Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38887 * 119.24289 * 2 1 4 4 C 1.36872 * 119.82298 * 180.02562 * 3 2 1 5 5 C 1.41119 * 118.40787 * 359.97438 * 4 3 2 6 6 C 1.40820 * 120.72335 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99876 * 150.83523 * 6 5 4 8 8 C 1.40040 * 120.00314 * 330.83216 * 6 5 4 9 9 N 1.30791 * 120.00110 * 162.87221 * 8 6 5 10 10 Si 1.86804 * 119.99859 * 342.87281 * 8 6 5 11 11 H 1.48496 * 109.47217 * 90.39815 * 10 8 6 12 12 H 1.48498 * 109.47051 * 210.40091 * 10 8 6 13 13 H 1.48506 * 109.47140 * 330.39977 * 10 8 6 14 14 C 1.41968 * 118.54948 * 359.97438 * 5 4 3 15 15 C 1.47562 * 120.00323 * 179.97438 * 14 5 4 16 16 C 1.39725 * 120.20323 * 310.27914 * 15 14 5 17 17 C 1.37800 * 119.92087 * 180.02562 * 16 15 14 18 18 C 1.38594 * 120.34075 * 359.97438 * 17 16 15 19 19 C 1.38073 * 120.41808 * 0.02562 * 18 17 16 20 20 C 1.38828 * 120.07099 * 0.27105 * 19 18 17 21 21 N 1.39115 * 120.16684 * 179.72373 * 20 19 18 22 22 C 1.46892 * 111.00224 * 299.99923 * 21 20 19 23 23 C 1.46903 * 111.00011 * 63.95852 * 21 20 19 24 24 N 1.31722 * 119.23904 * 180.27340 * 2 1 3 25 25 H 1.09003 * 109.46905 * 90.00482 * 1 2 3 26 26 H 1.08997 * 109.47206 * 209.99901 * 1 2 3 27 27 H 1.08997 * 109.47125 * 330.00378 * 1 2 3 28 28 H 1.07995 * 120.08814 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.79500 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00241 * 180.02562 * 9 8 6 31 31 H 1.08004 * 120.03567 * 0.04974 * 16 15 14 32 32 H 1.08002 * 119.82772 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.79171 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.96599 * 179.97438 * 19 18 17 35 35 H 1.08999 * 109.47023 * 60.00554 * 22 21 20 36 36 H 1.09004 * 109.46856 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.47549 * 299.99935 * 22 21 20 38 38 H 1.08997 * 109.47275 * 59.99034 * 23 21 20 39 39 H 1.08999 * 109.47343 * 179.97438 * 23 21 20 40 40 H 1.08999 * 109.47095 * 299.99690 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2119 0.0000 4 6 3.5541 1.2257 -0.0005 5 6 4.2380 -0.0087 -0.0005 6 6 5.6456 -0.0513 -0.0016 7 1 6.1610 -0.8839 0.4542 8 6 6.3771 0.9857 -0.5937 9 7 7.6468 1.1319 -0.3157 10 14 5.5396 2.1602 -1.7805 11 1 4.9952 3.3192 -1.0286 12 1 6.5260 2.6390 -2.7819 13 1 4.4316 1.4559 -2.4747 14 6 3.4760 -1.2065 0.0006 15 6 4.1582 -2.5150 0.0001 16 6 5.1743 -2.7776 -0.9223 17 6 5.8071 -4.0017 -0.9179 18 6 5.4414 -4.9756 -0.0022 19 6 4.4391 -4.7312 0.9155 20 6 3.7859 -3.5061 0.9225 21 7 2.7719 -3.2598 1.8425 22 6 1.6705 -4.2182 1.6812 23 6 3.2912 -3.2808 3.2165 24 7 2.1504 -1.1494 -0.0055 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1408 -0.0004 29 1 4.0977 2.1590 -0.0010 30 1 8.1534 1.8504 -0.7255 31 1 5.4637 -2.0218 -1.6375 32 1 6.5926 -4.2029 -1.6313 33 1 5.9435 -5.9318 -0.0064 34 1 4.1597 -5.4955 1.6256 35 1 2.0441 -5.2304 1.8357 36 1 0.8917 -4.0031 2.4129 37 1 1.2585 -4.1324 0.6757 38 1 4.0576 -2.5137 3.3271 39 1 2.4779 -3.0850 3.9153 40 1 3.7235 -4.2591 3.4266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242178524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = 60.217870 kcal Electronic energy + Delta-G solvation = -22298.695593 eV Core-core repulsion = 19270.948546 eV Total energy + Delta-G solvation = -3027.747047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.53793 -38.25260 -35.92830 -34.17547 -32.31175 -31.48331 -29.60605 -28.98145 -27.87997 -27.17558 -24.52005 -23.86710 -22.48927 -21.45707 -20.24922 -19.91775 -17.46602 -16.61982 -15.76652 -15.48361 -14.99042 -14.67513 -14.40262 -14.05377 -13.56510 -13.51315 -13.36794 -13.02732 -12.90887 -12.21837 -12.13514 -11.98044 -11.86268 -11.69564 -11.61869 -11.44822 -11.27727 -11.09853 -10.89022 -10.80123 -10.53041 -10.22273 -9.90293 -9.46787 -8.58568 -8.20246 -8.11524 -7.98293 -7.80605 -7.34960 -7.08357 -4.54218 1.77673 1.97842 2.50813 2.78415 3.01108 3.11893 3.22122 3.85146 4.35205 4.40324 4.50867 5.32542 5.35515 5.42715 5.55150 5.59981 5.63216 5.77909 5.85218 5.88868 5.91085 6.00553 6.15088 6.22158 6.24396 6.26111 6.35824 6.37663 6.45995 6.50024 6.64930 6.69791 6.90461 6.95754 7.04076 7.17297 7.26093 7.41036 7.45183 7.49826 7.69559 7.84750 8.06515 8.21172 8.46630 8.62110 9.54641 9.91542 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.008306 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.996355 B = 3370.196780 C = 4687.345857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 C -0.117 4.117 4 C -0.213 4.213 5 C 0.059 3.941 6 C -0.423 4.423 7 H 0.099 0.901 8 C 0.084 3.916 9 N -0.794 5.794 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.247 1.247 14 C 0.057 3.943 15 C 0.040 3.960 16 C -0.084 4.084 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.159 4.159 20 C 0.094 3.906 21 N -0.487 5.487 22 C 0.041 3.959 23 C 0.033 3.967 24 N -0.412 5.412 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.288 0.712 31 H 0.131 0.869 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.017 0.983 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -5.992 0.895 8.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.238 4.238 5 C 0.054 3.946 6 C -0.452 4.452 7 H 0.117 0.883 8 C -0.137 4.137 9 N -0.417 5.417 10 Si 0.737 3.263 11 H -0.194 1.194 12 H -0.216 1.216 13 H -0.170 1.170 14 C -0.085 4.085 15 C 0.039 3.961 16 C -0.103 4.103 17 C -0.147 4.147 18 C -0.148 4.148 19 C -0.180 4.180 20 C -0.001 4.001 21 N -0.207 5.207 22 C -0.106 4.106 23 C -0.114 4.114 24 N -0.119 5.119 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.793 -6.158 0.817 8.493 hybrid contribution 0.754 0.741 -0.158 1.069 sum -5.038 -5.417 0.658 7.427 Atomic orbital electron populations 1.20252 0.91410 1.00927 1.00330 1.20257 0.94987 0.88337 1.12015 1.21158 0.94769 0.97574 1.00177 1.21138 0.94075 0.97505 1.11083 1.18442 0.94329 0.91105 0.90699 1.19432 0.89536 1.05928 1.30276 0.88314 1.26212 0.94759 0.96553 0.96198 1.69664 1.08937 1.28404 1.34707 0.86374 0.79588 0.80391 0.79981 1.19370 1.21589 1.16995 1.19194 0.88219 0.90514 1.10548 1.18362 0.93670 0.91283 0.92816 1.21329 0.94772 0.96158 0.98033 1.20972 1.00353 0.93859 0.99558 1.20832 0.98277 0.98921 0.96738 1.21371 0.98698 0.97456 1.00436 1.18749 0.93819 0.92501 0.95027 1.59119 1.08208 1.50841 1.02494 1.22305 0.93502 0.91956 1.02833 1.22394 1.00125 0.99935 0.88973 1.66959 1.09295 1.28451 1.07187 0.93351 0.92378 0.93065 0.88190 0.87244 0.90159 0.85114 0.86650 0.87182 0.87358 0.96429 0.91911 0.91034 0.91332 0.91721 0.96068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.15 36.01 0.37 -0.87 16 2 C -0.02 -0.37 6.79 -82.40 -0.56 -0.93 16 3 C -0.12 -2.55 9.64 -39.84 -0.38 -2.94 16 4 C -0.21 -5.08 7.31 -38.98 -0.29 -5.37 16 5 C 0.06 1.48 5.13 -106.40 -0.55 0.94 16 6 C -0.42 -10.87 7.55 -37.93 -0.29 -11.16 16 7 H 0.10 2.70 6.95 -52.48 -0.36 2.33 16 8 C 0.08 2.08 5.43 -17.32 -0.09 1.98 16 9 N -0.79 -20.07 13.93 55.55 0.77 -19.29 16 10 Si 0.91 20.01 24.53 -169.99 -4.17 15.84 16 11 H -0.27 -5.73 6.46 56.52 0.37 -5.36 16 12 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.25 -5.63 7.00 56.52 0.40 -5.23 16 14 C 0.06 1.37 6.04 -82.27 -0.50 0.87 16 15 C 0.04 0.89 5.09 -104.72 -0.53 0.36 16 16 C -0.08 -1.72 8.04 -39.19 -0.31 -2.03 16 17 C -0.13 -2.26 10.02 -39.61 -0.40 -2.65 16 18 C -0.13 -2.09 10.03 -39.51 -0.40 -2.48 16 19 C -0.16 -2.72 8.55 -39.42 -0.34 -3.06 16 20 C 0.09 1.84 4.71 -83.52 -0.39 1.45 16 21 N -0.49 -8.98 3.86 -186.58 -0.72 -9.70 16 22 C 0.04 0.64 9.34 60.06 0.56 1.20 16 23 C 0.03 0.53 9.38 60.07 0.56 1.09 16 24 N -0.41 -9.61 9.52 -5.47 -0.05 -9.66 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.11 2.56 4.51 -52.48 -0.24 2.33 16 30 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 31 H 0.13 2.78 7.28 -52.48 -0.38 2.40 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.62 7.01 -52.49 -0.37 1.25 16 35 H 0.02 0.24 7.11 -51.93 -0.37 -0.13 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 40 H 0.02 0.30 7.33 -51.93 -0.38 -0.08 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -27.60 325.15 -8.30 -35.90 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.50 Total: 5.61 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.53 Total: -23.60 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.00 Total: -38.65 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.60 -8.30 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242178524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.123 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds