Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99379 * 2 1 4 4 H 1.08991 * 109.47638 * 329.99743 * 3 2 1 5 5 C 1.52999 * 109.46990 * 90.00577 * 3 2 1 6 6 C 1.50703 * 109.46735 * 209.99964 * 3 2 1 7 7 C 1.38419 * 119.92666 * 325.00229 * 6 3 2 8 8 C 1.38370 * 120.30063 * 179.97438 * 7 6 3 9 9 C 1.37945 * 120.15110 * 0.04196 * 8 7 6 10 10 C 1.39635 * 119.84924 * 359.97438 * 9 8 7 11 11 C 1.47866 * 120.14759 * 179.97438 * 10 9 8 12 12 C 1.39166 * 120.33725 * 130.00267 * 11 10 9 13 13 C 1.38093 * 119.98661 * 179.72062 * 12 11 10 14 14 C 1.38917 * 120.67048 * 0.27498 * 13 12 11 15 15 C 1.36432 * 120.69118 * 359.97438 * 14 13 12 16 16 C 1.40752 * 119.98400 * 359.97438 * 15 14 13 17 17 C 1.40887 * 120.32860 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99843 * 153.68084 * 17 16 15 19 19 C 1.40071 * 120.00021 * 333.68308 * 17 16 15 20 20 N 1.30763 * 120.00169 * 344.35152 * 19 17 16 21 21 Si 1.86803 * 119.99750 * 164.34843 * 19 17 16 22 22 H 1.48495 * 109.47249 * 59.99901 * 21 19 17 23 23 H 1.48506 * 109.46943 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47202 * 299.99872 * 21 19 17 25 25 C 1.37905 * 119.92636 * 145.28278 * 6 3 2 26 26 H 1.09000 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46962 * 299.99643 * 1 2 3 28 28 H 1.08998 * 109.47473 * 59.99849 * 1 2 3 29 29 H 1.09005 * 109.47086 * 179.97438 * 5 3 2 30 30 H 1.09006 * 109.46997 * 299.99221 * 5 3 2 31 31 H 1.08993 * 109.47769 * 59.99671 * 5 3 2 32 32 H 1.07993 * 119.85128 * 359.97438 * 7 6 3 33 33 H 1.07998 * 119.92581 * 180.02562 * 8 7 6 34 34 H 1.08006 * 120.07808 * 180.02562 * 9 8 7 35 35 H 1.07996 * 120.00146 * 359.97438 * 12 11 10 36 36 H 1.07994 * 119.66127 * 180.25467 * 13 12 11 37 37 H 1.08007 * 119.65190 * 179.97438 * 14 13 12 38 38 H 1.08000 * 120.01089 * 179.97438 * 15 14 13 39 39 H 0.97007 * 120.00435 * 179.97438 * 20 19 17 40 40 H 1.08007 * 120.07628 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3385 1.2640 -0.7104 7 6 4.1439 0.1433 -0.6039 8 6 5.3648 0.0967 -1.2533 9 6 5.7878 1.1688 -2.0113 10 6 4.9805 2.3026 -2.1229 11 6 5.4277 3.4558 -2.9333 12 6 4.5812 4.0165 -3.8850 13 6 5.0041 5.0970 -4.6338 14 6 6.2734 5.6315 -4.4524 15 6 7.1275 5.1003 -3.5306 16 6 6.7253 3.9994 -2.7512 17 6 7.6012 3.4455 -1.7969 18 1 7.2045 2.9247 -0.9379 19 6 8.9866 3.5701 -1.9621 20 7 9.4780 3.9173 -3.1231 21 14 10.1321 3.2405 -0.5238 22 1 9.9508 1.8425 -0.0569 23 1 11.5389 3.4402 -0.9556 24 1 9.8172 4.1773 0.5846 25 6 3.7516 2.3450 -1.4605 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.6613 2.7671 1.4425 30 1 1.2567 1.8015 1.9564 31 1 2.8829 1.0776 1.9563 32 1 3.8179 -0.6985 -0.0111 33 1 5.9882 -0.7809 -1.1663 34 1 6.7408 1.1309 -2.5181 35 1 3.5923 3.6092 -4.0351 36 1 4.3414 5.5305 -5.3681 37 1 6.5874 6.4765 -5.0473 38 1 8.1120 5.5243 -3.3990 39 1 10.4374 4.0040 -3.2375 40 1 3.1242 3.2205 -1.5396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242032091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -15.578306 kcal Electronic energy + Delta-G solvation = -21351.391514 eV Core-core repulsion = 18288.064947 eV Total energy + Delta-G solvation = -3063.326567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.23535 -37.94861 -36.82143 -33.75001 -32.59557 -31.34155 -29.74796 -28.86597 -27.88096 -26.68263 -25.33077 -23.22821 -22.31386 -21.03836 -20.50974 -19.26883 -17.35554 -16.41276 -16.31921 -15.39141 -15.14993 -15.08220 -14.61193 -14.06640 -14.00124 -13.42684 -13.23951 -12.99373 -12.65095 -12.58853 -12.38767 -12.16773 -11.77347 -11.63068 -11.51292 -11.24355 -11.10589 -10.94348 -10.89016 -10.56740 -10.47901 -10.25667 -9.67846 -9.67304 -9.36758 -9.24547 -8.25735 -8.05726 -7.43582 -7.17917 -6.80187 -4.39894 1.96537 2.05548 2.77898 3.03099 3.04324 3.07238 3.21583 3.82707 3.88488 4.49400 4.59422 4.96317 5.17654 5.23043 5.29143 5.43683 5.57200 5.58517 5.69101 5.73673 5.77729 5.83536 5.97275 6.19269 6.23175 6.26365 6.29967 6.38154 6.56437 6.70976 6.83800 6.99177 7.02664 7.15828 7.21672 7.29541 7.38171 7.49421 7.55166 7.70109 7.90147 8.01972 8.06601 8.22478 8.56416 8.81018 8.90440 10.10123 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.005298 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.349077 B = 5283.440254 C = 6408.041598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.132 3.868 4 H 0.064 0.936 5 C -0.167 4.167 6 C -0.098 4.098 7 C -0.118 4.118 8 C -0.131 4.131 9 C -0.094 4.094 10 C 0.020 3.980 11 C -0.188 4.188 12 C -0.072 4.072 13 C -0.244 4.244 14 C -0.102 4.102 15 C -0.159 4.159 16 C 0.131 3.869 17 C -0.450 4.450 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.789 5.789 21 Si 0.905 3.095 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.122 4.122 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.282 0.718 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -4.268 5.342 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.074 3.926 4 H 0.082 0.918 5 C -0.225 4.225 6 C -0.098 4.098 7 C -0.136 4.136 8 C -0.149 4.149 9 C -0.112 4.112 10 C 0.020 3.980 11 C -0.189 4.189 12 C -0.090 4.090 13 C -0.264 4.264 14 C -0.120 4.120 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.479 4.479 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.414 5.414 21 Si 0.729 3.271 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.140 4.140 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.120 -4.398 5.219 11.391 hybrid contribution 0.422 0.135 0.518 0.681 sum -8.698 -4.263 5.737 11.258 Atomic orbital electron populations 1.22747 0.81676 1.02391 0.99729 1.87940 1.19019 1.27929 1.95092 1.20853 0.92327 0.84277 0.95113 0.91782 1.22248 1.01755 1.02280 0.96172 1.19395 0.95071 0.95507 0.99873 1.20724 0.94306 0.97588 1.01012 1.21018 0.96345 0.98622 0.98884 1.21480 0.99736 0.92113 0.97849 1.18741 0.92067 0.93135 0.94040 1.18605 0.97588 0.99521 1.03202 1.20562 0.96876 0.95647 0.95906 1.20269 0.97540 1.02530 1.06018 1.20478 0.94261 0.98840 0.98436 1.21064 0.99805 0.97555 0.99419 1.17526 0.89709 0.89466 0.90506 1.19573 0.90192 1.30788 1.07363 0.89888 1.25939 0.99338 0.92751 0.96152 1.69781 1.14934 1.33906 1.22773 0.86401 0.78502 0.80251 0.81925 1.18747 1.20294 1.18754 1.21008 0.97354 0.97511 0.98161 0.89914 0.94350 0.94141 0.91208 0.92790 0.91654 0.86840 0.86984 0.85360 0.89306 0.89492 0.89529 0.86352 0.90663 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.33 9.49 -35.23 -0.33 -5.67 16 3 C 0.13 1.87 2.93 -27.88 -0.08 1.78 16 4 H 0.06 0.84 7.69 -51.93 -0.40 0.44 16 5 C -0.17 -2.10 9.51 37.16 0.35 -1.74 16 6 C -0.10 -1.69 5.00 -104.68 -0.52 -2.22 16 7 C -0.12 -2.05 9.35 -39.47 -0.37 -2.42 16 8 C -0.13 -2.37 10.03 -39.64 -0.40 -2.77 16 9 C -0.09 -1.96 7.98 -39.17 -0.31 -2.27 16 10 C 0.02 0.44 4.93 -104.90 -0.52 -0.08 16 11 C -0.19 -4.48 5.53 -104.23 -0.58 -5.06 16 12 C -0.07 -1.61 9.52 -39.29 -0.37 -1.99 16 13 C -0.24 -5.44 10.03 -39.38 -0.40 -5.83 16 14 C -0.10 -2.36 9.96 -39.98 -0.40 -2.76 16 15 C -0.16 -4.04 8.62 -39.28 -0.34 -4.38 16 16 C 0.13 3.36 5.56 -106.56 -0.59 2.77 16 17 C -0.45 -11.42 7.13 -37.89 -0.27 -11.69 16 18 H 0.08 2.09 6.59 -52.48 -0.35 1.74 16 19 C 0.08 1.86 5.17 -17.32 -0.09 1.77 16 20 N -0.79 -19.66 10.94 55.55 0.61 -19.05 16 21 Si 0.90 18.33 29.59 -169.99 -5.03 13.30 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.12 -2.33 9.16 -39.17 -0.36 -2.69 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 28 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 1.80 7.62 -52.49 -0.40 1.40 16 33 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.13 2.85 7.29 -52.48 -0.38 2.47 16 35 H 0.09 1.80 8.05 -52.49 -0.42 1.37 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.12 3.08 6.21 -52.49 -0.33 2.75 16 39 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 40 H 0.11 2.01 8.05 -52.48 -0.42 1.58 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -26.89 334.79 -9.47 -36.36 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.61 Total: 8.18 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: -4.15 Total: -38.16 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.33 Total: -5.67 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.89 -9.47 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242032091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.781 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds