Wall clock time and date at job start Tue Mar 31 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36229 * 119.93960 * 2 1 4 4 C 1.40935 * 119.88026 * 179.97438 * 3 2 1 5 5 C 1.40993 * 120.11175 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99662 * 24.70475 * 5 4 3 7 7 C 1.39967 * 120.00483 * 204.70146 * 5 4 3 8 8 N 1.30829 * 119.99418 * 17.97402 * 7 5 4 9 9 Si 1.86792 * 120.00393 * 197.97835 * 7 5 4 10 10 H 1.48506 * 109.47304 * 89.99818 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99944 * 9 7 5 12 12 H 1.48498 * 109.47068 * 330.00015 * 9 7 5 13 13 C 1.40972 * 119.77955 * 359.97438 * 4 3 2 14 14 C 1.36189 * 119.88000 * 359.72764 * 13 4 3 15 15 C 1.39982 * 119.94305 * 179.97438 * 2 1 3 16 16 C 1.47865 * 119.88740 * 0.02562 * 15 2 1 17 17 C 1.40261 * 120.47475 * 130.02355 * 16 15 2 18 18 C 1.36936 * 118.49892 * 179.70560 * 17 16 15 19 19 C 1.39357 * 119.37707 * 0.55757 * 18 17 16 20 20 N 1.38729 * 119.53825 * 179.70414 * 19 18 17 21 21 C 1.46497 * 120.00198 * 4.72743 * 20 19 18 22 22 C 1.46501 * 119.99840 * 184.73090 * 20 19 18 23 23 N 1.32541 * 120.91802 * 359.43008 * 19 18 17 24 24 C 1.31750 * 121.64049 * 0.27016 * 23 19 18 25 25 H 1.08998 * 109.47023 * 270.01758 * 1 2 3 26 26 H 1.08999 * 109.47161 * 30.02196 * 1 2 3 27 27 H 1.09006 * 109.47004 * 150.02005 * 1 2 3 28 28 H 1.07997 * 120.06293 * 359.95856 * 3 2 1 29 29 H 0.97006 * 119.99471 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.05791 * 180.02562 * 13 4 3 31 31 H 1.07999 * 119.94448 * 180.29257 * 14 13 4 32 32 H 1.08000 * 120.75333 * 359.97438 * 17 16 15 33 33 H 1.07992 * 120.31088 * 180.26419 * 18 17 16 34 34 H 1.09000 * 109.47318 * 270.00499 * 21 20 19 35 35 H 1.08996 * 109.47403 * 149.99830 * 21 20 19 36 36 H 1.09002 * 109.46763 * 29.99929 * 21 20 19 37 37 H 1.09003 * 109.47263 * 269.99815 * 22 20 19 38 38 H 1.08998 * 109.47368 * 29.99855 * 22 20 19 39 39 H 1.09006 * 109.46875 * 149.99855 * 22 20 19 40 40 H 1.07994 * 119.74740 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5963 1.1790 0.0005 5 6 4.3049 2.3980 0.0000 6 1 3.8415 3.2921 0.3901 7 6 5.6088 2.4493 -0.5060 8 7 6.0463 1.4934 -1.2848 9 14 6.7245 3.8824 -0.0695 10 1 7.4825 3.5611 1.1665 11 1 7.6752 4.1270 -1.1837 12 1 5.9027 5.0986 0.1560 13 6 4.2951 -0.0452 0.0016 14 6 3.6060 -1.2199 0.0078 15 6 2.2057 -1.2130 0.0005 16 6 1.4626 -2.4913 0.0005 17 6 1.7776 -3.4972 -0.9248 18 6 1.0676 -4.6675 -0.8847 19 6 0.0533 -4.8197 0.0586 20 7 -0.6722 -6.0015 0.0982 21 6 -0.3032 -7.1172 -0.7766 22 6 -1.8074 -6.1338 1.0148 23 7 -0.2244 -3.8532 0.9221 24 6 0.4382 -2.7145 0.9214 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6470 2.1158 -0.0007 29 1 6.9499 1.5291 -1.6358 30 1 5.3751 -0.0516 0.0025 31 1 4.1404 -2.1584 0.0134 32 1 2.5652 -3.3538 -1.6498 33 1 1.2886 -5.4631 -1.5807 34 1 -0.8410 -7.0319 -1.7208 35 1 -0.5638 -8.0591 -0.2938 36 1 0.7699 -7.0907 -0.9660 37 1 -1.4596 -6.5286 1.9694 38 1 -2.2644 -5.1566 1.1706 39 1 -2.5429 -6.8147 0.5862 40 1 0.1867 -1.9477 1.6392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241370616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:54 Heat of formation + Delta-G solvation = 56.306019 kcal Electronic energy + Delta-G solvation = -20954.291861 eV Core-core repulsion = 17926.375184 eV Total energy + Delta-G solvation = -3027.916678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94217 -37.87692 -36.19624 -34.07694 -32.26211 -31.47699 -30.71773 -28.77860 -28.18226 -25.87018 -25.84597 -24.02200 -22.60908 -21.43613 -20.21671 -19.81164 -17.24797 -16.93828 -16.18731 -15.60940 -15.19542 -15.14396 -14.38783 -14.05176 -13.85761 -13.71775 -13.03997 -12.90877 -12.74636 -12.61564 -12.46479 -12.23785 -12.12810 -11.92948 -11.91015 -11.51281 -11.41329 -11.08557 -10.94836 -10.53009 -10.37301 -9.86648 -9.59706 -9.39722 -9.32249 -9.09965 -8.96225 -7.62945 -7.37095 -6.88960 -6.80332 -4.37620 1.69596 1.86109 2.75997 3.03339 3.06746 3.07624 3.10757 3.18478 3.87225 4.34961 4.59497 4.81079 5.05170 5.20598 5.26901 5.44940 5.48929 5.57412 5.62387 5.64969 5.69717 5.79621 5.93835 6.01658 6.09915 6.19240 6.37321 6.38304 6.46467 6.61115 6.81325 6.94666 7.01207 7.03029 7.13358 7.27063 7.34514 7.60748 7.62051 7.90111 8.02020 8.11599 8.23853 8.55477 8.58745 8.82027 8.93453 10.08847 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039354 B = 0.003439 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.325095 B = 8139.864064 C = 8621.430783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.041 4.041 3 C -0.225 4.225 4 C 0.118 3.882 5 C -0.455 4.455 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.785 5.785 9 Si 0.909 3.091 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.261 1.261 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.188 4.188 16 C -0.086 4.086 17 C -0.045 4.045 18 C -0.232 4.232 19 C 0.370 3.630 20 N -0.627 5.627 21 C 0.101 3.899 22 C 0.107 3.893 23 N -0.539 5.539 24 C 0.133 3.867 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.282 0.718 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -11.253 0.603 13.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.041 4.041 3 C -0.245 4.245 4 C 0.115 3.885 5 C -0.483 4.483 6 H 0.098 0.902 7 C -0.144 4.144 8 N -0.409 5.409 9 Si 0.734 3.266 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.185 1.185 13 C -0.190 4.190 14 C -0.096 4.096 15 C -0.190 4.190 16 C -0.091 4.091 17 C -0.071 4.071 18 C -0.256 4.256 19 C 0.137 3.863 20 N -0.344 5.344 21 C -0.043 4.043 22 C -0.036 4.036 23 N -0.256 5.256 24 C -0.024 4.024 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.105 0.895 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.444 -11.600 1.058 14.387 hybrid contribution 1.338 0.688 -0.581 1.612 sum -7.107 -10.913 0.476 13.032 Atomic orbital electron populations 1.20798 0.93897 1.01082 1.00629 1.19079 0.93421 0.92781 0.98816 1.20514 0.94189 0.95351 1.14426 1.17661 0.90895 0.93188 0.86707 1.19617 0.97594 0.96135 1.35002 0.90246 1.25968 0.98508 0.97336 0.92573 1.69839 1.17798 1.31822 1.21478 0.86290 0.79738 0.81513 0.79100 1.19170 1.20256 1.18523 1.20961 0.99669 0.91415 1.06996 1.20429 0.92480 0.96870 0.99846 1.17725 0.92263 0.89387 1.19585 1.19658 0.97704 0.95345 0.96344 1.21269 0.97411 0.91852 0.96553 1.21031 1.01104 1.00241 1.03213 1.18241 0.90035 0.86746 0.91271 1.45920 1.32977 1.11856 1.43611 1.21578 1.00981 0.88216 0.93479 1.21418 0.87583 1.02451 0.92194 1.67071 1.31335 1.02194 1.24983 1.22665 0.91515 0.92152 0.96068 0.92548 0.92908 0.92788 0.88898 0.90707 0.86521 0.89494 0.85419 0.85960 0.93519 0.91637 0.91339 0.94033 0.90717 0.92577 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 8.44 36.01 0.30 -1.64 16 2 C -0.04 -0.90 5.84 -104.69 -0.61 -1.51 16 3 C -0.23 -5.43 9.36 -39.28 -0.37 -5.79 16 4 C 0.12 3.08 5.57 -106.80 -0.60 2.49 16 5 C -0.45 -11.78 9.03 -37.89 -0.34 -12.12 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 7 C 0.08 1.84 5.13 -17.33 -0.09 1.75 16 8 N -0.78 -19.79 10.96 55.55 0.61 -19.18 16 9 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 13 C -0.17 -4.36 8.63 -39.28 -0.34 -4.70 16 14 C -0.08 -1.80 9.46 -39.65 -0.38 -2.18 16 15 C -0.19 -4.11 5.52 -104.63 -0.58 -4.69 16 16 C -0.09 -1.66 4.72 -104.71 -0.49 -2.15 16 17 C -0.05 -0.79 9.62 -39.29 -0.38 -1.16 16 18 C -0.23 -3.59 9.12 -39.64 -0.36 -3.95 16 19 C 0.37 5.94 7.36 -155.08 -1.14 4.79 16 20 N -0.63 -8.09 3.38 -189.64 -0.64 -8.73 16 21 C 0.10 0.93 10.05 59.85 0.60 1.53 16 22 C 0.11 1.17 10.41 59.85 0.62 1.80 16 23 N -0.54 -9.44 9.14 -12.09 -0.11 -9.55 16 24 C 0.13 2.40 9.07 -17.10 -0.16 2.24 16 25 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 26 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.05 0.96 6.44 -51.93 -0.33 0.63 16 28 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 31 H 0.09 1.85 8.05 -52.49 -0.42 1.43 16 32 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.12 1.55 6.23 -52.49 -0.33 1.22 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.07 0.61 6.35 -51.93 -0.33 0.28 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.92 7.44 -51.93 -0.39 0.53 16 39 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 40 H 0.15 2.60 6.84 -52.49 -0.36 2.24 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -28.18 329.54 -9.88 -38.05 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.37 Total: 6.56 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -4.30 Total: -25.30 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.14 Total: -37.46 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.18 -9.88 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241370616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.360 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds