Wall clock time and date at job start Tue Mar 31 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47253 * 2 1 4 4 O 1.42905 * 109.47125 * 240.00084 * 2 1 3 5 5 C 1.50700 * 109.47007 * 120.00334 * 2 1 3 6 6 C 1.38337 * 119.94085 * 84.97842 * 5 2 1 7 7 C 1.38304 * 120.24718 * 180.02562 * 6 5 2 8 8 C 1.38047 * 120.11712 * 359.67485 * 7 6 5 9 9 C 1.39315 * 119.87173 * 0.61912 * 8 7 6 10 10 C 1.48394 * 120.11684 * 179.67577 * 9 8 7 11 11 C 1.39357 * 120.12328 * 179.70538 * 10 9 8 12 12 C 1.37993 * 119.88065 * 180.02562 * 11 10 9 13 13 C 1.38343 * 120.12209 * 0.02562 * 12 11 10 14 14 C 1.38301 * 120.24329 * 359.71611 * 13 12 11 15 15 C 1.50698 * 119.94534 * 180.28010 * 14 13 12 16 16 C 1.50700 * 109.47192 * 270.28157 * 15 14 13 17 17 H 1.08001 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99459 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00470 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46842 * 59.99875 * 20 18 16 22 22 H 1.48500 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46868 * 300.00129 * 20 18 16 24 24 C 1.38043 * 120.11839 * 0.56387 * 14 13 12 25 25 C 1.38003 * 119.93647 * 264.99649 * 5 2 1 26 26 H 1.08999 * 109.47210 * 299.99772 * 1 2 3 27 27 H 1.09005 * 109.46856 * 59.99846 * 1 2 3 28 28 H 1.08998 * 109.46803 * 179.97438 * 1 2 3 29 29 H 0.96698 * 113.99987 * 299.99993 * 4 2 1 30 30 H 1.08007 * 119.88097 * 359.97438 * 6 5 2 31 31 H 1.07993 * 119.94291 * 179.97438 * 7 6 5 32 32 H 1.07990 * 120.06249 * 180.29735 * 8 7 6 33 33 H 1.08000 * 120.06205 * 0.04643 * 11 10 9 34 34 H 1.08003 * 119.93975 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.88169 * 180.02562 * 13 12 11 36 36 H 1.09005 * 109.46617 * 30.27518 * 15 14 13 37 37 H 1.08998 * 109.47342 * 150.27768 * 15 14 13 38 38 H 0.97001 * 119.99412 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.06469 * 179.72168 * 24 14 13 40 40 H 1.07991 * 120.06065 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 2.1636 -2.0876 1.2273 7 6 2.6234 -2.7462 2.3532 8 6 2.9605 -2.0309 3.4848 9 6 2.8245 -0.6445 3.4954 10 6 3.1784 0.1291 4.7113 11 6 3.0482 1.5165 4.7201 12 6 3.3793 2.2310 5.8533 13 6 3.8403 1.5724 6.9792 14 6 3.9664 0.1952 6.9779 15 6 4.4633 -0.5159 8.2102 16 6 5.9654 -0.6240 8.1565 17 1 6.5063 -0.2180 7.3144 18 6 6.6494 -1.2402 9.1828 19 7 5.9909 -1.7333 10.2089 20 14 8.5114 -1.3749 9.1159 21 1 9.1042 -0.0146 9.0556 22 1 9.0011 -2.0743 10.3309 23 1 8.9091 -2.1420 7.9083 24 6 3.6436 -0.5289 5.8478 25 6 2.3602 0.0139 2.3584 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7211 -1.5952 -1.2330 30 1 1.9051 -2.6508 0.3427 31 1 2.7236 -3.8214 2.3455 32 1 3.3240 -2.5456 4.3618 33 1 2.6885 2.0317 3.8417 34 1 3.2783 3.3062 5.8613 35 1 4.0979 2.1354 7.8642 36 1 4.1710 0.0467 9.0969 37 1 4.0285 -1.5144 8.2537 38 1 6.4721 -2.1672 10.9308 39 1 3.7467 -1.6040 5.8463 40 1 2.2575 1.0889 2.3596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242547915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:37 Heat of formation + Delta-G solvation = -38.579467 kcal Electronic energy + Delta-G solvation = -20564.111293 eV Core-core repulsion = 17499.787321 eV Total energy + Delta-G solvation = -3064.323972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02412 -39.78224 -37.86334 -35.55724 -33.77539 -33.20888 -32.53298 -30.52857 -29.65051 -28.83677 -25.48934 -24.98345 -24.00456 -23.25260 -21.60715 -20.87802 -18.70096 -18.48957 -17.50880 -16.85374 -16.80341 -16.42831 -16.13266 -15.83672 -15.14973 -14.85484 -14.71344 -14.63010 -14.41456 -14.16708 -14.04009 -13.60726 -13.34042 -13.14800 -12.89554 -12.78277 -12.69007 -12.55885 -12.35872 -12.28695 -11.87607 -11.67949 -11.61614 -11.38294 -11.03216 -10.63599 -10.49643 -9.74072 -9.53629 -8.88864 -8.23496 -6.37231 -0.20968 0.40540 0.61570 1.03707 1.37327 1.39928 1.48452 2.36940 2.70011 3.07026 3.17512 3.52589 3.55643 3.72982 3.90236 4.05531 4.13299 4.22014 4.24560 4.34041 4.39882 4.42844 4.49402 4.60947 4.73919 4.86312 4.88867 5.02566 5.05139 5.10877 5.20796 5.27033 5.31765 5.34089 5.39737 5.50308 5.55767 5.64048 5.70786 5.84591 6.00270 6.06067 6.09491 6.23318 6.74859 6.79857 7.31442 8.85766 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.003466 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.315500 B = 8077.265546 C = 8659.932978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.148 3.852 3 H 0.109 0.891 4 O -0.571 6.571 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.116 4.116 8 C -0.134 4.134 9 C -0.050 4.050 10 C -0.057 4.057 11 C -0.128 4.128 12 C -0.110 4.110 13 C -0.136 4.136 14 C -0.063 4.063 15 C 0.057 3.943 16 C -0.531 4.531 17 H 0.052 0.948 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.128 4.128 25 C -0.109 4.109 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.387 0.613 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.116 0.884 36 H 0.005 0.995 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 3.103 -21.062 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.089 3.911 3 H 0.126 0.874 4 O -0.380 6.380 5 C -0.119 4.119 6 C -0.134 4.134 7 C -0.134 4.134 8 C -0.152 4.152 9 C -0.050 4.050 10 C -0.057 4.057 11 C -0.146 4.146 12 C -0.128 4.128 13 C -0.154 4.154 14 C -0.063 4.063 15 C 0.021 3.979 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.569 5.569 20 Si 0.789 3.211 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.146 4.146 25 C -0.127 4.127 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.237 0.763 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.134 0.866 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.988 3.584 -21.009 23.978 hybrid contribution 0.848 -1.021 1.199 1.789 sum -10.140 2.563 -19.810 22.401 Atomic orbital electron populations 1.22440 0.94002 1.03453 1.03347 1.20804 0.93924 0.95757 0.80571 0.87353 1.86604 1.77736 1.30427 1.43206 1.20721 0.99930 0.94793 0.96409 1.21215 0.99507 0.93821 0.98827 1.21304 0.98597 1.00962 0.92553 1.21480 1.00512 0.93775 0.99423 1.18895 0.99701 0.93323 0.93109 1.18943 1.00074 0.94104 0.92603 1.21379 1.01571 0.92400 0.99246 1.21334 0.98298 1.00995 0.92176 1.21254 1.00882 0.93597 0.99638 1.20341 0.94977 0.94862 0.96169 1.18091 0.95293 0.93956 0.90607 1.21328 0.92162 1.37699 1.05713 0.92945 1.25928 1.03830 0.94745 0.94771 1.70075 1.37835 1.39074 1.09911 0.85498 0.79010 0.78780 0.77788 1.19171 1.20323 1.19396 1.21107 1.00992 0.99602 0.92899 1.21188 0.99067 1.00726 0.91692 0.91236 0.90663 0.91512 0.76252 0.83142 0.83851 0.86782 0.82986 0.82865 0.86624 0.97676 0.98101 0.92471 0.87276 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.52 71.98 0.69 -1.30 16 2 C 0.15 2.21 3.83 29.85 0.11 2.33 16 3 H 0.11 1.57 8.05 -2.39 -0.02 1.55 16 4 O -0.57 -8.95 13.14 -148.98 -1.96 -10.91 16 5 C -0.12 -2.28 5.00 -19.90 -0.10 -2.38 16 6 C -0.12 -2.11 9.32 22.31 0.21 -1.91 16 7 C -0.12 -2.57 10.03 22.24 0.22 -2.34 16 8 C -0.13 -3.84 9.43 22.48 0.21 -3.63 16 9 C -0.05 -1.48 5.88 -20.04 -0.12 -1.60 16 10 C -0.06 -1.96 5.88 -20.04 -0.12 -2.08 16 11 C -0.13 -3.76 9.43 22.48 0.21 -3.55 16 12 C -0.11 -3.39 10.03 22.24 0.22 -3.17 16 13 C -0.14 -5.35 9.69 22.31 0.22 -5.13 16 14 C -0.06 -2.91 5.06 -19.90 -0.10 -3.01 16 15 C 0.06 3.17 5.10 29.10 0.15 3.32 16 16 C -0.53 -31.10 9.09 25.60 0.23 -30.87 16 17 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 20 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C -0.13 -5.31 9.08 22.48 0.20 -5.11 16 25 C -0.11 -2.52 9.06 22.48 0.20 -2.32 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.39 3.27 7.38 -74.06 -0.55 2.72 16 30 H 0.15 1.63 6.60 -2.91 -0.02 1.62 16 31 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.11 3.51 6.21 -2.92 -0.02 3.49 16 33 H 0.15 3.24 6.21 -2.91 -0.02 3.22 16 34 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.00 0.29 8.09 -2.38 -0.02 0.27 16 37 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.11 4.60 6.21 -2.91 -0.02 4.58 16 40 H 0.14 2.65 6.21 -2.91 -0.02 2.64 16 Total: -1.00 -70.43 335.85 3.77 -66.67 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.50 Total: 15.67 kcal Atomic # 6 Polarization: -64.88 SS G_CDS: 2.91 Total: -61.97 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.96 Total: -10.91 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.43 3.77 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242547915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.086 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds