Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37666 * 119.96561 * 2 1 4 4 C 1.39767 * 119.93429 * 180.02562 * 3 2 1 5 5 C 1.47778 * 120.07161 * 179.97438 * 4 3 2 6 6 C 1.40002 * 119.45946 * 179.97438 * 5 4 3 7 7 C 1.36538 * 119.46604 * 179.97438 * 6 5 4 8 8 C 1.41336 * 118.42293 * 359.97438 * 7 6 5 9 9 C 1.41013 * 120.54829 * 179.72740 * 8 7 6 10 10 H 1.07997 * 120.00002 * 149.95056 * 9 8 7 11 11 C 1.39976 * 119.99832 * 329.95641 * 9 8 7 12 12 N 1.30817 * 120.00183 * 162.12635 * 11 9 8 13 13 Si 1.86805 * 119.99919 * 342.12540 * 11 9 8 14 14 H 1.48497 * 109.46902 * 95.38374 * 13 11 9 15 15 H 1.48496 * 109.47111 * 215.38233 * 13 11 9 16 16 H 1.48502 * 109.47152 * 335.38504 * 13 11 9 17 17 C 1.40965 * 118.90503 * 359.97438 * 8 7 6 18 18 C 1.50702 * 119.79275 * 179.97438 * 17 8 7 19 19 N 1.31242 * 120.40929 * 359.97438 * 17 8 7 20 20 C 1.39777 * 119.86039 * 0.25039 * 4 3 2 21 21 C 1.37664 * 119.92783 * 359.51294 * 20 4 3 22 22 C 1.50700 * 119.96565 * 180.23022 * 21 20 4 23 23 C 1.39199 * 119.96359 * 180.02562 * 2 1 3 24 24 N 1.39257 * 119.93303 * 0.02562 * 23 2 1 25 25 H 1.09005 * 109.46902 * 90.00046 * 1 2 3 26 26 H 1.08998 * 109.47458 * 210.00137 * 1 2 3 27 27 H 1.09003 * 109.47293 * 330.00415 * 1 2 3 28 28 H 1.07997 * 120.03606 * 359.97105 * 3 2 1 29 29 H 1.07997 * 120.26649 * 359.95477 * 6 5 4 30 30 H 1.07995 * 120.78473 * 180.02562 * 7 6 5 31 31 H 0.97002 * 120.00364 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47100 * 89.99980 * 18 17 8 33 33 H 1.09005 * 109.46886 * 210.00317 * 18 17 8 34 34 H 1.09000 * 109.47152 * 330.00003 * 18 17 8 35 35 H 1.08002 * 120.03214 * 179.73304 * 20 4 3 36 36 H 1.08995 * 109.47594 * 270.25797 * 22 21 20 37 37 H 1.09003 * 109.46954 * 30.26265 * 22 21 20 38 38 H 1.09003 * 109.47091 * 150.25603 * 22 21 20 39 39 H 0.96996 * 120.00008 * 0.02562 * 24 23 2 40 40 H 0.97001 * 120.00075 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1926 0.0000 4 6 3.5923 1.1919 -0.0005 5 6 4.3335 2.4703 -0.0011 6 6 5.7334 2.4546 -0.0011 7 6 6.4184 3.6358 -0.0022 8 6 5.6806 4.8413 -0.0038 9 6 6.3422 6.0865 0.0008 10 1 5.8828 6.9439 -0.4684 11 6 7.5946 6.2113 0.6135 12 7 8.3622 7.2323 0.3310 13 14 8.1699 4.9199 1.8345 14 1 9.0154 3.9194 1.1352 15 1 8.9608 5.5720 2.9089 16 1 6.9907 4.2417 2.4301 17 6 4.2723 4.7782 -0.0048 18 6 3.4658 6.0513 -0.0060 19 7 3.6593 3.6178 -0.0048 20 6 4.2876 -0.0207 -0.0064 21 6 3.5942 -1.2100 -0.0014 22 6 4.3430 -2.5178 -0.0025 23 6 2.2022 -1.2059 -0.0005 24 7 1.5038 -2.4107 -0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6547 2.1279 -0.0005 29 1 6.2672 1.5158 0.0000 30 1 7.4982 3.6485 -0.0026 31 1 9.2299 7.3190 0.7559 32 1 3.2722 6.3577 -1.0339 33 1 2.5192 5.8821 0.5073 34 1 4.0228 6.8347 0.5079 35 1 5.3676 -0.0245 -0.0112 36 1 4.5232 -2.8326 -1.0303 37 1 5.2961 -2.3912 0.5112 38 1 3.7514 -3.2756 0.5112 39 1 0.5338 -2.4089 -0.0024 40 1 1.9873 -3.2516 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241882465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = 31.087586 kcal Electronic energy + Delta-G solvation = -21159.753921 eV Core-core repulsion = 18130.743689 eV Total energy + Delta-G solvation = -3029.010231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.58416 -38.52292 -34.85108 -33.80895 -33.34823 -31.88840 -31.44212 -29.41610 -27.35958 -26.83756 -26.16154 -24.52093 -22.18937 -21.23163 -20.24933 -19.61101 -17.54320 -16.96923 -16.76658 -15.81836 -15.01708 -14.92707 -14.07770 -13.81652 -13.78435 -13.32863 -13.24638 -13.06244 -12.95577 -12.84219 -12.51807 -12.34799 -11.91429 -11.81714 -11.75465 -11.61407 -11.34813 -11.23596 -10.93367 -10.76986 -10.54868 -10.32711 -10.08187 -9.90496 -9.51903 -8.45607 -8.16971 -8.14154 -7.89054 -7.15391 -6.78235 -4.57299 1.65708 1.85466 2.55219 2.74642 3.01161 3.10918 3.22011 3.83705 4.05248 4.15562 4.61959 5.05349 5.08750 5.23236 5.37985 5.45532 5.56772 5.68229 5.71026 5.77317 5.81009 5.88179 5.94792 6.05330 6.07747 6.27682 6.39045 6.43067 6.58604 6.60554 6.66351 6.73065 6.78511 6.86892 6.92432 7.15593 7.24993 7.34017 7.49344 7.63051 7.74113 7.82235 7.89596 8.12684 8.39310 8.55935 9.43851 9.84254 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004465 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.885533 B = 6269.563902 C = 7179.714679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.164 4.164 3 C -0.063 4.063 4 C -0.035 4.035 5 C 0.015 3.985 6 C -0.108 4.108 7 C -0.211 4.211 8 C 0.048 3.952 9 C -0.419 4.419 10 H 0.100 0.900 11 C 0.083 3.917 12 N -0.792 5.792 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.286 1.286 16 H -0.244 1.244 17 C 0.031 3.969 18 C -0.075 4.075 19 N -0.445 5.445 20 C -0.087 4.087 21 C -0.162 4.162 22 C -0.099 4.099 23 C 0.194 3.806 24 N -0.883 5.883 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.289 0.711 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.392 0.608 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 -13.800 0.739 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.168 4.168 3 C -0.082 4.082 4 C -0.038 4.038 5 C -0.118 4.118 6 C -0.129 4.129 7 C -0.235 4.235 8 C 0.043 3.957 9 C -0.447 4.447 10 H 0.118 0.882 11 C -0.138 4.138 12 N -0.414 5.414 13 Si 0.736 3.264 14 H -0.194 1.194 15 H -0.214 1.214 16 H -0.167 1.167 17 C -0.116 4.116 18 C -0.132 4.132 19 N -0.154 5.154 20 C -0.107 4.107 21 C -0.167 4.167 22 C -0.156 4.156 23 C 0.091 3.909 24 N -0.425 5.425 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.221 0.779 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.462 -13.598 0.744 16.033 hybrid contribution 1.406 -0.738 0.443 1.649 sum -7.056 -14.336 1.188 16.022 Atomic orbital electron populations 1.20532 0.91981 1.01763 1.01360 1.19232 0.95221 0.91771 1.10609 1.20910 0.93417 0.96726 0.97180 1.18375 0.92471 0.91061 1.01894 1.18753 0.89355 0.90244 1.13413 1.21217 0.94565 0.97413 0.99660 1.21007 0.98605 0.92752 1.11173 1.18489 0.92720 0.93398 0.91128 1.19508 0.99919 0.96214 1.29078 0.88206 1.26256 0.94997 0.96127 0.96447 1.69675 1.08949 1.28291 1.34533 0.86306 0.80103 0.80161 0.79845 1.19360 1.21358 1.16689 1.21042 0.90848 0.92123 1.07602 1.20308 0.98093 0.93991 1.00816 1.66820 1.41160 0.97720 1.09664 1.20814 0.99145 0.90708 1.00031 1.19089 0.91388 0.95326 1.10854 1.20528 0.99563 0.94191 1.01355 1.17328 0.90461 0.85895 0.97191 1.42408 1.08508 1.05156 1.86429 0.92145 0.92863 0.91655 0.85379 0.87727 0.87388 0.90008 0.92952 0.92937 0.91042 0.86363 0.92137 0.91818 0.92764 0.77898 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.56 36.01 0.34 -0.82 16 2 C -0.16 -2.51 5.89 -104.47 -0.62 -3.13 16 3 C -0.06 -1.15 9.21 -39.22 -0.36 -1.51 16 4 C -0.04 -0.70 5.88 -104.85 -0.62 -1.32 16 5 C 0.02 0.34 6.74 -82.76 -0.56 -0.21 16 6 C -0.11 -2.43 9.38 -39.53 -0.37 -2.80 16 7 C -0.21 -5.06 7.19 -39.02 -0.28 -5.34 16 8 C 0.05 1.20 5.11 -106.64 -0.54 0.65 16 9 C -0.42 -10.73 8.53 -37.88 -0.32 -11.05 16 10 H 0.10 2.62 7.23 -52.49 -0.38 2.24 16 11 C 0.08 2.07 5.42 -17.33 -0.09 1.97 16 12 N -0.79 -19.92 13.93 55.55 0.77 -19.15 16 13 Si 0.91 20.06 24.53 -169.99 -4.17 15.89 16 14 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 15 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.24 -5.65 6.85 56.52 0.39 -5.27 16 17 C 0.03 0.74 6.86 -81.81 -0.56 0.18 16 18 C -0.07 -1.52 9.59 36.01 0.35 -1.17 16 19 N -0.45 -10.57 9.30 -5.41 -0.05 -10.62 16 20 C -0.09 -1.51 9.05 -39.22 -0.36 -1.87 16 21 C -0.16 -2.41 5.89 -104.47 -0.62 -3.03 16 22 C -0.10 -1.11 9.56 36.01 0.34 -0.77 16 23 C 0.19 2.77 6.72 -83.77 -0.56 2.21 16 24 N -0.88 -9.09 8.87 32.44 0.29 -8.80 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.13 2.40 7.51 -52.49 -0.39 2.01 16 29 H 0.10 2.02 6.14 -52.49 -0.32 1.70 16 30 H 0.11 2.52 4.84 -52.49 -0.25 2.27 16 31 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.44 6.84 -51.93 -0.36 1.09 16 35 H 0.12 1.92 6.14 -52.49 -0.32 1.59 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.05 0.50 6.54 -51.93 -0.34 0.17 16 39 H 0.39 3.36 6.80 -40.82 -0.28 3.08 16 40 H 0.39 3.31 6.80 -40.82 -0.28 3.04 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -28.24 320.28 -8.12 -36.36 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.96 Total: 9.50 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -4.82 Total: -28.01 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 1.01 Total: -38.57 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.24 -8.12 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241882465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.448 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds