Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47289 * 2 1 4 4 O 1.42894 * 109.47317 * 179.97438 * 3 2 1 5 5 C 1.35817 * 116.99738 * 179.97438 * 4 3 2 6 6 C 1.38965 * 119.90338 * 180.02562 * 5 4 3 7 7 C 1.37761 * 120.09247 * 179.97438 * 6 5 4 8 8 C 1.39748 * 119.90549 * 359.97438 * 7 6 5 9 9 C 1.47766 * 120.09230 * 179.97438 * 8 7 6 10 10 C 1.39235 * 120.34409 * 310.02263 * 9 8 7 11 11 C 1.38030 * 119.97816 * 179.97438 * 10 9 8 12 12 C 1.38961 * 120.68416 * 0.02562 * 11 10 9 13 13 C 1.36409 * 120.69995 * 359.68778 * 12 11 10 14 14 C 1.40763 * 119.98742 * 0.56696 * 13 12 11 15 15 C 1.40848 * 120.33383 * 179.73913 * 14 13 12 16 16 H 1.08000 * 120.00023 * 152.81800 * 15 14 13 17 17 C 1.40045 * 119.99904 * 332.81731 * 15 14 13 18 18 N 1.30796 * 119.99781 * 344.57657 * 17 15 14 19 19 Si 1.86796 * 119.99894 * 164.57056 * 17 15 14 20 20 H 1.48505 * 109.47000 * 90.00277 * 19 17 15 21 21 H 1.48500 * 109.47135 * 210.00043 * 19 17 15 22 22 H 1.48498 * 109.47419 * 330.00476 * 19 17 15 23 23 C 1.39740 * 119.81368 * 0.24892 * 8 7 6 24 24 C 1.37759 * 119.90617 * 359.49869 * 23 8 7 25 25 H 1.09002 * 109.46957 * 60.00442 * 1 2 3 26 26 H 1.09005 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47688 * 300.00257 * 1 2 3 28 28 H 1.08997 * 109.47688 * 239.99742 * 2 1 3 29 29 H 1.09002 * 109.46957 * 119.99558 * 2 1 3 30 30 H 1.08997 * 109.46966 * 59.99300 * 3 2 1 31 31 H 1.09003 * 109.46743 * 300.00235 * 3 2 1 32 32 H 1.08001 * 119.95513 * 359.94965 * 6 5 4 33 33 H 1.08000 * 120.04886 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.00942 * 359.97438 * 10 9 8 35 35 H 1.08000 * 119.65680 * 179.97438 * 11 10 9 36 36 H 1.08004 * 119.64645 * 179.97438 * 12 11 10 37 37 H 1.07992 * 120.00672 * 180.28114 * 13 12 11 38 38 H 0.97006 * 119.99953 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.04857 * 179.74427 * 23 8 7 40 40 H 1.08007 * 119.95451 * 180.25012 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0855 2.6527 0.0001 6 6 5.4734 2.7231 0.0001 7 6 6.1028 3.9486 -0.0009 8 6 5.3435 5.1218 -0.0024 9 6 6.0144 6.4384 -0.0029 10 6 7.0215 6.7151 0.9179 11 6 7.6434 7.9473 0.9103 12 6 7.2753 8.9218 -0.0094 13 6 6.2962 8.6785 -0.9276 14 6 5.6391 7.4338 -0.9423 15 6 4.6234 7.1767 -1.8836 16 1 4.4266 6.1638 -2.2026 17 6 3.8686 8.2345 -2.4057 18 7 3.8864 9.4029 -1.8182 19 14 2.8366 7.9766 -3.9412 20 1 1.4761 7.5251 -3.5532 21 1 2.7388 9.2540 -4.6922 22 1 3.4743 6.9457 -4.7990 23 6 3.9482 5.0464 0.0023 24 6 3.3268 3.8169 -0.0020 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 6.0594 1.8159 0.0013 33 1 7.1814 4.0025 -0.0013 34 1 7.3159 5.9658 1.6378 35 1 8.4237 8.1565 1.6271 36 1 7.7728 9.8804 -0.0001 37 1 6.0222 9.4423 -1.6401 38 1 3.3638 10.1358 -2.1801 39 1 3.3577 5.9506 0.0053 40 1 2.2483 3.7577 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241747548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -14.817262 kcal Electronic energy + Delta-G solvation = -21012.931707 eV Core-core repulsion = 17949.638141 eV Total energy + Delta-G solvation = -3063.293566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.65736 -38.01834 -36.48397 -33.94101 -33.73339 -31.08043 -30.47021 -29.51109 -27.73584 -26.34014 -25.22668 -22.62920 -22.02089 -21.27057 -20.52592 -19.62131 -17.78108 -17.25423 -16.16924 -15.77206 -15.51774 -15.03503 -14.28631 -14.09982 -13.79931 -13.73105 -13.33733 -13.06271 -12.79681 -12.56920 -12.36967 -12.20766 -12.08760 -11.66794 -11.41274 -11.25852 -11.17933 -11.11181 -10.99424 -10.68776 -10.48519 -10.40979 -10.21532 -9.60318 -9.43144 -9.24800 -8.36981 -7.88487 -7.42280 -7.03813 -6.76621 -4.39046 1.92876 2.04890 2.76058 3.02756 3.04210 3.08303 3.20170 3.45350 3.88274 4.47450 4.60014 4.77584 4.80520 5.10751 5.30335 5.32153 5.40619 5.47717 5.55541 5.67114 5.75667 5.82767 5.91852 5.96056 6.08295 6.12766 6.21385 6.31708 6.43233 6.58454 6.70775 6.94516 6.99210 7.06314 7.17653 7.28033 7.37871 7.48709 7.55889 7.84080 7.93210 8.03420 8.07541 8.23442 8.57178 8.81878 8.91475 10.11004 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.005122 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.703122 B = 5465.052820 C = 7047.005666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.060 3.940 4 O -0.324 6.324 5 C 0.097 3.903 6 C -0.155 4.155 7 C -0.094 4.094 8 C -0.014 4.014 9 C -0.182 4.182 10 C -0.074 4.074 11 C -0.243 4.243 12 C -0.103 4.103 13 C -0.158 4.158 14 C 0.130 3.870 15 C -0.452 4.452 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.903 3.097 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.059 4.059 24 C -0.210 4.210 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.131 0.869 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -10.782 1.712 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.016 4.016 4 O -0.238 6.238 5 C 0.053 3.947 6 C -0.174 4.174 7 C -0.112 4.112 8 C -0.014 4.014 9 C -0.183 4.183 10 C -0.092 4.092 11 C -0.262 4.262 12 C -0.121 4.121 13 C -0.177 4.177 14 C 0.127 3.873 15 C -0.481 4.481 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.077 4.077 24 C -0.229 4.229 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.571 -10.727 1.690 11.783 hybrid contribution -0.722 0.281 -0.676 1.028 sum -5.293 -10.446 1.014 11.755 Atomic orbital electron populations 1.21691 0.94534 1.02206 1.02274 1.21468 0.95819 0.95325 1.03403 1.22749 0.79452 0.98042 1.01327 1.85938 1.20472 1.27858 1.89571 1.18943 0.92146 0.83511 1.00059 1.20155 0.90995 0.98078 1.08122 1.21102 0.99411 0.90942 0.99764 1.18761 0.92389 0.92603 0.97634 1.18588 1.03592 0.94629 1.01497 1.20580 0.95579 0.95793 0.97254 1.20279 1.05748 0.95614 1.04552 1.20478 0.97966 0.97095 0.96589 1.21039 0.97023 0.98931 1.00738 1.17541 0.90196 0.90180 0.89369 1.19554 1.14005 0.94599 1.19923 0.89968 1.25925 0.96607 0.94450 0.97174 1.69803 1.33388 1.02560 1.35823 0.86383 0.80161 0.78995 0.81751 1.19409 1.20036 1.18357 1.21250 0.94557 0.96623 0.95284 1.21102 0.99187 0.92554 1.10041 0.92363 0.91975 0.92390 0.91027 0.91059 0.92375 0.92293 0.86346 0.86062 0.89208 0.89465 0.89534 0.86485 0.90771 0.85069 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.36 16 3 C 0.06 0.74 4.74 37.16 0.18 0.92 16 4 O -0.32 -5.16 10.13 -19.17 -0.19 -5.35 16 5 C 0.10 1.73 6.70 -39.04 -0.26 1.47 16 6 C -0.15 -2.74 9.97 -39.49 -0.39 -3.13 16 7 C -0.09 -1.80 9.52 -39.19 -0.37 -2.17 16 8 C -0.01 -0.29 4.92 -104.88 -0.52 -0.81 16 9 C -0.18 -4.33 5.52 -104.23 -0.58 -4.91 16 10 C -0.07 -1.66 9.51 -39.29 -0.37 -2.03 16 11 C -0.24 -5.40 10.03 -39.39 -0.40 -5.80 16 12 C -0.10 -2.39 9.96 -39.97 -0.40 -2.79 16 13 C -0.16 -4.02 8.61 -39.29 -0.34 -4.36 16 14 C 0.13 3.34 5.55 -106.55 -0.59 2.75 16 15 C -0.45 -11.48 7.12 -37.92 -0.27 -11.75 16 16 H 0.08 2.08 6.66 -52.49 -0.35 1.73 16 17 C 0.08 1.86 5.17 -17.32 -0.09 1.77 16 18 N -0.79 -19.72 10.99 55.55 0.61 -19.11 16 19 Si 0.90 18.35 29.59 -169.99 -5.03 13.32 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 23 C -0.06 -1.23 8.01 -39.20 -0.31 -1.54 16 24 C -0.21 -3.82 9.02 -39.49 -0.36 -4.17 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 31 H 0.06 0.72 7.65 -51.93 -0.40 0.33 16 32 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.12 2.14 8.04 -52.49 -0.42 1.72 16 34 H 0.09 1.80 8.04 -52.49 -0.42 1.38 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.12 3.05 6.27 -52.49 -0.33 2.72 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.13 2.88 7.33 -52.49 -0.38 2.49 16 40 H 0.12 1.84 6.28 -52.48 -0.33 1.51 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -26.93 333.67 -10.00 -36.93 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.55 Total: 7.89 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: -4.87 Total: -38.71 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.61 Total: -19.11 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.19 Total: -5.35 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.93 -10.00 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241747548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.112 kcal (2) G-P(sol) polarization free energy of solvation -26.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds