Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36229 * 119.93960 * 2 1 4 4 C 1.40935 * 119.88026 * 179.97438 * 3 2 1 5 5 C 1.40993 * 120.11175 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99662 * 24.70475 * 5 4 3 7 7 C 1.39967 * 120.00483 * 204.70146 * 5 4 3 8 8 N 1.30829 * 119.99418 * 17.97402 * 7 5 4 9 9 Si 1.86792 * 120.00393 * 197.97835 * 7 5 4 10 10 H 1.48506 * 109.47304 * 89.99818 * 9 7 5 11 11 H 1.48501 * 109.47319 * 209.99944 * 9 7 5 12 12 H 1.48498 * 109.47068 * 330.00015 * 9 7 5 13 13 C 1.40972 * 119.77955 * 359.97438 * 4 3 2 14 14 C 1.36189 * 119.88000 * 359.72764 * 13 4 3 15 15 C 1.39982 * 119.94305 * 179.97438 * 2 1 3 16 16 C 1.47865 * 119.88740 * 0.02562 * 15 2 1 17 17 C 1.40261 * 120.47475 * 130.02355 * 16 15 2 18 18 C 1.36936 * 118.49892 * 179.70560 * 17 16 15 19 19 C 1.39357 * 119.37707 * 0.55757 * 18 17 16 20 20 N 1.38729 * 119.53825 * 179.70414 * 19 18 17 21 21 C 1.46497 * 120.00198 * 4.72743 * 20 19 18 22 22 C 1.46501 * 119.99840 * 184.73090 * 20 19 18 23 23 N 1.32541 * 120.91802 * 359.43008 * 19 18 17 24 24 C 1.31750 * 121.64049 * 0.27016 * 23 19 18 25 25 H 1.08998 * 109.47023 * 270.01758 * 1 2 3 26 26 H 1.08999 * 109.47161 * 30.02196 * 1 2 3 27 27 H 1.09006 * 109.47004 * 150.02005 * 1 2 3 28 28 H 1.07997 * 120.06293 * 359.95856 * 3 2 1 29 29 H 0.97006 * 119.99471 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.05791 * 180.02562 * 13 4 3 31 31 H 1.07999 * 119.94448 * 180.29257 * 14 13 4 32 32 H 1.08000 * 120.75333 * 359.97438 * 17 16 15 33 33 H 1.07992 * 120.31088 * 180.26419 * 18 17 16 34 34 H 1.09000 * 109.47318 * 270.00499 * 21 20 19 35 35 H 1.08996 * 109.47403 * 149.99830 * 21 20 19 36 36 H 1.09002 * 109.46763 * 29.99929 * 21 20 19 37 37 H 1.09003 * 109.47263 * 269.99815 * 22 20 19 38 38 H 1.08998 * 109.47368 * 29.99855 * 22 20 19 39 39 H 1.09006 * 109.46875 * 149.99855 * 22 20 19 40 40 H 1.07994 * 119.74740 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5963 1.1790 0.0005 5 6 4.3049 2.3980 0.0000 6 1 3.8415 3.2921 0.3901 7 6 5.6088 2.4493 -0.5060 8 7 6.0463 1.4934 -1.2848 9 14 6.7245 3.8824 -0.0695 10 1 7.4825 3.5611 1.1665 11 1 7.6752 4.1270 -1.1837 12 1 5.9027 5.0986 0.1560 13 6 4.2951 -0.0452 0.0016 14 6 3.6060 -1.2199 0.0078 15 6 2.2057 -1.2130 0.0005 16 6 1.4626 -2.4913 0.0005 17 6 1.7776 -3.4972 -0.9248 18 6 1.0676 -4.6675 -0.8847 19 6 0.0533 -4.8197 0.0586 20 7 -0.6722 -6.0015 0.0982 21 6 -0.3032 -7.1172 -0.7766 22 6 -1.8074 -6.1338 1.0148 23 7 -0.2244 -3.8532 0.9221 24 6 0.4382 -2.7145 0.9214 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6470 2.1158 -0.0007 29 1 6.9499 1.5291 -1.6358 30 1 5.3751 -0.0516 0.0025 31 1 4.1404 -2.1584 0.0134 32 1 2.5652 -3.3538 -1.6498 33 1 1.2886 -5.4631 -1.5807 34 1 -0.8410 -7.0319 -1.7208 35 1 -0.5638 -8.0591 -0.2938 36 1 0.7699 -7.0907 -0.9660 37 1 -1.4596 -6.5286 1.9694 38 1 -2.2644 -5.1566 1.1706 39 1 -2.5429 -6.8147 0.5862 40 1 0.1867 -1.9477 1.6392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241370616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = 43.599285 kcal Electronic energy + Delta-G solvation = -20954.842867 eV Core-core repulsion = 17926.375184 eV Total energy + Delta-G solvation = -3028.467683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26372 -39.55487 -37.37792 -35.81192 -33.64604 -33.17812 -32.26318 -30.33896 -29.02497 -27.55669 -27.32124 -25.40572 -23.92084 -22.88790 -21.90902 -21.45408 -18.82563 -18.35460 -17.48527 -17.21888 -16.76706 -16.18797 -15.67433 -15.50775 -15.41868 -15.05800 -14.54572 -14.37055 -14.06448 -13.95863 -13.75367 -13.68013 -13.36662 -13.20197 -13.06867 -12.95139 -12.78571 -12.66498 -12.59638 -12.15657 -12.07556 -11.51255 -11.28555 -11.11172 -10.70454 -10.56517 -10.31144 -9.35787 -9.09846 -8.66293 -8.21159 -6.28992 0.31122 0.50753 1.07983 1.20667 1.38483 1.51557 1.55052 2.12032 2.20225 2.69414 3.08345 3.66487 3.72946 4.03737 4.22725 4.25744 4.32458 4.38897 4.43479 4.50691 4.57250 4.60086 4.70072 4.83657 4.84869 4.92042 4.97620 5.01616 5.04249 5.11343 5.14074 5.20326 5.34192 5.50275 5.55706 5.69055 5.77644 6.06576 6.13795 6.15755 6.28283 6.39532 6.47449 6.70264 6.93093 7.05617 7.27770 8.30545 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.039354 B = 0.003439 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.325095 B = 8139.864064 C = 8621.430783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.048 4.048 3 C -0.241 4.241 4 C 0.086 3.914 5 C -0.494 4.494 6 H 0.076 0.924 7 C 0.035 3.965 8 N -0.819 5.819 9 Si 0.983 3.017 10 H -0.262 1.262 11 H -0.267 1.267 12 H -0.258 1.258 13 C -0.194 4.194 14 C -0.085 4.085 15 C -0.174 4.174 16 C -0.118 4.118 17 C -0.047 4.047 18 C -0.228 4.228 19 C 0.370 3.630 20 N -0.626 5.626 21 C 0.092 3.908 22 C 0.103 3.897 23 N -0.554 5.554 24 C 0.138 3.862 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.289 0.711 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -13.361 0.457 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.048 4.048 3 C -0.261 4.261 4 C 0.084 3.916 5 C -0.523 4.523 6 H 0.094 0.906 7 C -0.181 4.181 8 N -0.445 5.445 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.192 1.192 12 H -0.182 1.182 13 C -0.213 4.213 14 C -0.104 4.104 15 C -0.176 4.176 16 C -0.123 4.123 17 C -0.072 4.072 18 C -0.252 4.252 19 C 0.135 3.865 20 N -0.341 5.341 21 C -0.050 4.050 22 C -0.040 4.040 23 N -0.271 5.271 24 C -0.018 4.018 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.909 -13.759 0.906 16.980 hybrid contribution 1.561 1.008 -0.543 1.936 sum -8.348 -12.751 0.362 15.245 Atomic orbital electron populations 1.20760 0.90897 1.01739 1.02088 1.19508 0.95709 0.92082 0.97519 1.20702 0.93769 0.96506 1.15108 1.17991 0.92076 0.93661 0.87867 1.19826 0.99230 0.96175 1.37091 0.90560 1.26793 0.99335 1.00123 0.91799 1.69890 1.18507 1.33733 1.22337 0.85194 0.77579 0.77921 0.78974 1.18719 1.19162 1.18157 1.20904 0.99032 0.92345 1.09040 1.20634 0.93497 0.96637 0.99599 1.18032 0.91903 0.90947 1.16720 1.19492 0.99215 0.94899 0.98699 1.21362 0.97566 0.92127 0.96182 1.21270 1.00279 1.00202 1.03447 1.18651 0.89962 0.87369 0.90512 1.46331 1.32580 1.11443 1.43752 1.21870 1.01494 0.87892 0.93753 1.21550 0.87592 1.02386 0.92463 1.67145 1.31688 1.02395 1.25892 1.22636 0.90889 0.92625 0.95675 0.90580 0.91925 0.92343 0.88516 0.90034 0.88249 0.88161 0.85216 0.82855 0.92146 0.89077 0.90992 0.93676 0.92345 0.89391 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 8.44 71.24 0.60 -2.84 16 2 C -0.05 -2.13 5.84 -19.91 -0.12 -2.24 16 3 C -0.24 -12.02 9.36 22.46 0.21 -11.81 16 4 C 0.09 4.74 5.57 -21.27 -0.12 4.62 16 5 C -0.49 -26.89 9.03 23.36 0.21 -26.68 16 6 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 7 C 0.04 1.78 5.13 85.26 0.44 2.21 16 8 N -0.82 -43.02 10.96 21.83 0.24 -42.78 16 9 Si 0.98 38.26 29.60 68.60 2.03 40.29 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 11 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 13 C -0.19 -10.39 8.63 22.46 0.19 -10.20 16 14 C -0.09 -4.07 9.46 22.23 0.21 -3.86 16 15 C -0.17 -7.70 5.52 -19.87 -0.11 -7.80 16 16 C -0.12 -4.45 4.72 -19.92 -0.09 -4.55 16 17 C -0.05 -1.56 9.62 22.46 0.22 -1.35 16 18 C -0.23 -6.42 9.12 22.23 0.20 -6.21 16 19 C 0.37 10.85 7.36 133.17 0.98 11.83 16 20 N -0.63 -13.88 3.38 -753.90 -2.55 -16.43 16 21 C 0.09 1.28 10.05 127.77 1.28 2.57 16 22 C 0.10 1.92 10.41 127.77 1.33 3.25 16 23 N -0.55 -18.31 9.14 -192.16 -1.76 -20.06 16 24 C 0.14 4.83 9.07 85.02 0.77 5.60 16 25 H 0.08 2.37 7.49 -2.39 -0.02 2.35 16 26 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 27 H 0.06 2.00 6.44 -2.38 -0.02 1.98 16 28 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.29 13.66 8.30 -92.70 -0.77 12.89 16 30 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 31 H 0.10 4.38 8.05 -2.91 -0.02 4.35 16 32 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.15 3.29 6.23 -2.91 -0.02 3.27 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 36 H 0.07 0.98 6.35 -2.39 -0.02 0.96 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 39 H 0.09 1.09 8.07 -2.38 -0.02 1.07 16 40 H 0.15 5.14 6.84 -2.91 -0.02 5.12 16 Total: -1.00 -63.20 329.54 5.21 -57.98 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.04 Total: 28.48 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 6.21 Total: -47.48 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -4.07 Total: -79.27 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -63.20 5.21 -57.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241370616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.582 kcal (2) G-P(sol) polarization free energy of solvation -63.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds