Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37838 * 119.97759 * 2 1 4 4 C 1.39426 * 119.94946 * 179.97438 * 3 2 1 5 5 C 1.48277 * 120.04703 * 180.02562 * 4 3 2 6 6 C 1.38966 * 119.62141 * 179.97438 * 5 4 3 7 7 C 1.40815 * 118.75764 * 180.02562 * 6 5 4 8 8 C 1.41527 * 120.98281 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00069 * 336.11980 * 8 7 6 10 10 C 1.40046 * 120.00037 * 156.11814 * 8 7 6 11 11 N 1.30729 * 120.00085 * 343.16649 * 10 8 7 12 12 Si 1.86806 * 119.99831 * 163.15632 * 10 8 7 13 13 H 1.48498 * 109.47275 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46720 * 120.00403 * 12 10 8 15 15 H 1.48504 * 109.47092 * 240.00266 * 12 10 8 16 16 C 1.41162 * 118.03429 * 359.97438 * 7 6 5 17 17 C 1.37714 * 119.08284 * 0.02562 * 16 7 6 18 18 N 1.31937 * 121.16407 * 359.72153 * 17 16 7 19 19 C 1.39461 * 119.91034 * 0.02562 * 4 3 2 20 20 C 1.37804 * 119.95067 * 359.72271 * 19 4 3 21 21 C 1.39034 * 119.97232 * 179.97438 * 2 1 3 22 22 N 1.39466 * 119.95627 * 359.97438 * 21 2 1 23 23 C 1.46900 * 110.99871 * 239.99938 * 22 21 2 24 24 C 1.46900 * 111.00218 * 116.04207 * 22 21 2 25 25 H 1.08993 * 109.47277 * 270.02582 * 1 2 3 26 26 H 1.09002 * 109.46814 * 30.02448 * 1 2 3 27 27 H 1.09000 * 109.47262 * 150.02202 * 1 2 3 28 28 H 1.07994 * 120.02558 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.62148 * 359.97438 * 6 5 4 30 30 H 0.97001 * 120.00437 * 180.02562 * 11 10 8 31 31 H 1.07994 * 120.46198 * 179.97438 * 16 7 6 32 32 H 1.07997 * 119.41443 * 179.97438 * 17 16 7 33 33 H 1.08005 * 120.03012 * 179.97438 * 19 4 3 34 34 H 1.07994 * 119.97804 * 180.29867 * 20 19 4 35 35 H 1.09001 * 109.47142 * 60.00195 * 23 22 21 36 36 H 1.08997 * 109.46865 * 299.99356 * 23 22 21 37 37 H 1.08999 * 109.47082 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.47010 * 183.95437 * 24 22 21 39 39 H 1.08996 * 109.47463 * 303.95336 * 24 22 21 40 40 H 1.08999 * 109.46796 * 63.95577 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1940 0.0000 4 6 3.5900 1.1933 0.0005 5 6 4.3331 2.4764 0.0011 6 6 5.7227 2.4654 0.0022 7 6 6.4099 3.6945 0.0033 8 6 7.8245 3.7383 0.0049 9 1 8.3902 2.9001 0.3840 10 6 8.4907 4.8685 -0.4850 11 7 7.8530 5.7296 -1.2339 12 14 10.2905 5.1456 -0.0683 13 1 10.7773 4.0340 0.7876 14 1 11.0872 5.1910 -1.3206 15 1 10.4377 6.4320 0.6591 16 6 5.6462 4.8817 0.0027 17 6 4.2719 4.7935 0.0016 18 7 3.6628 3.6231 -0.0044 19 6 4.2848 -0.0159 0.0005 20 6 3.5923 -1.2073 0.0058 21 6 2.2016 -1.2044 0.0005 22 7 1.5028 -2.4113 0.0016 23 6 1.8329 -3.2097 1.1897 24 6 1.7595 -3.1695 -1.2301 25 1 -0.3633 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6558 2.1293 -0.0004 29 1 6.2654 1.5317 0.0030 30 1 8.3145 6.5123 -1.5736 31 1 6.1328 5.8458 0.0039 32 1 3.6823 5.6984 0.0015 33 1 5.3649 -0.0187 0.0005 34 1 4.1299 -2.1439 0.0107 35 1 1.5678 -2.6516 2.0877 36 1 2.9014 -3.4246 1.1976 37 1 1.2740 -4.1452 1.1656 38 1 1.1488 -4.0724 -1.2350 39 1 1.5067 -2.5552 -2.0943 40 1 2.8136 -3.4435 -1.2750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242240776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = 37.664737 kcal Electronic energy + Delta-G solvation = -20930.374414 eV Core-core repulsion = 17901.649389 eV Total energy + Delta-G solvation = -3028.725024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13828 -40.03268 -37.48234 -35.99971 -33.95234 -32.72482 -32.22948 -29.66150 -28.45173 -28.16467 -27.52811 -25.55533 -23.89629 -23.07405 -22.21314 -21.23239 -19.26213 -17.88267 -17.38622 -16.92766 -16.45104 -16.20687 -15.98548 -15.80616 -15.27862 -14.89169 -14.64257 -14.52390 -14.33663 -14.06951 -13.90783 -13.39277 -13.26564 -13.23032 -12.98962 -12.89450 -12.76387 -12.65159 -12.55898 -12.22584 -12.10111 -11.92582 -11.71740 -11.28967 -10.24685 -10.04440 -9.93548 -9.64821 -9.44665 -8.84668 -8.71049 -6.61437 -0.10793 0.47204 0.87591 1.14830 1.37197 1.52316 1.54547 2.15859 2.60414 2.92029 2.94695 3.57204 3.73283 3.91084 3.98083 4.22903 4.28209 4.42339 4.45253 4.46995 4.60405 4.67193 4.77880 4.81547 4.87986 4.91579 4.93775 4.95183 5.01182 5.02288 5.06045 5.18118 5.23476 5.41970 5.43971 5.48885 5.58381 5.78495 5.86855 5.90245 5.97203 6.15193 6.44360 6.47350 6.74751 6.75901 7.63021 8.20734 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.003640 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.082433 B = 7691.224222 C = 8417.717738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.046 4.046 5 C 0.150 3.850 6 C -0.274 4.274 7 C 0.099 3.901 8 C -0.487 4.487 9 H 0.083 0.917 10 C 0.038 3.962 11 N -0.813 5.813 12 Si 0.989 3.011 13 H -0.257 1.257 14 H -0.263 1.263 15 H -0.261 1.261 16 C -0.234 4.234 17 C 0.085 3.915 18 N -0.572 5.572 19 C -0.112 4.112 20 C -0.143 4.143 21 C 0.082 3.918 22 N -0.510 5.510 23 C 0.027 3.973 24 C 0.027 3.973 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.294 0.706 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 -13.284 1.728 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.113 4.113 4 C -0.046 4.046 5 C 0.017 3.983 6 C -0.297 4.297 7 C 0.092 3.908 8 C -0.518 4.518 9 H 0.101 0.899 10 C -0.179 4.179 11 N -0.438 5.438 12 Si 0.809 3.191 13 H -0.180 1.180 14 H -0.188 1.188 15 H -0.186 1.186 16 C -0.256 4.256 17 C -0.067 4.067 18 N -0.287 5.287 19 C -0.131 4.131 20 C -0.163 4.163 21 C -0.013 4.013 22 N -0.231 5.231 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.167 0.833 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.301 -12.994 1.592 16.058 hybrid contribution 2.848 0.596 -0.051 2.910 sum -6.453 -12.398 1.541 14.061 Atomic orbital electron populations 1.20601 0.88781 1.03002 1.02698 1.19998 0.97762 0.90699 0.99068 1.21153 0.92811 0.98260 0.99101 1.18836 0.93692 0.90980 1.01133 1.19659 0.90263 0.91729 0.96671 1.22053 0.94063 0.97935 1.15621 1.18172 0.94549 0.91391 0.86714 1.19924 0.91324 1.02976 1.37539 0.89885 1.26880 1.05867 0.93775 0.91387 1.69807 1.40975 1.10602 1.22464 0.85053 0.75201 0.79526 0.79323 1.17994 1.18793 1.18582 1.22249 0.94178 0.99441 1.09763 1.22373 0.92430 0.95102 0.96796 1.67406 1.40570 0.97781 1.22962 1.21178 1.00197 0.91423 1.00312 1.21575 0.94760 0.97834 1.02165 1.18751 0.89992 0.91414 1.01105 1.59587 1.56217 1.02912 1.04408 1.22508 0.99722 0.98102 0.91649 1.22509 1.00217 0.98523 0.90739 0.90814 0.91877 0.89835 0.85719 0.86835 0.89529 0.86472 0.83323 0.85859 0.84356 0.91820 0.94950 0.88808 0.88761 0.91939 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.22 9.76 71.24 0.70 -1.52 16 2 C -0.07 -2.24 5.89 -19.77 -0.12 -2.36 16 3 C -0.09 -3.46 9.21 22.46 0.21 -3.25 16 4 C -0.05 -1.87 5.88 -20.03 -0.12 -1.99 16 5 C 0.15 7.34 6.73 41.84 0.28 7.62 16 6 C -0.27 -14.04 9.25 23.08 0.21 -13.82 16 7 C 0.10 5.46 5.60 -21.12 -0.12 5.35 16 8 C -0.49 -25.92 9.12 23.52 0.21 -25.71 16 9 H 0.08 4.23 7.90 -2.91 -0.02 4.20 16 10 C 0.04 1.87 5.20 85.30 0.44 2.32 16 11 N -0.81 -41.35 10.92 21.84 0.24 -41.11 16 12 Si 0.99 36.71 29.59 68.60 2.03 38.74 16 13 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 14 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 15 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 16 C -0.23 -12.50 8.79 22.86 0.20 -12.30 16 17 C 0.09 4.20 11.15 84.55 0.94 5.14 16 18 N -0.57 -28.45 9.39 -185.39 -1.74 -30.19 16 19 C -0.11 -3.96 9.40 22.46 0.21 -3.75 16 20 C -0.14 -4.14 8.59 22.37 0.19 -3.95 16 21 C 0.08 2.25 4.70 38.32 0.18 2.43 16 22 N -0.51 -10.89 3.92 -745.02 -2.92 -13.81 16 23 C 0.03 0.46 9.34 127.69 1.19 1.65 16 24 C 0.03 0.46 9.33 127.69 1.19 1.65 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 27 H 0.08 1.79 7.45 -2.39 -0.02 1.77 16 28 H 0.12 4.75 7.52 -2.91 -0.02 4.73 16 29 H 0.11 5.38 6.17 -2.91 -0.02 5.36 16 30 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 31 H 0.12 6.35 6.20 -2.91 -0.02 6.33 16 32 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 33 H 0.12 4.33 6.17 -2.91 -0.02 4.31 16 34 H 0.14 3.28 7.02 -2.91 -0.02 3.26 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.03 0.55 7.09 -2.39 -0.02 0.53 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 40 H 0.03 0.55 7.47 -2.39 -0.02 0.53 16 Total: -1.00 -61.67 331.19 4.46 -57.21 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 1.04 Total: 31.66 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 5.81 Total: -42.49 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -4.42 Total: -85.12 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -61.67 4.46 -57.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242240776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.873 kcal (2) G-P(sol) polarization free energy of solvation -61.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds