Wall clock time and date at job start Tue Mar 31 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38572 * 119.83193 * 2 1 4 4 C 1.38084 * 120.40326 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.97031 * 179.97438 * 4 3 2 6 6 C 1.38820 * 120.06147 * 0.25202 * 4 3 2 7 7 N 1.39152 * 120.16615 * 179.72404 * 6 4 3 8 8 C 1.40350 * 119.67283 * 359.49978 * 6 4 3 9 9 C 1.47731 * 120.20546 * 180.25258 * 8 6 4 10 10 C 1.40009 * 119.46247 * 230.35899 * 9 8 6 11 11 C 1.36533 * 119.46766 * 179.97438 * 10 9 8 12 12 C 1.41349 * 118.41774 * 359.97438 * 11 10 9 13 13 C 1.41017 * 120.54017 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99664 * 152.16207 * 13 12 11 15 15 C 1.39985 * 119.99935 * 332.15561 * 13 12 11 16 16 N 1.30816 * 120.00258 * 344.47710 * 15 13 12 17 17 Si 1.86804 * 119.99596 * 164.47376 * 15 13 12 18 18 H 1.48495 * 109.47346 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46915 * 120.00565 * 17 15 13 20 20 H 1.48513 * 109.46964 * 240.00080 * 17 15 13 21 21 C 1.40952 * 118.91653 * 0.02562 * 12 11 10 22 22 C 1.50694 * 119.79822 * 179.97438 * 21 12 11 23 23 N 1.31260 * 120.40513 * 359.71958 * 21 12 11 24 24 C 1.37834 * 119.83589 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47187 * 90.00370 * 1 2 3 26 26 H 1.09012 * 109.46907 * 209.99851 * 1 2 3 27 27 H 1.08992 * 109.47346 * 330.00043 * 1 2 3 28 28 H 1.08003 * 119.80196 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47147 * 89.99927 * 5 4 3 30 30 H 1.09003 * 109.46621 * 329.99872 * 5 4 3 31 31 H 1.08996 * 109.47287 * 210.00005 * 5 4 3 32 32 H 0.97007 * 119.99913 * 0.05039 * 7 6 4 33 33 H 0.97004 * 120.00485 * 180.02562 * 7 6 4 34 34 H 1.08001 * 120.27086 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.79314 * 179.97438 * 11 10 9 36 36 H 0.96999 * 119.99872 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.46834 * 90.00249 * 22 21 12 38 38 H 1.09004 * 109.47469 * 209.99886 * 22 21 12 39 39 H 1.08995 * 109.47245 * 330.00120 * 22 21 12 40 40 H 1.07997 * 120.03266 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2021 0.0000 4 6 3.5771 1.2159 -0.0005 5 6 4.3169 2.5288 -0.0011 6 6 4.2844 0.0214 -0.0064 7 7 5.6759 0.0328 -0.0127 8 6 3.5892 -1.1978 -0.0010 9 6 4.3301 -2.4759 -0.0015 10 6 3.9988 -3.4636 -0.9369 11 6 4.6839 -4.6446 -0.9378 12 6 5.7121 -4.8266 0.0149 13 6 6.4485 -6.0285 0.0537 14 1 7.4637 -6.0281 0.4221 15 6 5.8636 -7.2222 -0.3851 16 7 4.5670 -7.2964 -0.5418 17 14 6.9347 -8.7093 -0.7470 18 1 8.3575 -8.3680 -0.4934 19 1 6.5309 -9.8358 0.1321 20 1 6.7671 -9.1059 -2.1683 21 6 5.9892 -3.7870 0.9255 22 6 7.0808 -3.9600 1.9500 23 7 5.3058 -2.6672 0.8835 24 6 2.1927 -1.1956 -0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6504 2.1340 -0.0004 29 1 4.4956 2.8456 1.0264 30 1 3.7196 3.2821 -0.5149 31 1 5.2704 2.4084 -0.5153 32 1 6.1540 0.8768 -0.0123 33 1 6.1678 -0.8033 -0.0171 34 1 3.2078 -3.2927 -1.6520 35 1 4.4459 -5.4213 -1.6494 36 1 4.1617 -8.1236 -0.8455 37 1 8.0255 -3.6058 1.5375 38 1 6.8357 -3.3847 2.8428 39 1 7.1707 -5.0145 2.2106 40 1 1.6506 -2.1297 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244596993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:44 Heat of formation + Delta-G solvation = 25.719018 kcal Electronic energy + Delta-G solvation = -21333.887636 eV Core-core repulsion = 18304.644607 eV Total energy + Delta-G solvation = -3029.243030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.44407 -38.14888 -34.74554 -34.24239 -32.69473 -31.42199 -30.62359 -29.83723 -27.05295 -26.84453 -25.33320 -24.89159 -22.39326 -20.80001 -19.82278 -19.74748 -17.39445 -16.69300 -16.44974 -15.57646 -14.89290 -14.60320 -13.89905 -13.84485 -13.68276 -13.38925 -13.07813 -12.96485 -12.88381 -12.52239 -12.25299 -11.90038 -11.86040 -11.74323 -11.62603 -11.46310 -11.30848 -11.12695 -10.93974 -10.70633 -10.68927 -10.39438 -9.80999 -9.76651 -9.47379 -8.41498 -8.17936 -7.98162 -7.42205 -6.94585 -6.68347 -4.52334 1.81156 2.14958 2.60389 2.90733 2.97371 3.02060 3.10882 3.78034 4.27730 4.54757 4.54936 5.19090 5.27445 5.33087 5.54247 5.58705 5.66252 5.79099 5.82473 5.92827 5.97376 6.00728 6.12353 6.15428 6.31646 6.43802 6.55912 6.59846 6.62519 6.72657 6.80340 6.88530 6.96506 7.00921 7.09702 7.23545 7.31808 7.44186 7.70687 7.82306 7.89343 8.13475 8.33675 8.42168 8.58389 8.66293 9.57218 9.97198 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.004343 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.960193 B = 6445.430516 C = 7203.428228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.152 4.152 3 C -0.085 4.085 4 C -0.179 4.179 5 C -0.097 4.097 6 C 0.233 3.767 7 N -0.865 5.865 8 C -0.060 4.060 9 C 0.019 3.981 10 C -0.129 4.129 11 C -0.135 4.135 12 C 0.073 3.927 13 C -0.442 4.442 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.004 3.996 22 C -0.070 4.070 23 N -0.454 5.454 24 C -0.072 4.072 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.386 0.614 33 H 0.406 0.594 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.284 0.716 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 9.470 -0.756 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.155 4.155 3 C -0.104 4.104 4 C -0.184 4.184 5 C -0.154 4.154 6 C 0.126 3.874 7 N -0.404 5.404 8 C -0.065 4.065 9 C -0.117 4.117 10 C -0.150 4.150 11 C -0.160 4.160 12 C 0.068 3.932 13 C -0.472 4.472 14 H 0.104 0.896 15 C -0.146 4.146 16 N -0.409 5.409 17 Si 0.735 3.265 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.140 4.140 22 C -0.128 4.128 23 N -0.162 5.162 24 C -0.092 4.092 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.214 0.786 33 H 0.238 0.762 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.628 9.932 -0.237 10.067 hybrid contribution 0.406 -1.564 -0.840 1.822 sum -1.222 8.368 -1.078 8.525 Atomic orbital electron populations 1.20591 0.92122 1.01692 1.01202 1.19400 0.95239 0.92908 1.07910 1.20466 0.92602 0.96736 1.00619 1.19142 0.93795 0.93135 1.12307 1.20497 0.99311 0.94360 1.01238 1.17593 0.84222 0.92262 0.93328 1.42543 1.03461 1.10859 1.83587 1.18087 0.92073 0.90271 1.06116 1.18683 0.99651 0.93946 0.99397 1.21272 0.99936 0.94635 0.99122 1.21258 0.99030 0.95973 0.99722 1.18371 0.91932 0.93101 0.89750 1.19599 1.00421 0.91402 1.35736 0.89554 1.26019 0.95050 1.00979 0.92547 1.69795 1.10786 1.28490 1.31826 0.86198 0.81191 0.80103 0.78979 1.18147 1.19768 1.19572 1.21015 1.01374 0.92150 0.99449 1.20243 0.95013 1.01493 0.96053 1.66888 1.05178 1.23290 1.20894 1.20853 0.92571 0.97065 0.98713 0.92373 0.92297 0.92581 0.87208 0.92276 0.92181 0.92687 0.78561 0.76175 0.88424 0.85990 0.90496 0.93507 0.93293 0.91470 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.00 36.01 0.36 -0.90 16 2 C -0.15 -2.45 5.88 -104.65 -0.61 -3.07 16 3 C -0.09 -1.30 9.33 -39.51 -0.37 -1.67 16 4 C -0.18 -2.85 5.89 -104.46 -0.62 -3.47 16 5 C -0.10 -1.18 9.58 36.01 0.34 -0.84 16 6 C 0.23 4.31 6.72 -83.53 -0.56 3.75 16 7 N -0.86 -14.65 8.81 32.57 0.29 -14.36 16 8 C -0.06 -1.24 5.60 -104.70 -0.59 -1.82 16 9 C 0.02 0.44 5.73 -82.77 -0.47 -0.03 16 10 C -0.13 -3.04 9.45 -39.53 -0.37 -3.41 16 11 C -0.13 -3.39 8.71 -39.01 -0.34 -3.73 16 12 C 0.07 1.86 5.55 -106.63 -0.59 1.27 16 13 C -0.44 -10.92 8.06 -37.87 -0.31 -11.22 16 14 H 0.09 2.02 6.97 -52.49 -0.37 1.65 16 15 C 0.07 1.73 5.18 -17.33 -0.09 1.64 16 16 N -0.78 -19.26 11.07 55.55 0.62 -18.64 16 17 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 C 0.00 0.09 6.86 -81.81 -0.56 -0.47 16 22 C -0.07 -1.44 9.58 36.00 0.34 -1.10 16 23 N -0.45 -10.77 8.53 -5.42 -0.05 -10.82 16 24 C -0.07 -1.35 9.12 -39.20 -0.36 -1.71 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.73 8.08 -51.92 -0.42 0.31 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.05 0.62 6.53 -51.93 -0.34 0.28 16 32 H 0.39 5.29 6.81 -40.82 -0.28 5.01 16 33 H 0.41 7.66 6.57 -40.82 -0.27 7.39 16 34 H 0.10 2.10 8.03 -52.49 -0.42 1.68 16 35 H 0.12 3.12 6.42 -52.49 -0.34 2.79 16 36 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.36 6.81 -51.93 -0.35 1.00 16 40 H 0.12 2.12 8.03 -52.49 -0.42 1.70 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -27.24 329.91 -9.28 -36.52 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -5.29 Total: 16.60 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -4.79 Total: -26.77 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.86 Total: -43.83 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.24 -9.28 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244596993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.242 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds