Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37838 * 119.97759 * 2 1 4 4 C 1.39426 * 119.94946 * 179.97438 * 3 2 1 5 5 C 1.48277 * 120.04703 * 180.02562 * 4 3 2 6 6 C 1.38966 * 119.62141 * 179.97438 * 5 4 3 7 7 C 1.40815 * 118.75764 * 180.02562 * 6 5 4 8 8 C 1.41527 * 120.98281 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00069 * 336.11980 * 8 7 6 10 10 C 1.40046 * 120.00037 * 156.11814 * 8 7 6 11 11 N 1.30729 * 120.00085 * 343.16649 * 10 8 7 12 12 Si 1.86806 * 119.99831 * 163.15632 * 10 8 7 13 13 H 1.48498 * 109.47275 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46720 * 120.00403 * 12 10 8 15 15 H 1.48504 * 109.47092 * 240.00266 * 12 10 8 16 16 C 1.41162 * 118.03429 * 359.97438 * 7 6 5 17 17 C 1.37714 * 119.08284 * 0.02562 * 16 7 6 18 18 N 1.31937 * 121.16407 * 359.72153 * 17 16 7 19 19 C 1.39461 * 119.91034 * 0.02562 * 4 3 2 20 20 C 1.37804 * 119.95067 * 359.72271 * 19 4 3 21 21 C 1.39034 * 119.97232 * 179.97438 * 2 1 3 22 22 N 1.39466 * 119.95627 * 359.97438 * 21 2 1 23 23 C 1.46900 * 110.99871 * 239.99938 * 22 21 2 24 24 C 1.46900 * 111.00218 * 116.04207 * 22 21 2 25 25 H 1.08993 * 109.47277 * 270.02582 * 1 2 3 26 26 H 1.09002 * 109.46814 * 30.02448 * 1 2 3 27 27 H 1.09000 * 109.47262 * 150.02202 * 1 2 3 28 28 H 1.07994 * 120.02558 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.62148 * 359.97438 * 6 5 4 30 30 H 0.97001 * 120.00437 * 180.02562 * 11 10 8 31 31 H 1.07994 * 120.46198 * 179.97438 * 16 7 6 32 32 H 1.07997 * 119.41443 * 179.97438 * 17 16 7 33 33 H 1.08005 * 120.03012 * 179.97438 * 19 4 3 34 34 H 1.07994 * 119.97804 * 180.29867 * 20 19 4 35 35 H 1.09001 * 109.47142 * 60.00195 * 23 22 21 36 36 H 1.08997 * 109.46865 * 299.99356 * 23 22 21 37 37 H 1.08999 * 109.47082 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.47010 * 183.95437 * 24 22 21 39 39 H 1.08996 * 109.47463 * 303.95336 * 24 22 21 40 40 H 1.08999 * 109.46796 * 63.95577 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1940 0.0000 4 6 3.5900 1.1933 0.0005 5 6 4.3331 2.4764 0.0011 6 6 5.7227 2.4654 0.0022 7 6 6.4099 3.6945 0.0033 8 6 7.8245 3.7383 0.0049 9 1 8.3902 2.9001 0.3840 10 6 8.4907 4.8685 -0.4850 11 7 7.8530 5.7296 -1.2339 12 14 10.2905 5.1456 -0.0683 13 1 10.7773 4.0340 0.7876 14 1 11.0872 5.1910 -1.3206 15 1 10.4377 6.4320 0.6591 16 6 5.6462 4.8817 0.0027 17 6 4.2719 4.7935 0.0016 18 7 3.6628 3.6231 -0.0044 19 6 4.2848 -0.0159 0.0005 20 6 3.5923 -1.2073 0.0058 21 6 2.2016 -1.2044 0.0005 22 7 1.5028 -2.4113 0.0016 23 6 1.8329 -3.2097 1.1897 24 6 1.7595 -3.1695 -1.2301 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6558 2.1293 -0.0004 29 1 6.2654 1.5317 0.0030 30 1 8.3145 6.5123 -1.5736 31 1 6.1328 5.8458 0.0039 32 1 3.6823 5.6984 0.0015 33 1 5.3649 -0.0187 0.0005 34 1 4.1299 -2.1439 0.0107 35 1 1.5678 -2.6516 2.0877 36 1 2.9014 -3.4246 1.1976 37 1 1.2740 -4.1452 1.1656 38 1 1.1488 -4.0724 -1.2350 39 1 1.5067 -2.5552 -2.0943 40 1 2.8136 -3.4435 -1.2750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242240776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = 51.139962 kcal Electronic energy + Delta-G solvation = -20929.790084 eV Core-core repulsion = 17901.649389 eV Total energy + Delta-G solvation = -3028.140695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.83449 -38.32937 -36.25675 -34.16795 -32.64685 -30.92392 -30.63525 -28.14039 -27.64176 -26.71316 -25.93171 -24.29078 -22.22316 -21.59946 -20.71616 -19.74429 -17.49034 -16.62822 -15.78838 -15.45787 -15.05624 -14.91118 -14.51251 -14.20726 -13.85100 -13.52307 -13.25823 -13.22104 -12.72886 -12.60441 -12.49426 -12.45195 -12.10901 -11.88920 -11.78084 -11.57846 -11.35074 -11.29026 -11.04468 -10.88268 -10.73628 -10.30037 -9.89155 -9.49165 -8.70524 -8.49901 -8.32403 -8.11821 -8.03433 -7.15966 -6.90254 -4.65843 1.36330 1.79449 2.68912 2.84626 2.98948 3.04215 3.18899 3.80707 3.92287 4.14791 4.65487 5.07665 5.12472 5.20543 5.24628 5.25654 5.40665 5.43472 5.63502 5.71766 5.75771 5.78631 5.78957 5.93199 5.97208 6.01277 6.07711 6.29836 6.50074 6.58838 6.63697 6.81088 6.83774 6.84818 6.86811 7.05142 7.17546 7.19114 7.29901 7.42697 7.60762 7.79174 8.04099 8.38616 8.66564 8.68071 9.51252 10.00869 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.003640 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.082433 B = 7691.224222 C = 8417.717738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.070 4.070 3 C -0.089 4.089 4 C -0.008 4.008 5 C 0.150 3.850 6 C -0.251 4.251 7 C 0.126 3.874 8 C -0.456 4.456 9 H 0.082 0.918 10 C 0.078 3.922 11 N -0.785 5.785 12 Si 0.912 3.088 13 H -0.259 1.259 14 H -0.273 1.273 15 H -0.270 1.270 16 C -0.208 4.208 17 C 0.087 3.913 18 N -0.562 5.562 19 C -0.108 4.108 20 C -0.148 4.148 21 C 0.065 3.935 22 N -0.505 5.505 23 C 0.029 3.971 24 C 0.028 3.972 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.283 0.717 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 -11.202 1.579 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 C -0.108 4.108 4 C -0.009 4.009 5 C 0.016 3.984 6 C -0.274 4.274 7 C 0.118 3.882 8 C -0.487 4.487 9 H 0.100 0.900 10 C -0.142 4.142 11 N -0.410 5.410 12 Si 0.736 3.264 13 H -0.182 1.182 14 H -0.198 1.198 15 H -0.195 1.195 16 C -0.231 4.231 17 C -0.065 4.065 18 N -0.276 5.276 19 C -0.127 4.127 20 C -0.168 4.168 21 C -0.028 4.028 22 N -0.225 5.225 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.856 -10.897 1.447 14.116 hybrid contribution 2.862 0.100 0.020 2.864 sum -5.994 -10.797 1.467 12.436 Atomic orbital electron populations 1.20584 0.91022 1.02227 1.01802 1.19703 0.96148 0.91283 0.99972 1.21184 0.93507 0.97480 0.98604 1.18849 0.92857 0.91770 0.97450 1.19122 0.90085 0.90433 0.98757 1.21882 0.93309 0.97966 1.14224 1.17772 0.93671 0.90476 0.86299 1.19635 0.91115 1.01687 1.36249 0.89975 1.25974 1.01186 0.94754 0.92288 1.69767 1.38836 1.10110 1.22291 0.86199 0.81363 0.79507 0.79359 1.18240 1.19798 1.19498 1.22269 0.93409 0.99939 1.07439 1.21962 0.92604 0.94000 0.97981 1.67277 1.40577 0.97525 1.22262 1.21129 1.00142 0.91233 1.00206 1.21342 0.94296 0.97882 1.03309 1.18525 0.90081 0.90298 1.03945 1.59503 1.56762 1.03351 1.02919 1.22420 0.99071 0.97470 0.92864 1.22426 0.99419 0.97975 0.92039 0.91893 0.92344 0.90929 0.84685 0.87777 0.90551 0.85542 0.85957 0.85638 0.86861 0.91247 0.95220 0.91377 0.91341 0.91232 0.95289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.76 36.01 0.35 -0.93 16 2 C -0.07 -1.11 5.89 -104.47 -0.62 -1.72 16 3 C -0.09 -1.62 9.21 -39.29 -0.36 -1.98 16 4 C -0.01 -0.17 5.88 -104.87 -0.62 -0.79 16 5 C 0.15 3.53 6.73 -83.04 -0.56 2.97 16 6 C -0.25 -6.14 9.25 -38.34 -0.35 -6.50 16 7 C 0.13 3.30 5.60 -106.56 -0.60 2.71 16 8 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 9 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 10 C 0.08 1.88 5.20 -17.34 -0.09 1.79 16 11 N -0.78 -19.56 10.92 55.55 0.61 -18.95 16 12 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 13 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 14 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 C -0.21 -5.33 8.79 -38.66 -0.34 -5.67 16 17 C 0.09 2.07 11.15 -17.70 -0.20 1.88 16 18 N -0.56 -13.55 9.39 -9.95 -0.09 -13.64 16 19 C -0.11 -1.91 9.40 -39.28 -0.37 -2.28 16 20 C -0.15 -2.28 8.59 -39.43 -0.34 -2.61 16 21 C 0.07 0.97 4.70 -83.78 -0.39 0.58 16 22 N -0.50 -6.24 3.92 -186.83 -0.73 -6.97 16 23 C 0.03 0.30 9.34 60.06 0.56 0.86 16 24 C 0.03 0.30 9.33 60.06 0.56 0.86 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 28 H 0.14 2.52 7.52 -52.49 -0.39 2.12 16 29 H 0.10 2.35 6.17 -52.49 -0.32 2.02 16 30 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 31 H 0.13 3.27 6.20 -52.49 -0.33 2.94 16 32 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 33 H 0.13 2.17 6.17 -52.48 -0.32 1.84 16 34 H 0.11 1.51 7.02 -52.49 -0.37 1.14 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.31 7.09 -51.93 -0.37 -0.06 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.03 0.30 7.47 -51.93 -0.39 -0.09 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -27.81 331.19 -9.34 -37.15 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.38 Total: 7.45 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -3.70 Total: -22.92 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.22 Total: -39.56 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.81 -9.34 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242240776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.293 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds