Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47253 * 2 1 4 4 O 1.42905 * 109.47125 * 240.00084 * 2 1 3 5 5 C 1.50700 * 109.47007 * 120.00334 * 2 1 3 6 6 C 1.38337 * 119.94085 * 84.97842 * 5 2 1 7 7 C 1.38304 * 120.24718 * 180.02562 * 6 5 2 8 8 C 1.38047 * 120.11712 * 359.67485 * 7 6 5 9 9 C 1.39315 * 119.87173 * 0.61912 * 8 7 6 10 10 C 1.48394 * 120.11684 * 179.67577 * 9 8 7 11 11 C 1.39357 * 120.12328 * 179.70538 * 10 9 8 12 12 C 1.37993 * 119.88065 * 180.02562 * 11 10 9 13 13 C 1.38343 * 120.12209 * 0.02562 * 12 11 10 14 14 C 1.38301 * 120.24329 * 359.71611 * 13 12 11 15 15 C 1.50698 * 119.94534 * 180.28010 * 14 13 12 16 16 C 1.50700 * 109.47192 * 270.28157 * 15 14 13 17 17 H 1.08001 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99459 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00470 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46842 * 59.99875 * 20 18 16 22 22 H 1.48500 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46868 * 300.00129 * 20 18 16 24 24 C 1.38043 * 120.11839 * 0.56387 * 14 13 12 25 25 C 1.38003 * 119.93647 * 264.99649 * 5 2 1 26 26 H 1.08999 * 109.47210 * 299.99772 * 1 2 3 27 27 H 1.09005 * 109.46856 * 59.99846 * 1 2 3 28 28 H 1.08998 * 109.46803 * 179.97438 * 1 2 3 29 29 H 0.96698 * 113.99987 * 299.99993 * 4 2 1 30 30 H 1.08007 * 119.88097 * 359.97438 * 6 5 2 31 31 H 1.07993 * 119.94291 * 179.97438 * 7 6 5 32 32 H 1.07990 * 120.06249 * 180.29735 * 8 7 6 33 33 H 1.08000 * 120.06205 * 0.04643 * 11 10 9 34 34 H 1.08003 * 119.93975 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.88169 * 180.02562 * 13 12 11 36 36 H 1.09005 * 109.46617 * 30.27518 * 15 14 13 37 37 H 1.08998 * 109.47342 * 150.27768 * 15 14 13 38 38 H 0.97001 * 119.99412 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.06469 * 179.72168 * 24 14 13 40 40 H 1.07991 * 120.06065 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 2.1636 -2.0876 1.2273 7 6 2.6234 -2.7462 2.3532 8 6 2.9605 -2.0309 3.4848 9 6 2.8245 -0.6445 3.4954 10 6 3.1784 0.1291 4.7113 11 6 3.0482 1.5165 4.7201 12 6 3.3793 2.2310 5.8533 13 6 3.8403 1.5724 6.9792 14 6 3.9664 0.1952 6.9779 15 6 4.4633 -0.5159 8.2102 16 6 5.9654 -0.6240 8.1565 17 1 6.5063 -0.2180 7.3144 18 6 6.6494 -1.2402 9.1828 19 7 5.9909 -1.7333 10.2089 20 14 8.5114 -1.3749 9.1159 21 1 9.1042 -0.0146 9.0556 22 1 9.0011 -2.0743 10.3309 23 1 8.9091 -2.1420 7.9083 24 6 3.6436 -0.5289 5.8478 25 6 2.3602 0.0139 2.3584 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7211 -1.5952 -1.2330 30 1 1.9051 -2.6508 0.3427 31 1 2.7236 -3.8214 2.3455 32 1 3.3240 -2.5456 4.3618 33 1 2.6885 2.0317 3.8417 34 1 3.2783 3.3062 5.8613 35 1 4.0979 2.1354 7.8642 36 1 4.1710 0.0467 9.0969 37 1 4.0285 -1.5144 8.2537 38 1 6.4721 -2.1672 10.9308 39 1 3.7467 -1.6040 5.8463 40 1 2.2575 1.0889 2.3596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242547915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = -21.571887 kcal Electronic energy + Delta-G solvation = -20563.373789 eV Core-core repulsion = 17499.787321 eV Total energy + Delta-G solvation = -3063.586468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.98811 -38.56570 -36.99478 -33.65718 -32.51523 -32.09589 -31.08291 -29.60192 -28.53658 -27.03837 -24.22811 -23.60461 -22.73565 -22.10877 -20.42264 -19.61935 -17.70375 -16.48681 -16.31901 -15.95751 -15.51830 -15.21144 -14.68773 -14.55607 -14.09401 -13.78578 -13.67355 -13.55362 -13.02316 -12.82403 -12.57448 -12.32413 -12.25512 -11.96531 -11.59451 -11.36332 -11.31582 -11.19527 -10.99171 -10.72002 -10.58290 -10.29823 -10.28413 -9.66343 -9.49696 -9.27695 -8.80620 -8.45106 -8.01474 -7.61758 -6.07387 -4.11515 0.93593 1.35328 2.04780 2.27646 3.30439 3.34488 3.37970 3.74527 4.16902 4.38125 4.39749 4.57596 4.70813 4.80297 4.90549 4.97843 5.06932 5.27035 5.32720 5.35726 5.43781 5.49417 5.51328 5.64305 5.76208 5.85164 5.91095 6.01492 6.08399 6.17068 6.36049 6.47317 6.55443 6.58797 6.69498 6.93771 7.05470 7.11813 7.16858 7.31564 7.45497 7.64742 7.78934 7.88346 8.27898 8.93540 9.52617 11.02476 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.003466 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.315500 B = 8077.265546 C = 8659.932978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.106 0.894 4 O -0.558 6.558 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.021 4.021 10 C -0.063 4.063 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.117 4.117 14 C -0.033 4.033 15 C 0.048 3.952 16 C -0.514 4.514 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.107 4.107 25 C -0.108 4.108 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.373 0.627 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 2.090 -17.666 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.124 0.876 4 O -0.364 6.364 5 C -0.119 4.119 6 C -0.142 4.142 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.021 4.021 10 C -0.063 4.063 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.033 4.033 15 C 0.011 3.989 16 C -0.552 4.552 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.125 4.125 25 C -0.126 4.126 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.221 0.779 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.611 2.576 -17.604 20.716 hybrid contribution 0.841 -0.660 0.296 1.110 sum -9.770 1.916 -17.308 19.967 Atomic orbital electron populations 1.22484 0.95468 1.02849 1.02910 1.20791 0.92937 0.95969 0.81737 0.87608 1.86619 1.77376 1.29115 1.43321 1.20391 1.00937 0.94414 0.96141 1.20770 1.01537 0.93599 0.98267 1.21035 0.99088 0.99849 0.93033 1.21404 0.99381 0.93495 0.98750 1.18892 0.97215 0.93053 0.92960 1.18687 1.01728 0.93041 0.92816 1.20910 1.03207 0.93029 0.98185 1.20971 1.00452 0.99124 0.93560 1.21202 0.99502 0.94611 0.98156 1.20649 0.92032 0.93607 0.97043 1.18364 0.96059 0.95320 0.89170 1.21018 0.90803 1.37619 1.05739 0.92503 1.25007 0.98610 0.95331 0.95307 1.69950 1.35771 1.38377 1.09182 0.86593 0.85288 0.78381 0.77429 1.20133 1.21198 1.20126 1.21161 0.99330 0.99943 0.92098 1.20992 0.99767 0.99729 0.92149 0.91195 0.91566 0.92144 0.77907 0.86642 0.85874 0.85180 0.86922 0.86784 0.86276 0.95211 0.95302 0.92746 0.86121 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.52 37.16 0.35 -0.99 16 2 C 0.14 1.34 3.83 -27.88 -0.11 1.24 16 3 H 0.11 0.96 8.05 -51.93 -0.42 0.54 16 4 O -0.56 -5.42 13.14 -35.23 -0.46 -5.88 16 5 C -0.12 -1.33 5.00 -104.67 -0.52 -1.86 16 6 C -0.12 -1.33 9.32 -39.52 -0.37 -1.69 16 7 C -0.11 -1.33 10.03 -39.63 -0.40 -1.72 16 8 C -0.11 -1.60 9.43 -39.25 -0.37 -1.97 16 9 C -0.02 -0.32 5.88 -104.90 -0.62 -0.94 16 10 C -0.06 -1.08 5.88 -104.90 -0.62 -1.69 16 11 C -0.14 -2.14 9.43 -39.25 -0.37 -2.51 16 12 C -0.12 -2.01 10.03 -39.63 -0.40 -2.40 16 13 C -0.12 -2.24 9.69 -39.52 -0.38 -2.63 16 14 C -0.03 -0.72 5.06 -104.67 -0.53 -1.25 16 15 C 0.05 1.21 5.10 -29.04 -0.15 1.07 16 16 C -0.51 -14.30 9.09 -34.44 -0.31 -14.61 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.11 -2.10 9.08 -39.25 -0.36 -2.46 16 25 C -0.11 -1.40 9.06 -39.25 -0.36 -1.75 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.37 2.35 7.38 45.56 0.34 2.68 16 30 H 0.12 0.89 6.60 -52.48 -0.35 0.54 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.84 6.21 -52.49 -0.33 1.52 16 33 H 0.11 1.45 6.21 -52.49 -0.33 1.12 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.29 6.21 -52.49 -0.33 1.97 16 40 H 0.12 1.40 6.21 -52.49 -0.33 1.07 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -31.08 335.85 -9.93 -41.01 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.65 Total: 3.43 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -5.60 Total: -34.61 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.74 Total: -25.48 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.46 Total: -5.88 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.08 -9.93 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242547915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.436 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds