Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47096 * 2 1 4 4 C 1.35906 * 117.00347 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.98006 * 0.02562 * 4 3 2 6 6 C 1.38276 * 120.24612 * 179.97438 * 5 4 3 7 7 C 1.37981 * 120.20741 * 359.71953 * 6 5 4 8 8 C 1.50700 * 120.02110 * 180.30222 * 7 6 5 9 9 C 1.39650 * 119.95863 * 0.53786 * 7 6 5 10 10 C 1.47876 * 120.12196 * 179.74299 * 9 7 6 11 11 C 1.39165 * 120.33230 * 244.44409 * 10 9 7 12 12 C 1.38091 * 119.98248 * 180.26988 * 11 10 9 13 13 C 1.38920 * 120.67548 * 0.02562 * 12 11 10 14 14 C 1.36440 * 120.68551 * 359.97438 * 13 12 11 15 15 C 1.40747 * 119.98562 * 359.97438 * 14 13 12 16 16 C 1.40886 * 120.33009 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99897 * 204.75387 * 16 15 14 18 18 C 1.40063 * 120.00113 * 24.75072 * 16 15 14 19 19 N 1.30781 * 120.00020 * 17.62560 * 18 16 15 20 20 Si 1.86806 * 120.00330 * 197.62573 * 18 16 15 21 21 H 1.48495 * 109.47016 * 89.99869 * 20 18 16 22 22 H 1.48500 * 109.46925 * 210.00329 * 20 18 16 23 23 H 1.48497 * 109.46556 * 329.99853 * 20 18 16 24 24 C 1.38412 * 119.98563 * 179.97438 * 4 3 2 25 25 H 1.08991 * 109.47554 * 300.00179 * 1 2 3 26 26 H 1.09003 * 109.46773 * 60.00192 * 1 2 3 27 27 H 1.09005 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47264 * 239.99616 * 2 1 3 29 29 H 1.08997 * 109.47192 * 119.99834 * 2 1 3 30 30 H 1.08001 * 119.87417 * 0.02562 * 5 4 3 31 31 H 1.07998 * 119.89786 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.46801 * 270.23522 * 8 7 6 33 33 H 1.09003 * 109.47304 * 30.23004 * 8 7 6 34 34 H 1.08995 * 109.47273 * 150.23783 * 8 7 6 35 35 H 1.08000 * 120.00779 * 0.27566 * 11 10 9 36 36 H 1.07998 * 119.66360 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.65958 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.01013 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00225 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.09960 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1995 0.4236 0.0005 6 6 5.5711 0.5985 0.0005 7 6 6.1090 1.8691 -0.0053 8 6 7.6045 2.0549 -0.0121 9 6 5.2666 2.9830 0.0002 10 6 5.8392 4.3464 -0.0003 11 6 5.6383 5.1933 1.0856 12 6 6.1716 6.4671 1.0751 13 6 6.9101 6.9173 -0.0120 14 6 7.1239 6.1100 -1.0909 15 6 6.5943 4.8062 -1.1098 16 6 6.8110 3.9662 -2.2199 17 1 6.1197 3.1643 -2.4335 18 6 7.9229 4.1711 -3.0467 19 7 8.9300 4.8893 -2.6220 20 14 7.9674 3.4186 -4.7559 21 1 7.3783 4.3707 -5.7313 22 1 9.3744 3.1302 -5.1332 23 1 7.1848 2.1566 -4.7614 24 6 3.8823 2.8046 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7842 -0.5734 -0.0003 31 1 6.2236 -0.2622 0.0009 32 1 7.9698 2.0983 1.0139 33 1 8.0723 1.2170 -0.5292 34 1 7.8529 2.9835 -0.5258 35 1 5.0657 4.8545 1.9362 36 1 6.0122 7.1202 1.9203 37 1 7.3200 7.9165 -0.0026 38 1 7.6993 6.4714 -1.9304 39 1 9.7002 5.0309 -3.1944 40 1 3.2256 3.6621 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244869824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -9.760785 kcal Electronic energy + Delta-G solvation = -21651.053687 eV Core-core repulsion = 18587.979387 eV Total energy + Delta-G solvation = -3063.074300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70151 -38.13825 -36.56621 -33.79365 -32.21545 -31.54207 -30.52941 -29.53428 -28.24812 -25.84280 -24.94836 -23.66407 -21.95757 -20.94780 -20.69378 -19.47886 -17.60759 -17.10574 -15.89413 -15.53505 -15.35229 -14.72117 -14.55288 -13.94386 -13.66960 -13.45217 -13.02875 -12.96032 -12.66925 -12.59295 -12.38242 -12.31385 -11.74726 -11.61873 -11.25915 -11.19537 -11.14455 -10.98970 -10.87962 -10.55283 -10.47464 -10.24248 -10.20970 -9.66749 -9.41858 -9.13555 -8.19883 -7.50758 -7.42411 -7.17479 -6.82189 -4.39893 1.93610 2.12122 2.74589 2.98127 3.04900 3.09257 3.21872 3.53093 3.89093 4.42470 4.58433 4.93326 5.00575 5.23061 5.38364 5.42453 5.52644 5.62615 5.75901 5.84361 5.92658 6.01882 6.06400 6.22742 6.29660 6.41301 6.48114 6.58857 6.60388 6.77560 6.89866 6.98850 7.05762 7.19042 7.22409 7.31564 7.47914 7.54556 7.63235 7.87647 7.94060 8.03488 8.08729 8.22348 8.57667 8.81106 8.90640 10.07998 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.005881 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.345811 B = 4759.827547 C = 5709.349046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.322 6.322 4 C 0.112 3.888 5 C -0.226 4.226 6 C -0.093 4.093 7 C -0.093 4.093 8 C -0.121 4.121 9 C 0.057 3.943 10 C -0.186 4.186 11 C -0.070 4.070 12 C -0.244 4.244 13 C -0.101 4.101 14 C -0.162 4.162 15 C 0.130 3.870 16 C -0.444 4.444 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.786 5.786 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.151 4.151 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.282 0.718 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 -7.580 2.321 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.068 3.932 5 C -0.245 4.245 6 C -0.111 4.111 7 C -0.093 4.093 8 C -0.177 4.177 9 C 0.057 3.943 10 C -0.188 4.188 11 C -0.088 4.088 12 C -0.263 4.263 13 C -0.120 4.120 14 C -0.181 4.181 15 C 0.128 3.872 16 C -0.473 4.473 17 H 0.099 0.901 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.726 3.274 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.170 4.170 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.730 -7.372 2.244 10.231 hybrid contribution 0.173 -0.650 -0.762 1.016 sum -6.558 -8.022 1.483 10.467 Atomic orbital electron populations 1.21761 0.93318 1.02351 1.03371 1.22636 0.95308 0.82943 1.00999 1.86028 1.19911 1.28231 1.89487 1.18798 0.81400 0.94186 0.98854 1.20983 0.94346 0.96985 1.12137 1.20666 0.93827 0.96653 0.99967 1.20013 0.96617 0.91668 1.01012 1.20998 0.90606 1.05177 1.00886 1.18474 0.90368 0.93166 0.92281 1.18490 1.11237 0.92266 0.96799 1.20531 0.98449 0.93573 0.96259 1.20255 1.09063 0.97016 0.99997 1.20467 0.98673 0.97967 0.94867 1.21054 1.04446 0.93837 0.98731 1.17450 0.88209 0.91353 0.90201 1.19516 1.07288 1.13170 1.07306 0.90071 1.25916 0.94591 0.93955 0.99578 1.69798 1.04423 1.30484 1.36329 0.86389 0.78297 0.80583 0.82126 1.19194 1.20230 1.18420 1.20580 0.94816 0.94055 1.07564 0.91694 0.91642 0.90813 0.92472 0.92537 0.86771 0.86812 0.93255 0.93534 0.86885 0.89307 0.89494 0.89561 0.86306 0.90676 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.69 5.46 37.16 0.20 0.90 16 3 O -0.32 -5.39 10.13 -19.44 -0.20 -5.58 16 4 C 0.11 2.08 6.68 -39.27 -0.26 1.81 16 5 C -0.23 -3.87 9.04 -39.32 -0.36 -4.22 16 6 C -0.09 -1.68 9.68 -39.66 -0.38 -2.06 16 7 C -0.09 -1.92 5.30 -104.19 -0.55 -2.47 16 8 C -0.12 -2.49 9.26 36.01 0.33 -2.15 16 9 C 0.06 1.26 4.39 -104.92 -0.46 0.80 16 10 C -0.19 -4.42 4.67 -104.22 -0.49 -4.91 16 11 C -0.07 -1.58 9.73 -39.29 -0.38 -1.96 16 12 C -0.24 -5.42 10.03 -39.38 -0.40 -5.82 16 13 C -0.10 -2.33 9.96 -39.98 -0.40 -2.73 16 14 C -0.16 -4.04 8.64 -39.28 -0.34 -4.38 16 15 C 0.13 3.29 4.54 -106.56 -0.48 2.81 16 16 C -0.44 -11.10 6.12 -37.90 -0.23 -11.34 16 17 H 0.08 2.08 7.05 -52.48 -0.37 1.71 16 18 C 0.08 1.87 5.14 -17.31 -0.09 1.78 16 19 N -0.79 -19.05 10.96 55.55 0.61 -18.44 16 20 Si 0.90 18.27 29.60 -169.99 -5.03 13.24 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.15 -3.12 9.68 -39.02 -0.38 -3.50 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.11 1.61 6.28 -52.49 -0.33 1.28 16 31 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.11 2.70 4.28 -51.93 -0.22 2.47 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.12 3.05 6.17 -52.49 -0.32 2.72 16 39 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 40 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -26.43 328.93 -9.34 -35.78 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.40 Total: 8.56 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -4.28 Total: -38.50 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.61 Total: -18.44 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.58 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.43 -9.34 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244869824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.015 kcal (2) G-P(sol) polarization free energy of solvation -26.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds