Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47353 * 2 1 4 4 O 1.42898 * 109.47676 * 179.97438 * 3 2 1 5 5 C 1.35905 * 117.00760 * 179.97438 * 4 3 2 6 6 C 1.38901 * 119.97730 * 0.02562 * 5 4 3 7 7 C 1.38271 * 120.23221 * 180.02562 * 6 5 4 8 8 C 1.37991 * 120.20763 * 0.02562 * 7 6 5 9 9 C 1.39612 * 119.95832 * 0.26016 * 8 7 6 10 10 C 1.47990 * 120.11558 * 179.69921 * 9 8 7 11 11 C 1.39929 * 119.88366 * 179.71813 * 10 9 8 12 12 C 1.36257 * 120.12478 * 179.76023 * 11 10 9 13 13 C 1.40924 * 119.87546 * 0.49703 * 12 11 10 14 14 C 1.41030 * 120.12087 * 179.74074 * 13 12 11 15 15 H 1.07998 * 120.00403 * 155.05107 * 14 13 12 16 16 C 1.40010 * 119.99621 * 335.04708 * 14 13 12 17 17 N 1.30792 * 120.00155 * 342.14531 * 16 14 13 18 18 Si 1.86802 * 119.99889 * 162.14260 * 16 14 13 19 19 H 1.48495 * 109.47240 * 94.65337 * 18 16 14 20 20 H 1.48502 * 109.46894 * 214.65839 * 18 16 14 21 21 H 1.48501 * 109.46964 * 334.65551 * 18 16 14 22 22 C 1.40933 * 119.76584 * 359.76204 * 13 12 11 23 23 C 1.36254 * 119.87452 * 359.97438 * 22 13 12 24 24 C 1.38410 * 119.98515 * 180.02562 * 5 4 3 25 25 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47279 * 299.99757 * 1 2 3 27 27 H 1.08999 * 109.47119 * 60.00180 * 1 2 3 28 28 H 1.09003 * 109.47012 * 239.99767 * 2 1 3 29 29 H 1.08999 * 109.47119 * 119.99820 * 2 1 3 30 30 H 1.09003 * 109.47252 * 59.99914 * 3 2 1 31 31 H 1.09004 * 109.47325 * 299.99863 * 3 2 1 32 32 H 1.08000 * 119.88839 * 0.04181 * 6 5 4 33 33 H 1.08005 * 119.89619 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.02513 * 179.97438 * 8 7 6 35 35 H 1.08007 * 119.93677 * 0.02855 * 11 10 9 36 36 H 1.07998 * 120.06145 * 180.25986 * 12 11 10 37 37 H 0.97003 * 120.00377 * 180.02562 * 17 16 14 38 38 H 1.07997 * 120.06447 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.94044 * 180.02562 * 23 22 13 40 40 H 1.08000 * 120.10402 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0861 2.6534 0.0001 6 6 3.3292 3.8181 -0.0003 7 6 3.9515 5.0528 -0.0013 8 6 5.3289 5.1360 -0.0024 9 6 6.0978 3.9707 -0.0080 10 6 7.5752 4.0559 -0.0159 11 6 8.3411 2.8849 -0.0154 12 6 9.7017 2.9576 -0.0276 13 6 10.3375 4.2153 -0.0300 14 6 11.7454 4.2966 -0.0371 15 1 12.2337 5.1745 -0.4335 16 6 12.5102 3.2391 0.4699 17 7 11.9577 2.3493 1.2534 18 14 14.3196 3.0988 0.0274 19 1 15.1393 3.7412 1.0859 20 1 14.6918 1.6657 -0.0857 21 1 14.5659 3.7781 -1.2700 22 6 9.5613 5.3916 -0.0249 23 6 8.2014 5.3074 -0.0182 24 6 5.4683 2.7254 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.2508 3.7591 0.0003 33 1 3.3577 5.9549 -0.0021 34 1 5.8119 6.1019 -0.0036 35 1 7.8529 1.9215 -0.0098 36 1 10.2918 2.0531 -0.0315 37 1 12.4876 1.6168 1.6050 38 1 10.0435 6.3580 -0.0263 39 1 7.6056 6.2082 -0.0147 40 1 6.0579 1.8205 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241589848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = -15.200295 kcal Electronic energy + Delta-G solvation = -20350.167583 eV Core-core repulsion = 17286.857407 eV Total energy + Delta-G solvation = -3063.310175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.78461 -38.08036 -36.72131 -34.13211 -33.81186 -31.43173 -30.12789 -29.33408 -28.45603 -26.59108 -25.20244 -22.66415 -22.29520 -21.40221 -20.30364 -19.86093 -17.60869 -17.51342 -16.25487 -15.96196 -15.43986 -15.31450 -14.62437 -14.17458 -14.02965 -13.81759 -13.26275 -13.03355 -12.78035 -12.57535 -12.45885 -12.24143 -12.10721 -11.89224 -11.60264 -11.36736 -11.23018 -11.18090 -11.00233 -10.74573 -10.71973 -10.49304 -10.34385 -9.77326 -9.43674 -9.31401 -8.64133 -7.85579 -7.63851 -7.09785 -6.91864 -4.46021 1.57180 1.94999 2.76162 2.98132 3.02825 3.07451 3.17761 3.34961 3.79287 4.24545 4.66789 4.71851 4.73152 5.03606 5.15834 5.22988 5.25359 5.35564 5.45899 5.63563 5.67045 5.70280 5.83409 5.85776 5.88499 6.00288 6.07349 6.21420 6.33432 6.54726 6.74956 6.79368 6.86714 6.93962 6.99932 7.15688 7.23120 7.36234 7.51084 7.77208 7.85343 7.92133 8.07415 8.13755 8.47829 8.69982 8.82834 9.96628 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028109 B = 0.003110 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.882422 B = 9001.431089 C = 9903.210508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.320 6.320 5 C 0.135 3.865 6 C -0.250 4.250 7 C -0.074 4.074 8 C -0.181 4.181 9 C 0.062 3.938 10 C -0.210 4.210 11 C -0.071 4.071 12 C -0.174 4.174 13 C 0.120 3.880 14 C -0.445 4.445 15 H 0.083 0.917 16 C 0.073 3.927 17 N -0.776 5.776 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.232 4.232 23 C -0.058 4.058 24 C -0.178 4.178 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.285 0.715 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 -1.931 -1.590 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.014 4.014 4 O -0.235 6.235 5 C 0.091 3.909 6 C -0.269 4.269 7 C -0.092 4.092 8 C -0.199 4.199 9 C 0.061 3.939 10 C -0.211 4.211 11 C -0.089 4.089 12 C -0.193 4.193 13 C 0.117 3.883 14 C -0.473 4.473 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.399 5.399 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.251 4.251 23 C -0.077 4.077 24 C -0.197 4.197 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.054 -2.345 -1.437 14.321 hybrid contribution 0.576 0.059 -0.018 0.579 sum -13.478 -2.286 -1.455 13.748 Atomic orbital electron populations 1.21685 0.94510 1.02306 1.02103 1.21485 0.95789 0.95268 1.03682 1.22754 0.79373 0.98199 1.01111 1.86025 1.20539 1.27776 1.89118 1.18832 0.92081 0.83508 0.96514 1.20940 0.98900 0.92540 1.14551 1.20699 0.94522 0.96317 0.97682 1.21106 0.93172 0.98254 1.07406 1.18773 0.93229 0.91211 0.90640 1.18025 0.89189 0.93753 1.20114 1.20563 0.94265 0.95696 0.98404 1.20997 0.92854 0.98291 1.07170 1.17752 0.93191 0.91152 0.86167 1.19731 0.91483 1.02309 1.33738 0.89926 1.26051 1.01716 0.94375 0.92580 1.69816 1.38840 1.10728 1.20534 0.86239 0.81252 0.78677 0.80331 1.19329 1.19790 1.18180 1.20691 0.93101 0.97305 1.14037 1.20405 0.94446 0.95106 0.97706 1.20440 0.90686 0.98497 1.10052 0.91884 0.92443 0.92457 0.90892 0.90878 0.92397 0.92397 0.86742 0.86788 0.86227 0.88840 0.86362 0.90379 0.88665 0.88812 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -1.16 6.30 -26.74 -0.17 -1.33 16 3 C 0.06 0.70 4.74 37.15 0.18 0.88 16 4 O -0.32 -5.08 10.13 -19.44 -0.20 -5.28 16 5 C 0.14 2.35 6.68 -39.27 -0.26 2.09 16 6 C -0.25 -3.89 9.04 -39.32 -0.36 -4.25 16 7 C -0.07 -1.16 10.03 -39.66 -0.40 -1.55 16 8 C -0.18 -3.25 9.43 -39.16 -0.37 -3.62 16 9 C 0.06 1.25 5.88 -104.90 -0.62 0.64 16 10 C -0.21 -4.77 5.90 -104.63 -0.62 -5.38 16 11 C -0.07 -1.68 9.36 -39.66 -0.37 -2.05 16 12 C -0.17 -4.45 8.63 -39.28 -0.34 -4.79 16 13 C 0.12 3.13 5.57 -106.80 -0.59 2.53 16 14 C -0.44 -11.32 9.03 -37.86 -0.34 -11.66 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 16 C 0.07 1.76 5.13 -17.33 -0.09 1.67 16 17 N -0.78 -19.28 10.97 55.55 0.61 -18.67 16 18 Si 0.91 17.76 29.60 -169.99 -5.03 12.72 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.23 -5.58 9.73 -39.28 -0.38 -5.96 16 23 C -0.06 -1.31 9.36 -39.66 -0.37 -1.68 16 24 C -0.18 -3.46 9.36 -39.03 -0.37 -3.83 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.11 1.46 6.28 -52.49 -0.33 1.13 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.12 2.00 6.18 -52.49 -0.32 1.67 16 35 H 0.09 2.03 6.18 -52.48 -0.32 1.71 16 36 H 0.12 3.09 6.18 -52.49 -0.32 2.76 16 37 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.09 1.83 6.17 -52.49 -0.32 1.51 16 40 H 0.13 2.45 6.18 -52.49 -0.32 2.12 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -27.28 331.60 -9.97 -37.25 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.25 Total: 7.92 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: -5.10 Total: -38.95 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.61 Total: -18.67 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.28 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.28 -9.97 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241589848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.053 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds