Wall clock time and date at job start Tue Mar 31 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47096 * 2 1 4 4 C 1.35906 * 117.00347 * 179.97438 * 3 2 1 5 5 C 1.38906 * 119.98006 * 0.02562 * 4 3 2 6 6 C 1.38276 * 120.24612 * 179.97438 * 5 4 3 7 7 C 1.37981 * 120.20741 * 359.71953 * 6 5 4 8 8 C 1.50700 * 120.02110 * 180.30222 * 7 6 5 9 9 C 1.39650 * 119.95863 * 0.53786 * 7 6 5 10 10 C 1.47876 * 120.12196 * 179.74299 * 9 7 6 11 11 C 1.39165 * 120.33230 * 244.44409 * 10 9 7 12 12 C 1.38091 * 119.98248 * 180.26988 * 11 10 9 13 13 C 1.38920 * 120.67548 * 0.02562 * 12 11 10 14 14 C 1.36440 * 120.68551 * 359.97438 * 13 12 11 15 15 C 1.40747 * 119.98562 * 359.97438 * 14 13 12 16 16 C 1.40886 * 120.33009 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99897 * 204.75387 * 16 15 14 18 18 C 1.40063 * 120.00113 * 24.75072 * 16 15 14 19 19 N 1.30781 * 120.00020 * 17.62560 * 18 16 15 20 20 Si 1.86806 * 120.00330 * 197.62573 * 18 16 15 21 21 H 1.48495 * 109.47016 * 89.99869 * 20 18 16 22 22 H 1.48500 * 109.46925 * 210.00329 * 20 18 16 23 23 H 1.48497 * 109.46556 * 329.99853 * 20 18 16 24 24 C 1.38412 * 119.98563 * 179.97438 * 4 3 2 25 25 H 1.08991 * 109.47554 * 300.00179 * 1 2 3 26 26 H 1.09003 * 109.46773 * 60.00192 * 1 2 3 27 27 H 1.09005 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47264 * 239.99616 * 2 1 3 29 29 H 1.08997 * 109.47192 * 119.99834 * 2 1 3 30 30 H 1.08001 * 119.87417 * 0.02562 * 5 4 3 31 31 H 1.07998 * 119.89786 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.46801 * 270.23522 * 8 7 6 33 33 H 1.09003 * 109.47304 * 30.23004 * 8 7 6 34 34 H 1.08995 * 109.47273 * 150.23783 * 8 7 6 35 35 H 1.08000 * 120.00779 * 0.27566 * 11 10 9 36 36 H 1.07998 * 119.66360 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.65958 * 180.02562 * 13 12 11 38 38 H 1.07996 * 120.01013 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00225 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.09960 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1995 0.4236 0.0005 6 6 5.5711 0.5985 0.0005 7 6 6.1090 1.8691 -0.0053 8 6 7.6045 2.0549 -0.0121 9 6 5.2666 2.9830 0.0002 10 6 5.8392 4.3464 -0.0003 11 6 5.6383 5.1933 1.0856 12 6 6.1716 6.4671 1.0751 13 6 6.9101 6.9173 -0.0120 14 6 7.1239 6.1100 -1.0909 15 6 6.5943 4.8062 -1.1098 16 6 6.8110 3.9662 -2.2199 17 1 6.1197 3.1643 -2.4335 18 6 7.9229 4.1711 -3.0467 19 7 8.9300 4.8893 -2.6220 20 14 7.9674 3.4186 -4.7559 21 1 7.3783 4.3707 -5.7313 22 1 9.3744 3.1302 -5.1332 23 1 7.1848 2.1566 -4.7614 24 6 3.8823 2.8046 0.0000 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7842 -0.5734 -0.0003 31 1 6.2236 -0.2622 0.0009 32 1 7.9698 2.0983 1.0139 33 1 8.0723 1.2170 -0.5292 34 1 7.8529 2.9835 -0.5258 35 1 5.0657 4.8545 1.9362 36 1 6.0122 7.1202 1.9203 37 1 7.3200 7.9165 -0.0026 38 1 7.6993 6.4714 -1.9304 39 1 9.7002 5.0309 -3.1944 40 1 3.2256 3.6621 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244869824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:24 Heat of formation + Delta-G solvation = -20.345799 kcal Electronic energy + Delta-G solvation = -21651.512688 eV Core-core repulsion = 18587.979387 eV Total energy + Delta-G solvation = -3063.533301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10967 -39.71858 -38.10331 -35.59701 -33.48009 -33.06946 -31.82281 -31.30285 -29.89381 -27.49243 -26.62452 -24.84943 -23.36338 -22.67858 -22.31031 -20.97742 -19.22897 -18.71166 -17.17035 -16.95676 -16.86187 -16.32088 -16.09579 -15.58252 -15.38131 -14.86090 -14.42372 -14.36383 -14.23365 -13.94762 -13.83698 -13.46863 -13.31439 -13.09352 -12.86553 -12.78423 -12.57425 -12.42714 -12.36035 -12.16500 -12.13269 -11.70869 -11.56156 -11.32422 -11.15150 -10.91694 -9.76373 -9.27702 -9.15585 -8.77292 -8.58259 -6.26121 0.40842 0.62780 1.01664 1.18416 1.38492 1.49045 1.53512 2.20746 2.35581 2.76089 2.93140 3.75943 3.96034 4.04980 4.09522 4.22764 4.27582 4.40290 4.46660 4.48868 4.52653 4.64165 4.70514 4.86585 4.93621 4.96760 4.99007 4.99457 5.17442 5.21745 5.25583 5.33870 5.42052 5.48945 5.57320 5.60277 5.73389 5.92037 6.00121 6.12852 6.21706 6.24804 6.40157 6.60682 6.72263 6.96827 7.06949 8.32304 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.005881 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.345811 B = 4759.827547 C = 5709.349046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.337 6.337 4 C 0.115 3.885 5 C -0.215 4.215 6 C -0.088 4.088 7 C -0.114 4.114 8 C -0.115 4.115 9 C 0.033 3.967 10 C -0.190 4.190 11 C -0.082 4.082 12 C -0.244 4.244 13 C -0.107 4.107 14 C -0.188 4.188 15 C 0.108 3.892 16 C -0.459 4.459 17 H 0.067 0.933 18 C 0.047 3.953 19 N -0.811 5.811 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.265 1.265 23 H -0.263 1.263 24 C -0.171 4.171 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -9.837 2.514 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.070 3.930 5 C -0.234 4.234 6 C -0.105 4.105 7 C -0.114 4.114 8 C -0.171 4.171 9 C 0.033 3.967 10 C -0.192 4.192 11 C -0.100 4.100 12 C -0.263 4.263 13 C -0.126 4.126 14 C -0.207 4.207 15 C 0.105 3.895 16 C -0.488 4.488 17 H 0.085 0.915 18 C -0.170 4.170 19 N -0.436 5.436 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.187 1.187 24 C -0.190 4.190 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.720 -9.625 2.450 12.579 hybrid contribution 0.356 -0.005 -0.722 0.805 sum -7.364 -9.630 1.728 12.246 Atomic orbital electron populations 1.21802 0.91375 1.04214 1.03027 1.23061 0.96935 0.80920 1.02173 1.86032 1.18726 1.31363 1.89088 1.18827 0.82632 0.93773 0.97780 1.21357 0.93765 0.98230 1.10021 1.20996 0.94814 0.96416 0.98315 1.20106 0.96302 0.92587 1.02449 1.20869 0.91288 1.04047 1.00888 1.18489 0.91196 0.92781 0.94275 1.18807 1.10371 0.93522 0.96481 1.20833 0.98684 0.93861 0.96622 1.20592 1.08026 0.97268 1.00447 1.20730 0.98555 0.98760 0.94506 1.21065 1.05779 0.94532 0.99352 1.17717 0.89039 0.91667 0.91044 1.19441 1.07776 1.13286 1.08333 0.91522 1.26535 0.93836 0.94272 1.02361 1.69834 1.04900 1.31372 1.37530 0.85479 0.78673 0.79499 0.77905 1.19008 1.18944 1.18719 1.20548 0.94315 0.95129 1.09026 0.91897 0.92182 0.87799 0.91444 0.91012 0.83024 0.83741 0.92780 0.91936 0.90280 0.87665 0.86713 0.87391 0.87739 0.90016 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.04 0.93 5.46 71.98 0.39 1.32 16 3 O -0.34 -10.70 10.13 -92.49 -0.94 -11.64 16 4 C 0.11 4.10 6.68 22.47 0.15 4.25 16 5 C -0.22 -6.73 9.04 22.44 0.20 -6.53 16 6 C -0.09 -2.96 9.68 22.22 0.22 -2.74 16 7 C -0.11 -4.69 5.30 -19.58 -0.10 -4.80 16 8 C -0.11 -4.76 9.26 71.24 0.66 -4.10 16 9 C 0.03 1.47 4.39 -20.06 -0.09 1.38 16 10 C -0.19 -9.31 4.67 -19.61 -0.09 -9.40 16 11 C -0.08 -3.74 9.73 22.46 0.22 -3.52 16 12 C -0.24 -10.80 10.03 22.40 0.22 -10.58 16 13 C -0.11 -5.00 9.96 22.01 0.22 -4.78 16 14 C -0.19 -9.77 8.64 22.46 0.19 -9.57 16 15 C 0.11 5.66 4.54 -21.12 -0.10 5.57 16 16 C -0.46 -23.85 6.12 23.36 0.14 -23.70 16 17 H 0.07 3.55 7.05 -2.91 -0.02 3.53 16 18 C 0.05 2.26 5.14 85.29 0.44 2.70 16 19 N -0.81 -40.46 10.96 21.85 0.24 -40.22 16 20 Si 0.96 37.84 29.60 68.60 2.03 39.87 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.17 -7.14 9.68 22.64 0.22 -6.92 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 29 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 30 H 0.15 3.56 6.28 -2.91 -0.02 3.54 16 31 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 34 H 0.08 3.90 4.28 -2.39 -0.01 3.89 16 35 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.10 5.62 6.17 -2.91 -0.02 5.60 16 39 H 0.29 13.09 8.29 -92.71 -0.77 12.32 16 40 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -58.78 328.93 6.00 -52.78 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 1.03 Total: 32.28 kcal Atomic # 6 Polarization: -76.70 SS G_CDS: 3.64 Total: -73.06 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.24 Total: -40.22 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.94 Total: -11.64 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -58.78 6.00 -52.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244869824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.432 kcal (2) G-P(sol) polarization free energy of solvation -58.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds