Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46443 * 2 1 4 4 C 1.52997 * 109.47213 * 240.00326 * 2 1 3 5 5 C 1.50701 * 109.47388 * 64.99586 * 4 2 1 6 6 C 1.38305 * 119.92910 * 270.25442 * 5 4 2 7 7 C 1.38104 * 120.06272 * 180.25358 * 6 5 4 8 8 C 1.38874 * 119.93265 * 359.47314 * 7 6 5 9 9 O 1.35749 * 120.06890 * 180.29770 * 8 7 6 10 10 C 1.34834 * 117.00013 * 354.46142 * 9 8 7 11 11 H 1.07996 * 120.00021 * 5.05939 * 10 9 8 12 12 C 1.38654 * 119.99707 * 185.05824 * 10 9 8 13 13 N 1.31550 * 120.00182 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99577 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47118 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.47416 * 119.99910 * 14 12 10 17 17 H 1.48499 * 109.47261 * 240.00285 * 14 12 10 18 18 C 1.38882 * 119.86301 * 0.27303 * 8 7 6 19 19 C 1.38094 * 119.92975 * 0.02562 * 18 8 7 20 20 C 1.50694 * 109.47289 * 119.99542 * 2 1 3 21 21 C 1.38241 * 119.99607 * 59.73223 * 20 2 1 22 22 C 1.38235 * 119.99687 * 179.78461 * 21 20 2 23 23 C 1.38234 * 120.00065 * 0.44444 * 22 21 20 24 24 C 1.38235 * 119.99970 * 359.80922 * 23 22 21 25 25 C 1.38230 * 120.00457 * 240.00233 * 20 2 1 26 26 H 1.09003 * 109.47711 * 299.99964 * 1 2 3 27 27 H 1.09003 * 109.47780 * 60.00156 * 1 2 3 28 28 H 1.09005 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47066 * 304.99672 * 4 2 1 30 30 H 1.08998 * 109.47140 * 184.99920 * 4 2 1 31 31 H 1.07990 * 119.96792 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.02708 * 179.74272 * 7 6 5 33 33 H 0.97006 * 119.99724 * 179.97438 * 13 12 10 34 34 H 1.08005 * 120.03486 * 180.02562 * 18 8 7 35 35 H 1.08006 * 119.96521 * 180.02562 * 19 18 8 36 36 H 1.07999 * 119.99772 * 359.97438 * 21 20 2 37 37 H 1.08004 * 119.99832 * 180.26799 * 22 21 20 38 38 H 1.08002 * 120.00082 * 179.83371 * 23 22 21 39 39 H 1.08002 * 119.99767 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.00059 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 6 0.4322 -0.2027 -3.0958 7 6 0.0664 0.5052 -4.2238 8 6 0.9090 1.4863 -4.7298 9 8 0.5495 2.1880 -5.8348 10 6 -0.5826 1.8070 -6.4603 11 1 -1.2011 1.0318 -6.0328 12 6 -0.9527 2.4107 -7.6525 13 7 -0.1996 3.3554 -8.1729 14 14 -2.5214 1.8834 -8.5187 15 1 -3.1847 0.8121 -7.7328 16 1 -3.4360 3.0471 -8.6385 17 1 -2.1911 1.3719 -9.8731 18 6 2.1201 1.7485 -4.1026 19 6 2.4830 1.0329 -2.9786 20 6 2.0323 -0.7103 1.2305 21 6 1.6938 -2.0321 1.4521 22 6 2.1582 -2.6850 2.5785 23 6 2.9537 -2.0134 3.4880 24 6 3.2878 -0.6901 3.2690 25 6 2.8270 -0.0385 2.1404 26 1 -0.3634 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2056 31 1 -0.2248 -0.9624 -2.6991 32 1 -0.8760 0.2990 -4.7093 33 1 -0.4583 3.7775 -9.0072 34 1 2.7774 2.5111 -4.4934 35 1 3.4245 1.2366 -2.4902 36 1 1.0690 -2.5556 0.7435 37 1 1.8973 -3.7190 2.7495 38 1 3.3143 -2.5227 4.3694 39 1 3.9096 -0.1655 3.9794 40 1 3.0883 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250109556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = 3.242889 kcal Electronic energy + Delta-G solvation = -20556.558353 eV Core-core repulsion = 17494.047935 eV Total energy + Delta-G solvation = -3062.510419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72901 -38.95073 -37.01665 -34.91411 -32.29466 -31.01770 -30.54345 -30.15356 -28.72614 -26.13432 -25.14253 -23.28954 -22.54517 -21.91104 -20.72072 -19.66748 -17.95767 -16.98514 -16.87835 -15.56920 -15.17097 -14.63575 -14.60724 -14.38415 -14.02109 -13.78802 -13.50263 -13.41663 -13.27476 -13.11475 -12.67574 -12.50114 -12.21888 -11.89459 -11.66110 -11.44856 -11.28509 -11.11679 -11.09097 -10.74106 -10.55087 -10.45217 -10.41319 -10.27753 -9.31180 -9.01863 -8.85810 -8.72003 -8.15508 -7.12409 -6.44317 -4.03011 1.27797 1.30297 2.22719 2.34242 3.12339 3.13889 3.19358 3.70466 3.97147 4.52091 4.69905 4.74606 4.88661 5.01316 5.09058 5.14126 5.30906 5.36546 5.38437 5.45387 5.48569 5.63494 5.68941 5.80408 5.89020 5.92689 5.98376 6.02892 6.12457 6.23038 6.29056 6.31906 6.40457 6.43925 6.46864 6.65965 6.74016 6.91981 6.94075 7.08717 7.27400 7.41710 7.46084 7.85054 8.01003 9.01660 9.72577 10.73963 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041901 B = 0.002917 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.076656 B = 9595.681778 C = 9975.475240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 H 0.078 0.922 4 C -0.051 4.051 5 C -0.179 4.179 6 C -0.066 4.066 7 C -0.233 4.233 8 C 0.152 3.848 9 O -0.180 6.180 10 C -0.391 4.391 11 H 0.092 0.908 12 C 0.038 3.962 13 N -0.863 5.863 14 Si 0.940 3.060 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.192 4.192 19 C -0.071 4.071 20 C -0.067 4.067 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.269 0.731 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -9.239 18.810 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.096 0.904 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.084 4.084 7 C -0.253 4.253 8 C 0.099 3.901 9 O -0.083 6.083 10 C -0.467 4.467 11 H 0.109 0.891 12 C -0.166 4.166 13 N -0.499 5.499 14 Si 0.765 3.235 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.211 4.211 19 C -0.090 4.090 20 C -0.067 4.067 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.760 -8.890 18.477 20.846 hybrid contribution -0.798 -0.279 -0.413 0.940 sum 2.962 -9.169 18.064 20.473 Atomic orbital electron populations 1.21896 0.94241 1.01755 1.02225 1.20217 0.96267 0.99169 0.91126 0.90373 1.20366 1.00113 0.97476 0.90914 1.19218 0.96964 1.02196 0.99639 1.20606 0.95216 0.98052 0.94571 1.21159 1.02310 1.01689 1.00102 1.19389 0.92510 0.90118 0.88131 1.83980 1.41014 1.49590 1.33756 1.21365 0.98520 1.21990 1.04830 0.89064 1.25283 0.99393 0.96022 0.95874 1.70048 1.37240 1.23296 1.19279 0.85655 0.79959 0.78630 0.79231 1.19119 1.20168 1.20155 1.20205 0.96586 1.05023 0.99287 1.20499 0.98201 0.95167 0.95094 1.20062 0.96448 0.94196 0.95988 1.21045 1.00203 0.94502 0.97576 1.21134 0.98205 0.99739 0.94772 1.21094 0.99385 0.94985 0.99533 1.21122 1.00119 0.94975 0.97620 1.21123 0.98242 0.99974 0.94444 0.93225 0.91085 0.92890 0.91964 0.91999 0.87655 0.85677 0.92105 0.86663 0.87268 0.86080 0.86361 0.86505 0.86364 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.56 37.16 0.32 -1.42 16 2 C -0.05 -0.59 2.55 -91.78 -0.23 -0.83 16 3 H 0.08 0.98 7.88 -51.93 -0.41 0.57 16 4 C -0.05 -0.68 4.58 -27.88 -0.13 -0.80 16 5 C -0.18 -2.97 4.72 -104.57 -0.49 -3.46 16 6 C -0.07 -1.18 7.93 -39.61 -0.31 -1.50 16 7 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 8 C 0.15 3.67 6.65 -39.11 -0.26 3.41 16 9 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 10 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 11 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 12 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 13 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 14 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 C -0.19 -4.05 9.99 -39.40 -0.39 -4.45 16 19 C -0.07 -1.26 9.69 -39.61 -0.38 -1.65 16 20 C -0.07 -0.75 4.78 -104.63 -0.50 -1.25 16 21 C -0.12 -1.22 8.76 -39.58 -0.35 -1.56 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.27 9.67 -39.59 -0.38 -1.65 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.97 6.25 -51.93 -0.32 0.65 16 28 H 0.05 0.58 7.37 -51.93 -0.38 0.20 16 29 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 30 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.11 1.61 8.02 -52.49 -0.42 1.19 16 32 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 33 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 35 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.12 1.17 7.16 -52.49 -0.38 0.80 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.13 7.95 -52.49 -0.42 0.72 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -30.39 334.32 -9.09 -39.47 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.38 Total: 4.69 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: -4.48 Total: -34.92 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.39 -9.09 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250109556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.717 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds