Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 O 1.42901 * 109.47007 * 120.00136 * 2 1 3 5 5 C 1.35783 * 117.00004 * 84.05705 * 4 2 1 6 6 C 1.38567 * 120.13840 * 2.56884 * 5 4 2 7 7 C 1.38189 * 120.08463 * 179.97438 * 6 5 4 8 8 C 1.38506 * 120.36635 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.27707 * 359.73474 * 8 7 6 10 10 C 1.39619 * 119.90734 * 0.54176 * 9 8 7 11 11 C 1.47848 * 120.17665 * 179.74486 * 10 9 8 12 12 C 1.40000 * 119.88945 * 309.71377 * 11 10 9 13 13 C 1.36211 * 120.11713 * 180.02562 * 12 11 10 14 14 C 1.40953 * 119.88570 * 0.25513 * 13 12 11 15 15 C 1.40990 * 120.11580 * 179.75024 * 14 13 12 16 16 H 1.08000 * 120.00020 * 29.54097 * 15 14 13 17 17 C 1.39985 * 119.99932 * 209.53891 * 15 14 13 18 18 N 1.30806 * 119.99863 * 10.51542 * 17 15 14 19 19 Si 1.86804 * 119.99895 * 190.51616 * 17 15 14 20 20 H 1.48493 * 109.47238 * 89.99640 * 19 17 15 21 21 H 1.48500 * 109.46950 * 210.00122 * 19 17 15 22 22 H 1.48505 * 109.46910 * 329.99788 * 19 17 15 23 23 C 1.40957 * 119.77148 * 359.45269 * 14 13 12 24 24 C 1.36211 * 119.88239 * 0.56885 * 23 14 13 25 25 H 1.08997 * 109.47531 * 59.99396 * 1 2 3 26 26 H 1.08997 * 109.47709 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.46813 * 300.00262 * 1 2 3 28 28 H 1.08994 * 109.46677 * 239.99831 * 2 1 3 29 29 H 1.08997 * 109.47094 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46903 * 299.99895 * 3 2 1 31 31 H 1.09000 * 109.46981 * 60.00399 * 3 2 1 32 32 H 1.07994 * 119.96006 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.81899 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.86572 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.04681 * 180.25791 * 9 8 7 36 36 H 1.08004 * 119.94342 * 0.03098 * 12 11 10 37 37 H 1.08006 * 120.05986 * 179.97438 * 13 12 11 38 38 H 0.97005 * 120.00000 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.05879 * 180.27640 * 23 14 13 40 40 H 1.08003 * 119.94469 * 179.72376 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0937 -2.0273 1.1046 6 6 1.7802 -2.6914 -0.0705 7 6 1.8700 -4.0690 -0.1327 8 6 2.2735 -4.7951 0.9756 9 6 2.5947 -4.1492 2.1506 10 6 2.5024 -2.7582 2.2280 11 6 2.8400 -2.0600 3.4867 12 6 2.2738 -2.4857 4.6942 13 6 2.5812 -1.8455 5.8565 14 6 3.4669 -0.7491 5.8414 15 6 3.7843 -0.0795 7.0409 16 1 3.7766 -0.6169 7.9777 17 6 4.1096 1.2818 7.0176 18 7 3.9220 1.9805 5.9277 19 14 4.8115 2.1007 8.5428 20 1 6.2929 2.0008 8.5210 21 1 4.4120 3.5307 8.5652 22 1 4.2874 1.4213 9.7549 23 6 4.0391 -0.3283 4.6239 24 6 3.7248 -0.9751 3.4670 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8932 -0.5138 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.4653 -2.1318 -0.9388 33 1 1.6243 -4.5822 -1.0506 34 1 2.3412 -5.8714 0.9178 35 1 2.9128 -4.7188 3.0112 36 1 1.5921 -3.3234 4.7043 37 1 2.1435 -2.1744 6.7875 38 1 4.1477 2.9238 5.9115 39 1 4.7218 0.5085 4.6076 40 1 4.1592 -0.6507 2.5329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242223345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = -6.792491 kcal Electronic energy + Delta-G solvation = -21460.013984 eV Core-core repulsion = 18397.068398 eV Total energy + Delta-G solvation = -3062.945586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91403 -37.68978 -36.88208 -33.82303 -32.95059 -31.29043 -29.73002 -29.28856 -28.39908 -27.14526 -25.08908 -23.09967 -22.04584 -20.85228 -20.28997 -19.91386 -17.81946 -17.27742 -15.83776 -15.49619 -15.18159 -15.07717 -14.36104 -14.13646 -13.78274 -13.53153 -13.28855 -12.90473 -12.60586 -12.43907 -12.16724 -12.10925 -11.92634 -11.75663 -11.68392 -11.43720 -11.15812 -11.09756 -10.97358 -10.74055 -10.49755 -10.34467 -10.14008 -9.60328 -9.38359 -9.24277 -8.46983 -7.80608 -7.46630 -6.96949 -6.71316 -4.33819 1.67147 1.86942 2.81097 3.07315 3.10756 3.18893 3.21842 3.60249 3.93524 4.22464 4.69067 4.87739 5.03043 5.09881 5.22396 5.30903 5.44139 5.59714 5.68750 5.71567 5.79589 5.82160 5.88094 5.94103 6.15436 6.24227 6.29117 6.29380 6.42936 6.50712 6.74160 6.79612 6.93797 7.02244 7.08760 7.23702 7.31852 7.40224 7.68463 7.86357 8.01305 8.08695 8.18818 8.31882 8.66407 8.89395 8.99877 10.21578 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.004881 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.717910 B = 5735.621117 C = 6860.732784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.288 6.288 5 C 0.125 3.875 6 C -0.213 4.213 7 C -0.109 4.109 8 C -0.158 4.158 9 C -0.093 4.093 10 C -0.020 4.020 11 C -0.184 4.184 12 C -0.072 4.072 13 C -0.226 4.226 14 C 0.117 3.883 15 C -0.459 4.459 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.795 5.795 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.164 4.164 24 C -0.063 4.063 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.280 0.720 39 H 0.118 0.882 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -3.677 -11.032 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.201 6.201 5 C 0.079 3.921 6 C -0.232 4.232 7 C -0.127 4.127 8 C -0.176 4.176 9 C -0.111 4.111 10 C -0.021 4.021 11 C -0.185 4.185 12 C -0.090 4.090 13 C -0.246 4.246 14 C 0.115 3.885 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.420 5.420 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.183 4.183 24 C -0.082 4.082 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.298 -3.271 -10.952 11.896 hybrid contribution 0.073 0.433 0.339 0.554 sum -3.225 -2.838 -10.613 11.450 Atomic orbital electron populations 1.22343 0.95580 1.02767 1.02787 1.22367 0.94046 0.93816 0.88025 1.21817 1.02175 0.93707 1.02763 1.86325 1.80207 1.15965 1.37623 1.19186 0.96463 0.82830 0.93620 1.21084 1.09232 0.95543 0.97354 1.20741 1.00635 0.93204 0.98150 1.20872 1.03781 0.99272 0.93699 1.21150 0.99328 0.92978 0.97657 1.18457 0.99400 0.91864 0.92337 1.17911 1.08173 1.02164 0.90272 1.20288 0.98388 0.97973 0.92355 1.20685 1.04603 1.03044 0.96238 1.17696 0.87695 0.89829 0.93308 1.19584 1.40503 0.94014 0.94751 0.90449 1.25926 0.93199 0.97780 0.97538 1.69808 1.35265 1.08801 1.28124 0.86268 0.79930 0.78384 0.81863 1.19315 1.20292 1.18642 1.20995 1.03297 1.01907 0.92133 1.20399 0.96846 0.94109 0.96829 0.91599 0.92119 0.91309 0.91501 0.91688 0.91149 0.91110 0.86122 0.86883 0.86762 0.85804 0.89460 0.88956 0.90916 0.86459 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.27 37.16 0.34 -1.87 16 2 C 0.07 1.04 2.86 -26.73 -0.08 0.96 16 3 C -0.15 -1.88 9.56 37.16 0.36 -1.53 16 4 O -0.29 -5.42 8.14 -19.06 -0.16 -5.57 16 5 C 0.12 2.31 6.47 -38.75 -0.25 2.06 16 6 C -0.21 -3.28 8.37 -39.48 -0.33 -3.61 16 7 C -0.11 -1.54 10.03 -39.50 -0.40 -1.94 16 8 C -0.16 -2.33 10.03 -39.62 -0.40 -2.73 16 9 C -0.09 -1.61 9.51 -39.20 -0.37 -1.98 16 10 C -0.02 -0.40 5.48 -104.74 -0.57 -0.97 16 11 C -0.18 -4.25 5.30 -104.64 -0.55 -4.81 16 12 C -0.07 -1.66 9.44 -39.65 -0.37 -2.04 16 13 C -0.23 -5.65 9.73 -39.28 -0.38 -6.03 16 14 C 0.12 3.16 5.54 -106.80 -0.59 2.57 16 15 C -0.46 -12.23 9.03 -37.89 -0.34 -12.58 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.84 5.25 -17.33 -0.09 1.75 16 18 N -0.79 -20.71 10.88 55.55 0.60 -20.11 16 19 Si 0.91 18.74 29.57 -169.99 -5.03 13.71 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.16 -4.35 8.58 -39.28 -0.34 -4.69 16 24 C -0.06 -1.55 8.71 -39.65 -0.35 -1.90 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 27 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 28 H 0.07 0.84 5.97 -51.93 -0.31 0.52 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.12 1.56 5.68 -52.49 -0.30 1.27 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 36 H 0.09 1.81 8.04 -52.48 -0.42 1.38 16 37 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.12 3.21 6.28 -52.48 -0.33 2.88 16 40 H 0.09 2.05 7.67 -52.48 -0.40 1.65 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -28.59 333.20 -9.77 -38.36 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.50 Total: 7.92 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: -4.72 Total: -39.32 kcal Atomic # 7 Polarization: -20.71 SS G_CDS: 0.60 Total: -20.11 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.16 Total: -5.57 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.59 -9.77 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242223345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.563 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds