Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99397 * 2 1 4 4 H 1.09002 * 109.47805 * 329.99829 * 3 2 1 5 5 C 1.53002 * 109.47349 * 90.00086 * 3 2 1 6 6 C 1.50703 * 109.46978 * 209.99850 * 3 2 1 7 7 C 1.38342 * 119.94191 * 325.00039 * 6 3 2 8 8 C 1.38294 * 120.24874 * 180.02562 * 7 6 3 9 9 C 1.38047 * 120.11543 * 359.97438 * 8 7 6 10 10 C 1.39308 * 119.88053 * 359.97438 * 9 8 7 11 11 C 1.48406 * 120.11813 * 180.02562 * 10 9 8 12 12 C 1.39735 * 119.99516 * 179.72729 * 11 10 9 13 13 C 1.38390 * 120.37671 * 179.76402 * 12 11 10 14 14 C 1.37725 * 120.38029 * 0.51706 * 13 12 11 15 15 C 1.40755 * 119.98557 * 359.73615 * 14 13 12 16 16 C 1.41418 * 120.18455 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99928 * 154.79968 * 16 15 14 18 18 C 1.39931 * 120.00496 * 334.80224 * 16 15 14 19 19 N 1.30840 * 119.99740 * 342.74028 * 18 16 15 20 20 Si 1.86791 * 120.00537 * 162.73611 * 18 16 15 21 21 H 1.48503 * 109.47439 * 90.00137 * 20 18 16 22 22 H 1.48507 * 109.47582 * 210.00183 * 20 18 16 23 23 H 1.48501 * 109.47034 * 330.00090 * 20 18 16 24 24 C 1.38726 * 120.00334 * 0.02562 * 11 10 9 25 25 C 1.38003 * 119.93868 * 144.72633 * 6 3 2 26 26 H 1.08993 * 109.47669 * 299.99741 * 1 2 3 27 27 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47459 * 60.00596 * 1 2 3 29 29 H 1.09000 * 109.47575 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.47057 * 299.99551 * 5 3 2 31 31 H 1.08997 * 109.47079 * 59.99610 * 5 3 2 32 32 H 1.08007 * 119.87327 * 359.97438 * 7 6 3 33 33 H 1.07995 * 119.94210 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.05862 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.81187 * 359.97438 * 12 11 10 36 36 H 1.08000 * 119.81411 * 180.25571 * 13 12 11 37 37 H 1.07998 * 120.00652 * 179.72674 * 14 13 12 38 38 H 0.96998 * 119.99959 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.18357 * 359.97438 * 24 11 10 40 40 H 1.07994 * 120.06234 * 0.02562 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 3.3386 1.2640 -0.7104 7 6 4.1438 0.1441 -0.6041 8 6 5.3643 0.0995 -1.2528 9 6 5.7853 1.1734 -2.0112 10 6 4.9780 2.3033 -2.1226 11 6 5.4252 3.4606 -2.9369 12 6 4.6109 4.5904 -3.0516 13 6 5.0222 5.6760 -3.8049 14 6 6.2340 5.6510 -4.4588 15 6 7.0644 4.5189 -4.3583 16 6 8.3098 4.4889 -5.0276 17 1 9.1055 3.8580 -4.6597 18 6 8.5114 5.2767 -6.1664 19 7 7.4851 5.7714 -6.8096 20 14 10.2456 5.6222 -6.7682 21 1 10.6553 4.5672 -7.7297 22 1 10.2819 6.9458 -7.4406 23 1 11.1785 5.6282 -5.6128 24 6 6.6488 3.4184 -3.5893 25 6 3.7471 2.3410 -1.4704 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 2.6612 2.7671 1.4425 30 1 1.2567 1.8015 1.9563 31 1 2.8828 1.0776 1.9563 32 1 3.8183 -0.6982 -0.0114 33 1 5.9887 -0.7774 -1.1668 34 1 6.7384 1.1374 -2.5178 35 1 3.6565 4.6178 -2.5467 36 1 4.3874 6.5461 -3.8840 37 1 6.5471 6.4998 -5.0486 38 1 7.6248 6.3178 -7.5988 39 1 7.2785 2.5450 -3.5063 40 1 3.1160 3.2132 -1.5561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242025049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = -14.789313 kcal Electronic energy + Delta-G solvation = -20713.584347 eV Core-core repulsion = 17650.291994 eV Total energy + Delta-G solvation = -3063.292354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51113 -38.04373 -36.97045 -33.85681 -32.71355 -31.37558 -30.03817 -29.16121 -27.75805 -26.78209 -25.35533 -23.54075 -22.57482 -21.43325 -20.16679 -19.55441 -17.44314 -16.57682 -16.35688 -15.61885 -15.28669 -15.24933 -14.58103 -14.29006 -14.16577 -13.43855 -13.25578 -12.98091 -12.86844 -12.68578 -12.64702 -12.29069 -12.09889 -11.84992 -11.58852 -11.32372 -11.16932 -11.07235 -10.78281 -10.72894 -10.51945 -10.36216 -9.85009 -9.65271 -9.39267 -9.23474 -8.71136 -8.44410 -7.51876 -6.97203 -6.77164 -4.39065 1.52045 1.72146 2.77845 3.05156 3.06597 3.10462 3.21614 3.66848 3.92030 4.24204 4.67794 4.77007 4.99722 5.10395 5.17239 5.28175 5.32544 5.40821 5.48840 5.56072 5.61608 5.66060 5.68912 5.89734 5.93803 6.08087 6.17744 6.29275 6.38961 6.51640 6.75599 6.81027 6.88959 6.92078 7.01344 7.17533 7.19492 7.35394 7.39861 7.55821 7.82498 7.98573 8.02758 8.23648 8.58556 8.85891 8.91445 10.17572 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.003354 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.653384 B = 8346.889144 C = 8840.173178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.129 3.871 4 H 0.067 0.933 5 C -0.167 4.167 6 C -0.093 4.093 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.011 4.011 11 C -0.042 4.042 12 C -0.221 4.221 13 C -0.108 4.108 14 C -0.154 4.154 15 C 0.107 3.893 16 C -0.465 4.465 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.796 5.796 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.202 4.202 25 C -0.113 4.113 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.098 0.902 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 -6.572 10.216 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.072 3.928 4 H 0.085 0.915 5 C -0.225 4.225 6 C -0.093 4.093 7 C -0.130 4.130 8 C -0.140 4.140 9 C -0.134 4.134 10 C -0.011 4.011 11 C -0.042 4.042 12 C -0.240 4.240 13 C -0.127 4.127 14 C -0.174 4.174 15 C 0.105 3.895 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.421 5.421 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.221 4.221 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.606 -6.597 9.998 14.749 hybrid contribution 0.474 0.428 -0.463 0.789 sum -8.132 -6.169 9.535 13.967 Atomic orbital electron populations 1.22769 0.81373 1.02568 0.99867 1.87929 1.19286 1.27673 1.95105 1.20866 0.92127 0.84608 0.95197 0.91490 1.22249 1.02012 1.02202 0.96024 1.19513 0.95273 0.95324 0.99171 1.20804 0.94101 0.97619 1.00501 1.21033 0.96451 0.98395 0.98148 1.21370 1.00135 0.93018 0.98907 1.19073 0.93076 0.93841 0.95117 1.18316 0.95492 0.92351 0.98039 1.20416 0.99991 0.95734 1.07852 1.20631 0.96889 0.96891 0.98274 1.21425 0.95041 0.99018 1.01888 1.17541 0.92598 0.89786 0.89608 1.19542 0.98547 1.22515 1.08843 0.90430 1.25890 0.98683 0.93708 0.95851 1.69821 1.31816 1.25780 1.14730 0.86332 0.82625 0.78458 0.79435 1.19504 1.20109 1.18461 1.21103 0.96381 0.98613 1.06005 1.21009 0.96722 0.97969 0.97353 0.94224 0.89770 0.94007 0.91208 0.92528 0.91622 0.86303 0.86454 0.85623 0.89142 0.89189 0.86356 0.90877 0.88446 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -4.79 9.49 -35.23 -0.33 -5.13 16 3 C 0.13 1.62 2.93 -27.88 -0.08 1.54 16 4 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 5 C -0.17 -1.80 9.51 37.16 0.35 -1.44 16 6 C -0.09 -1.41 5.00 -104.67 -0.52 -1.94 16 7 C -0.11 -1.68 9.34 -39.52 -0.37 -2.05 16 8 C -0.12 -1.87 10.03 -39.63 -0.40 -2.27 16 9 C -0.12 -2.07 9.42 -39.25 -0.37 -2.44 16 10 C -0.01 -0.22 5.88 -104.90 -0.62 -0.83 16 11 C -0.04 -0.95 5.87 -104.97 -0.62 -1.56 16 12 C -0.22 -4.90 9.44 -38.97 -0.37 -5.27 16 13 C -0.11 -2.52 10.01 -39.71 -0.40 -2.92 16 14 C -0.15 -3.98 8.69 -38.82 -0.34 -4.32 16 15 C 0.11 2.83 5.56 -106.87 -0.59 2.24 16 16 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 17 H 0.08 1.96 7.90 -52.48 -0.41 1.54 16 18 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 19 N -0.80 -20.48 10.97 55.55 0.61 -19.87 16 20 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.20 -4.92 9.17 -38.53 -0.35 -5.27 16 25 C -0.11 -1.93 9.05 -39.25 -0.36 -2.28 16 26 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.12 1.62 7.62 -52.48 -0.40 1.22 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 2.19 6.20 -52.49 -0.33 1.87 16 35 H 0.09 1.76 6.18 -52.49 -0.32 1.44 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.10 2.23 6.19 -52.49 -0.32 1.90 16 40 H 0.12 1.95 6.19 -52.49 -0.32 1.63 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -28.06 333.10 -9.42 -37.48 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.32 Total: 7.20 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: -4.36 Total: -38.22 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.61 Total: -19.87 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.33 Total: -5.13 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.06 -9.42 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242025049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.693 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds