Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42891 * 109.47481 * 2 1 4 4 C 1.35840 * 117.00307 * 180.02562 * 3 2 1 5 5 C 1.38582 * 120.11879 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.06620 * 180.02562 * 5 4 3 7 7 C 1.50698 * 119.85468 * 179.97438 * 6 5 4 8 8 C 1.38388 * 120.29851 * 0.02562 * 6 5 4 9 9 C 1.38002 * 120.23921 * 359.71889 * 8 6 5 10 10 C 1.39291 * 119.93340 * 0.55696 * 9 8 6 11 11 C 1.48344 * 120.15449 * 179.71957 * 10 9 8 12 12 C 1.39752 * 120.00767 * 129.72155 * 11 10 9 13 13 C 1.38379 * 120.38119 * 179.97438 * 12 11 10 14 14 C 1.37721 * 120.38128 * 359.97438 * 13 12 11 15 15 C 1.40762 * 119.99296 * 0.02562 * 14 13 12 16 16 C 1.41428 * 120.18241 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99660 * 204.50806 * 16 15 14 18 18 C 1.39924 * 120.00545 * 24.51140 * 16 15 14 19 19 N 1.30833 * 119.99680 * 17.89571 * 18 16 15 20 20 Si 1.86793 * 120.00414 * 197.90112 * 18 16 15 21 21 H 1.48498 * 109.47606 * 89.99725 * 20 18 16 22 22 H 1.48506 * 109.47177 * 209.99923 * 20 18 16 23 23 H 1.48502 * 109.47021 * 329.99768 * 20 18 16 24 24 C 1.38765 * 119.99938 * 309.44940 * 11 10 9 25 25 H 1.08997 * 109.46752 * 299.99874 * 1 2 3 26 26 H 1.08999 * 109.47212 * 59.99736 * 1 2 3 27 27 H 1.09002 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46782 * 239.99926 * 2 1 3 29 29 H 1.09001 * 109.46750 * 120.00502 * 2 1 3 30 30 H 1.08002 * 119.97202 * 0.02562 * 5 4 3 31 31 H 1.08997 * 109.47108 * 89.99803 * 7 6 5 32 32 H 1.09000 * 109.47352 * 210.00316 * 7 6 5 33 33 H 1.09009 * 109.46876 * 330.00048 * 7 6 5 34 34 H 1.08007 * 119.88312 * 179.97438 * 8 6 5 35 35 H 1.08001 * 120.03612 * 180.27776 * 9 8 6 36 36 H 1.08002 * 119.81075 * 359.95841 * 12 11 10 37 37 H 1.07999 * 119.81049 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.00577 * 180.02562 * 14 13 12 39 39 H 0.97004 * 120.00385 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.18799 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3531 1.5251 -0.0005 5 6 4.1996 0.4279 -0.0005 6 6 5.5693 0.6102 -0.0005 7 6 6.4853 -0.5864 0.0001 8 6 6.1037 1.8867 0.0000 9 6 5.2724 2.9882 -0.0054 10 6 3.8902 2.8158 0.0005 11 6 2.9920 3.9964 0.0011 12 6 1.9497 4.0821 -0.9259 13 6 1.1069 5.1797 -0.9319 14 6 1.2854 6.1999 -0.0242 15 6 2.3301 6.1300 0.9166 16 6 2.5167 7.1751 1.8510 17 1 3.4898 7.3399 2.2895 18 6 1.4407 7.9954 2.2073 19 7 0.2145 7.6061 1.9694 20 14 1.7548 9.6465 3.0225 21 1 1.8878 10.6959 1.9803 22 1 0.6186 9.9802 3.9188 23 1 3.0076 9.5760 3.8167 24 6 3.1833 5.0132 0.9258 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.7883 -0.5708 -0.0005 31 1 6.7062 -0.8754 -1.0274 32 1 7.4128 -0.3338 0.5139 33 1 5.9994 -1.4157 0.5143 34 1 7.1753 2.0214 0.0004 35 1 5.6930 3.9829 -0.0095 36 1 1.8012 3.2873 -1.6419 37 1 0.3041 5.2362 -1.6521 38 1 0.6238 7.0535 -0.0340 39 1 -0.5316 8.1749 2.2161 40 1 3.9848 4.9480 1.6467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243405667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -12.316496 kcal Electronic energy + Delta-G solvation = -21194.904280 eV Core-core repulsion = 18131.719155 eV Total energy + Delta-G solvation = -3063.185124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94432 -37.57053 -37.06781 -33.90492 -32.64334 -31.46804 -29.78751 -29.44067 -29.20156 -25.99127 -25.12610 -23.66281 -21.68986 -21.48368 -20.39902 -19.93964 -17.66022 -16.94674 -15.86915 -15.58062 -15.45109 -14.99973 -14.48229 -13.98009 -13.74194 -13.54169 -13.38305 -13.19891 -12.77114 -12.58121 -12.51164 -12.19870 -12.11885 -11.59081 -11.52493 -11.41185 -11.22888 -11.11301 -10.87891 -10.62944 -10.60607 -10.41848 -10.36739 -9.55836 -9.35894 -9.07947 -8.48693 -7.90156 -7.38630 -6.95843 -6.67418 -4.27987 1.55797 1.79067 2.86190 3.05632 3.11402 3.14920 3.28865 3.52949 3.99055 4.12325 4.70707 4.90944 5.01849 5.07976 5.15269 5.19856 5.32447 5.49861 5.57562 5.60057 5.63303 5.77573 5.82607 5.89455 5.90657 6.04960 6.18414 6.35944 6.38591 6.59441 6.64648 6.75226 6.88879 7.00155 7.09221 7.16953 7.33651 7.43525 7.61959 7.84083 7.97951 8.10049 8.16982 8.35075 8.70214 8.96861 9.03842 10.27389 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.004531 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.589628 B = 6177.563923 C = 7145.722607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.294 6.294 4 C 0.137 3.863 5 C -0.214 4.214 6 C -0.068 4.068 7 C -0.109 4.109 8 C -0.159 4.159 9 C -0.074 4.074 10 C -0.049 4.049 11 C -0.032 4.032 12 C -0.199 4.199 13 C -0.111 4.111 14 C -0.156 4.156 15 C 0.106 3.894 16 C -0.467 4.467 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.798 5.798 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.202 4.202 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -12.842 -3.327 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.207 6.207 4 C 0.091 3.909 5 C -0.232 4.232 6 C -0.068 4.068 7 C -0.166 4.166 8 C -0.177 4.177 9 C -0.092 4.092 10 C -0.049 4.049 11 C -0.033 4.033 12 C -0.219 4.219 13 C -0.129 4.129 14 C -0.176 4.176 15 C 0.104 3.896 16 C -0.497 4.497 17 H 0.094 0.906 18 C -0.140 4.140 19 N -0.424 5.424 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.222 4.222 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.640 -12.637 -3.273 13.854 hybrid contribution 0.032 0.453 0.455 0.643 sum 4.672 -12.184 -2.818 13.349 Atomic orbital electron populations 1.21744 0.92952 1.02139 1.03972 1.22711 0.95924 0.82979 1.00589 1.86282 1.18690 1.27636 1.88106 1.19021 0.82402 0.93246 0.96200 1.20927 0.93641 0.97492 1.11168 1.19571 0.93184 0.94891 0.99196 1.20741 0.98434 0.95521 1.01899 1.20792 0.99323 0.91802 1.05787 1.21114 0.91617 0.98991 0.97500 1.18541 0.93064 0.90793 1.02551 1.18118 0.95391 0.92279 0.97464 1.20304 0.99116 0.99522 1.02916 1.20606 0.98152 0.95260 0.98924 1.21384 1.01392 0.99100 0.95713 1.17505 0.90584 0.90679 0.90849 1.19526 0.96420 1.11827 1.21938 0.90577 1.25858 0.94498 0.99063 0.94588 1.69839 0.99292 1.35735 1.37496 0.86354 0.79026 0.82101 0.79445 1.19359 1.20433 1.18699 1.21012 1.04509 0.95012 1.01655 0.91316 0.91451 0.90928 0.92664 0.92621 0.86111 0.91504 0.91669 0.92020 0.86398 0.85274 0.89462 0.89437 0.86499 0.91048 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.05 0.71 5.46 37.16 0.20 0.91 16 3 O -0.29 -5.42 8.47 -19.24 -0.16 -5.58 16 4 C 0.14 2.53 6.59 -38.87 -0.26 2.27 16 5 C -0.21 -3.25 8.68 -39.48 -0.34 -3.59 16 6 C -0.07 -0.96 5.88 -104.59 -0.62 -1.58 16 7 C -0.11 -1.11 10.00 36.00 0.36 -0.75 16 8 C -0.16 -2.36 9.68 -39.61 -0.38 -2.74 16 9 C -0.07 -1.31 9.51 -39.28 -0.37 -1.68 16 10 C -0.05 -0.99 5.48 -104.76 -0.57 -1.57 16 11 C -0.03 -0.77 5.27 -104.98 -0.55 -1.32 16 12 C -0.20 -4.72 8.78 -38.96 -0.34 -5.06 16 13 C -0.11 -2.71 10.01 -39.72 -0.40 -3.11 16 14 C -0.16 -4.18 8.69 -38.82 -0.34 -4.52 16 15 C 0.11 2.90 5.57 -106.86 -0.60 2.31 16 16 C -0.47 -12.68 9.05 -37.74 -0.34 -13.02 16 17 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 18 C 0.08 1.97 5.13 -17.35 -0.09 1.88 16 19 N -0.80 -21.13 10.96 55.55 0.61 -20.52 16 20 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.20 -5.14 9.26 -38.52 -0.36 -5.50 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.64 7.66 -51.92 -0.40 0.24 16 29 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 30 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.06 0.56 8.08 -51.92 -0.42 0.14 16 34 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 2.18 8.05 -52.49 -0.42 1.76 16 36 H 0.09 1.94 7.67 -52.49 -0.40 1.54 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.20 6.15 -52.48 -0.32 2.88 16 39 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.09 2.25 8.04 -52.49 -0.42 1.82 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -29.57 336.25 -9.75 -39.32 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.62 Total: 6.12 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: -4.61 Total: -38.44 kcal Atomic # 7 Polarization: -21.13 SS G_CDS: 0.61 Total: -20.52 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.16 Total: -5.58 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.57 -9.75 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243405667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.003 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds