Wall clock time and date at job start Tue Mar 31 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47411 * 2 1 4 4 C 1.52997 * 109.47208 * 120.00452 * 2 1 3 5 5 C 1.50703 * 109.46880 * 294.99634 * 4 2 1 6 6 C 1.38306 * 119.92975 * 270.29837 * 5 4 2 7 7 C 1.38104 * 120.06267 * 180.29756 * 6 5 4 8 8 C 1.38874 * 119.93265 * 359.43007 * 7 6 5 9 9 O 1.35749 * 120.06890 * 180.29770 * 8 7 6 10 10 C 1.34834 * 117.00013 * 354.46142 * 9 8 7 11 11 H 1.07996 * 120.00021 * 5.05939 * 10 9 8 12 12 C 1.38654 * 119.99707 * 185.05824 * 10 9 8 13 13 N 1.31550 * 120.00182 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99577 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47369 * 59.99976 * 14 12 10 16 16 H 1.48494 * 109.47142 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47275 * 300.00018 * 14 12 10 18 18 C 1.38882 * 119.86301 * 0.27303 * 8 7 6 19 19 C 1.38094 * 119.92975 * 0.02562 * 18 8 7 20 20 C 1.50709 * 109.46982 * 239.99930 * 2 1 3 21 21 C 1.38237 * 119.99819 * 299.72860 * 20 2 1 22 22 C 1.38234 * 119.99260 * 179.81012 * 21 20 2 23 23 C 1.38237 * 120.00527 * 0.39196 * 22 21 20 24 24 C 1.38238 * 119.99577 * 359.86122 * 23 22 21 25 25 C 1.38229 * 119.99780 * 119.99767 * 20 2 1 26 26 H 1.08997 * 109.46852 * 299.99450 * 1 2 3 27 27 H 1.09001 * 109.47212 * 60.00118 * 1 2 3 28 28 H 1.09003 * 109.46717 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47356 * 174.99913 * 4 2 1 30 30 H 1.08998 * 109.47494 * 54.99855 * 4 2 1 31 31 H 1.07990 * 119.96779 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.02708 * 179.69965 * 7 6 5 33 33 H 0.97006 * 119.99724 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.03486 * 180.02562 * 18 8 7 35 35 H 1.08006 * 119.96521 * 180.02562 * 19 18 8 36 36 H 1.07995 * 120.00010 * 359.97438 * 21 20 2 37 37 H 1.08006 * 119.99639 * 180.23146 * 22 21 20 38 38 H 1.07998 * 119.99935 * 179.83321 * 23 22 21 39 39 H 1.07997 * 119.99641 * 179.97438 * 24 23 22 40 40 H 1.08008 * 120.00218 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4765 6 6 2.4803 1.0373 2.9746 7 6 2.1205 1.7480 4.1028 8 6 0.9097 1.4856 4.7303 9 8 0.5506 2.1867 5.8359 10 6 1.4621 3.0423 6.3410 11 1 2.3947 3.2063 5.8216 12 6 1.2020 3.7115 7.5271 13 7 0.0658 3.5121 8.1594 14 14 2.4645 4.8975 8.2265 15 1 2.7164 5.9859 7.2482 16 1 1.9498 5.4784 9.4924 17 1 3.7311 4.1704 8.4951 18 6 0.0668 0.5048 4.2240 19 6 0.4349 -0.2067 3.0992 20 6 2.0323 -0.7105 -1.2305 21 6 1.7030 -2.0356 -1.4464 22 6 2.1605 -2.6860 -2.5771 23 6 2.9541 -2.0138 -3.4878 24 6 3.2877 -0.6902 -3.2692 25 6 2.8270 -0.0387 -2.1404 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1264 -0.7996 1.2055 30 1 1.6054 -1.7199 1.2951 31 1 3.4195 1.2442 2.4834 32 1 2.7782 2.5100 4.4941 33 1 -0.1160 3.9801 8.9894 34 1 -0.8757 0.2987 4.7096 35 1 -0.2203 -0.9693 2.7048 36 1 1.0861 -2.5618 -0.7331 37 1 1.9001 -3.7202 -2.7477 38 1 3.3137 -2.5228 -4.3698 39 1 3.9080 -0.1652 -3.9804 40 1 3.0876 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250109552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:18 Heat of formation + Delta-G solvation = 3.361962 kcal Electronic energy + Delta-G solvation = -20545.578012 eV Core-core repulsion = 17483.072756 eV Total energy + Delta-G solvation = -3062.505255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72776 -38.94889 -37.01899 -34.90722 -32.29522 -31.01571 -30.53129 -30.18775 -28.68065 -26.24254 -25.01139 -23.33903 -22.54680 -21.90885 -20.73534 -19.62634 -17.96068 -17.03690 -16.85922 -15.51128 -15.15948 -14.73830 -14.57687 -14.36394 -14.00652 -13.72094 -13.62337 -13.43503 -13.30180 -12.96386 -12.69036 -12.52329 -12.24267 -11.90883 -11.65043 -11.45289 -11.30385 -11.09842 -11.02641 -10.74170 -10.57532 -10.48383 -10.40111 -10.29149 -9.31740 -9.01796 -8.85021 -8.71790 -8.15507 -7.12259 -6.43878 -4.02747 1.27870 1.30365 2.22764 2.34534 3.13462 3.14587 3.17315 3.70537 3.97568 4.52162 4.69930 4.74674 4.88718 5.01332 5.08952 5.14929 5.29600 5.37459 5.38550 5.45398 5.48701 5.64371 5.66158 5.83833 5.89088 5.92361 5.97504 6.03063 6.11273 6.23077 6.29369 6.31364 6.40606 6.44162 6.47154 6.65568 6.74081 6.91940 6.94456 7.08255 7.27147 7.41990 7.46120 7.85140 8.01172 9.01819 9.72559 10.74215 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038303 B = 0.002937 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.832931 B = 9531.571939 C = 9983.605106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.078 0.922 4 C -0.051 4.051 5 C -0.179 4.179 6 C -0.068 4.068 7 C -0.233 4.233 8 C 0.152 3.848 9 O -0.179 6.179 10 C -0.392 4.392 11 H 0.091 0.909 12 C 0.039 3.961 13 N -0.864 5.864 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.270 1.270 18 C -0.193 4.193 19 C -0.069 4.069 20 C -0.067 4.067 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.270 0.730 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -8.690 -18.820 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.096 0.904 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.087 4.087 7 C -0.252 4.252 8 C 0.098 3.902 9 O -0.083 6.083 10 C -0.468 4.468 11 H 0.108 0.892 12 C -0.165 4.165 13 N -0.499 5.499 14 Si 0.765 3.235 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.212 4.212 19 C -0.087 4.087 20 C -0.067 4.067 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.196 -8.590 -18.454 20.783 hybrid contribution 0.734 0.641 0.310 1.023 sum 4.930 -7.949 -18.144 20.413 Atomic orbital electron populations 1.21892 0.94218 1.01755 1.02226 1.20222 0.96291 0.99170 0.91119 0.90402 1.20367 1.00116 0.97470 0.90918 1.19216 0.97031 1.02131 0.99645 1.20607 0.97970 0.94914 0.95183 1.21148 0.99214 1.05347 0.99485 1.19390 0.92290 0.90469 0.88015 1.83978 1.40346 1.48306 1.35638 1.21270 0.98920 1.20133 1.06515 0.89174 1.25276 0.97583 0.98242 0.95399 1.70028 1.22522 1.40773 1.16559 0.85795 0.79535 0.79669 0.78516 1.19520 1.20283 1.19521 1.20212 1.01350 0.99668 0.99956 1.20497 0.95438 0.98312 0.94488 1.20065 0.96454 0.94173 0.96005 1.21040 1.00283 0.94453 0.97541 1.21134 0.98238 0.99760 0.94720 1.21095 0.99365 0.94980 0.99558 1.21122 1.00128 0.94977 0.97610 1.21127 0.98192 0.99998 0.94476 0.91075 0.93229 0.92866 0.92042 0.91921 0.87717 0.85695 0.91997 0.86657 0.87216 0.86061 0.86355 0.86504 0.86371 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.58 37.16 0.32 -1.39 16 2 C -0.05 -0.60 2.55 -91.77 -0.23 -0.83 16 3 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 4 C -0.05 -0.68 4.57 -27.88 -0.13 -0.80 16 5 C -0.18 -2.97 4.72 -104.57 -0.49 -3.46 16 6 C -0.07 -1.25 9.69 -39.61 -0.38 -1.63 16 7 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 8 C 0.15 3.67 6.65 -39.11 -0.26 3.41 16 9 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16 10 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 11 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 12 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 13 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 14 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 C -0.19 -4.04 9.99 -39.40 -0.39 -4.44 16 19 C -0.07 -1.20 7.95 -39.61 -0.31 -1.52 16 20 C -0.07 -0.76 4.78 -104.62 -0.50 -1.26 16 21 C -0.12 -1.21 8.76 -39.58 -0.35 -1.56 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.28 9.67 -39.59 -0.38 -1.66 16 26 H 0.07 0.95 6.27 -51.93 -0.33 0.63 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 29 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.06 0.77 7.50 -51.93 -0.39 0.38 16 31 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 35 H 0.11 1.60 8.04 -52.48 -0.42 1.18 16 36 H 0.12 1.16 7.16 -52.49 -0.38 0.78 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.15 7.95 -52.48 -0.42 0.73 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -30.39 334.37 -9.09 -39.48 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.38 Total: 4.71 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -4.48 Total: -34.97 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.76 Total: -24.69 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.39 -9.09 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250109552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.839 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds