 120.00472 * 161.72088 * 18 16 15 20 20 Si 1.86798 * 119.99523 * 341.71940 * 18 16 15 21 21 H 1.48505 * 109.47386 * 95.41551 * 20 18 16 22 22 H 1.48506 * 109.47218 * 215.41240 * 20 18 16 23 23 H 1.48499 * 109.47515 * 335.41167 * 20 18 16 24 24 C 1.38750 * 120.00340 * 309.72872 * 11 10 9 25 25 H 1.08997 * 109.46803 * 270.29496 * 1 2 3 26 26 H 1.08998 * 109.47179 * 30.30165 * 1 2 3 27 27 H 1.09002 * 109.46349 * 150.30084 * 1 2 3 28 28 H 1.08005 * 120.38749 * 359.97438 * 3 2 1 29 29 H 1.08992 * 109.47238 * 269.72487 * 6 5 4 30 30 H 1.08999 * 109.47242 * 29.72711 * 6 5 4 31 31 H 1.09007 * 109.47043 * 149.72171 * 6 5 4 32 32 H 1.08999 * 109.47165 * 270.27107 * 7 5 4 33 33 H 1.09000 * 109.47333 * 30.27759 * 7 5 4 34 34 H 1.09002 * 109.46887 * 150.27673 * 7 5 4 35 35 H 1.08003 * 119.65726 * 179.97438 * 9 8 4 36 36 H 1.07997 * 119.81226 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.81126 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.00502 * 180.02562 * 14 13 12 39 39 H 0.96995 * 120.00171 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.18334 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1863 0.0000 4 6 3.6056 1.1480 -0.0046 5 7 4.3241 2.3370 -0.0098 6 6 3.6213 3.6181 0.0941 7 6 5.7852 2.3093 -0.1132 8 7 4.2534 -0.0074 0.0015 9 6 3.6149 -1.1603 0.0066 10 6 2.2236 -1.2018 0.0063 11 6 1.5100 -2.5027 0.0115 12 6 0.4917 -2.7374 0.9393 13 6 -0.1793 -3.9477 0.9508 14 6 0.1485 -4.9344 0.0476 15 6 1.1717 -4.7149 -0.8938 16 6 1.5120 -5.7255 -1.8228 17 1 1.8988 -5.4574 -2.7948 18 6 1.3476 -7.0728 -1.4825 19 7 1.3118 -7.9847 -2.4199 20 14 1.1792 -7.5694 0.3104 21 1 -0.2597 -7.6814 0.6600 22 1 1.8443 -8.8796 0.5257 23 1 1.8192 -6.5421 1.1708 24 6 1.8500 -3.4842 -0.9084 25 1 -0.3633 0.0053 1.0276 26 1 -0.3633 0.8872 -0.5185 27 1 -0.3632 -0.8927 -0.5092 28 1 1.6936 2.1326 -0.0004 29 1 3.3753 3.9797 -0.9043 30 1 2.7044 3.4841 0.6681 31 1 4.2612 4.3440 0.5960 32 1 6.2192 2.2587 0.8854 33 1 6.0924 1.4353 -0.6876 34 1 6.1312 3.2133 -0.6143 35 1 4.1771 -2.0825 0.0110 36 1 0.2263 -1.9697 1.6509 37 1 -0.9646 -4.1195 1.6721 38 1 -0.3793 -5.8765 0.0617 39 1 1.1975 -8.9185 -2.1841 40 1 2.6332 -3.3043 -1.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241244238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:42 Heat of formation + Delta-G solvation = 42.253770 kcal Electronic energy + Delta-G solvation = -21104.441679 eV Core-core repulsion = 18075.915650 eV Total energy + Delta-G solvation = -3028.526029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41188 -39.51706 -37.51580 -35.62491 -34.74348 -32.89365 -32.08892 -30.06135 -29.38854 -28.11087 -27.04230 -25.90352 -23.92837 -22.75682 -22.27008 -21.29817 -19.17123 -17.94081 -17.70254 -17.64937 -16.48462 -16.33763 -16.21625 -15.58007 -15.40813 -15.17835 -14.82097 -14.53858 -14.38577 -13.80676 -13.70997 -13.64538 -13.57418 -13.39398 -13.22448 -13.02604 -12.78480 -12.71994 -12.60997 -12.38803 -12.01561 -11.61374 -11.50353 -11.08533 -10.75134 -10.39793 -10.31057 -9.49964 -9.34190 -8.87880 -8.28701 -6.49042 0.17791 0.39251 0.83665 1.03923 1.27420 1.42547 1.50766 2.05616 2.13978 2.60582 2.95033 3.52708 3.58055 3.87441 4.02924 4.06662 4.24529 4.38651 4.41932 4.46885 4.54286 4.55601 4.64008 4.74375 4.81060 4.83938 4.87079 4.93882 4.95717 4.98956 5.03580 5.07268 5.22609 5.32988 5.48780 5.65098 5.68071 5.86306 5.91582 6.03919 6.07508 6.27750 6.39969 6.43260 6.76759 6.85204 7.21430 8.21337 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003990 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.897980 B = 7015.622931 C = 7519.523392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.006 3.994 3 C -0.235 4.235 4 C 0.381 3.619 5 N -0.625 5.625 6 C 0.091 3.909 7 C 0.101 3.899 8 N -0.564 5.564 9 C 0.147 3.853 10 C -0.161 4.161 11 C 0.000 4.000 12 C -0.204 4.204 13 C -0.081 4.081 14 C -0.249 4.249 15 C 0.075 3.925 16 C -0.490 4.490 17 H 0.051 0.949 18 C 0.048 3.952 19 N -0.855 5.855 20 Si 0.966 3.034 21 H -0.255 1.255 22 H -0.279 1.279 23 H -0.253 1.253 24 C -0.207 4.207 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.161 0.839 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.293 0.707 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 20.811 8.248 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.002 4.002 3 C -0.260 4.260 4 C 0.146 3.854 5 N -0.340 5.340 6 C -0.051 4.051 7 C -0.041 4.041 8 N -0.282 5.282 9 C -0.009 4.009 10 C -0.166 4.166 11 C -0.001 4.001 12 C -0.223 4.223 13 C -0.099 4.099 14 C -0.269 4.269 15 C 0.073 3.927 16 C -0.520 4.520 17 H 0.069 0.931 18 C -0.166 4.166 19 N -0.481 5.481 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.177 1.177 24 C -0.226 4.226 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.179 0.821 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.135 20.776 8.091 22.398 hybrid contribution -0.525 -1.112 -0.117 1.236 sum 1.610 19.663 7.974 21.280 Atomic orbital electron populations 1.20925 0.88709 1.03504 1.03744 1.20369 0.97595 0.90914 0.91299 1.21420 0.92272 0.99527 1.12741 1.18708 0.88858 0.86628 0.91181 1.46446 1.06569 1.02739 1.78208 1.21910 0.98210 0.82621 1.02334 1.21560 0.78486 1.02851 1.01241 1.67101 1.40961 0.97723 1.22457 1.22503 0.91157 0.94702 0.92576 1.19581 0.94128 0.93256 1.09647 1.18385 0.95335 0.91222 0.95177 1.20842 1.00634 0.98228 1.02603 1.20931 0.98696 0.93130 0.97134 1.21190 1.02179 1.00377 1.03120 1.17754 0.90609 0.92920 0.91405 1.19444 1.40371 0.91123 1.01025 0.93091 1.26799 0.90342 0.95939 1.03514 1.69731 1.37645 1.03684 1.37084 0.85480 0.79790 0.77472 0.78303 1.18055 1.20609 1.17719 1.21159 1.03138 0.95533 1.02817 0.88963 0.89308 0.92035 0.82137 0.92076 0.90501 0.89046 0.93478 0.92705 0.89238 0.83468 0.85447 0.85089 0.88584 0.89704 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 8.52 71.24 0.61 -2.08 16 2 C 0.01 0.17 5.90 -19.49 -0.11 0.06 16 3 C -0.24 -6.00 8.88 22.47 0.20 -5.80 16 4 C 0.38 10.83 7.37 133.09 0.98 11.81 16 5 N -0.63 -13.39 3.39 -753.94 -2.55 -15.94 16 6 C 0.09 1.13 10.06 127.77 1.29 2.41 16 7 C 0.10 1.90 10.41 127.77 1.33 3.23 16 8 N -0.56 -19.02 9.14 -192.43 -1.76 -20.78 16 9 C 0.15 5.31 10.67 84.93 0.91 6.21 16 10 C -0.16 -5.78 5.48 -19.94 -0.11 -5.89 16 11 C 0.00 -0.01 4.78 -20.09 -0.10 -0.11 16 12 C -0.20 -7.65 7.99 22.67 0.18 -7.47 16 13 C -0.08 -3.21 10.01 22.18 0.22 -2.99 16 14 C -0.25 -11.81 7.17 22.76 0.16 -11.64 16 15 C 0.08 3.94 5.10 -21.32 -0.11 3.83 16 16 C -0.49 -28.42 9.57 23.46 0.22 -28.20 16 17 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 18 C 0.05 2.64 5.40 85.25 0.46 3.10 16 19 N -0.85 -48.26 13.93 21.82 0.30 -47.95 16 20 Si 0.97 43.81 24.52 68.60 1.68 45.49 16 21 H -0.26 -10.81 6.71 99.48 0.67 -10.14 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.25 -11.74 6.86 99.48 0.68 -11.06 16 24 C -0.21 -9.93 9.26 22.95 0.21 -9.72 16 25 H 0.09 1.88 7.58 -2.39 -0.02 1.86 16 26 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 27 H 0.06 1.78 6.58 -2.39 -0.02 1.76 16 28 H 0.16 2.91 6.23 -2.91 -0.02 2.89 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.85 6.34 -2.39 -0.02 0.83 16 31 H 0.09 0.73 8.07 -2.38 -0.02 0.71 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 34 H 0.09 1.11 8.07 -2.39 -0.02 1.10 16 35 H 0.15 5.34 8.04 -2.91 -0.02 5.31 16 36 H 0.13 3.97 6.93 -2.91 -0.02 3.95 16 37 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.10 4.55 4.72 -2.91 -0.01 4.53 16 39 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 40 H 0.09 4.40 8.05 -2.91 -0.02 4.38 16 Total: -1.00 -66.75 325.08 5.00 -61.75 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.98 Total: 20.68 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 6.34 Total: -43.24 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -4.01 Total: -84.68 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.68 Total: 45.49 kcal Total: -66.75 5.00 -61.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241244238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.005 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds