Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48502 * 109.46867 * 239.99746 * 3 2 1 5 5 H 1.48504 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47440 * 119.99608 * 3 2 1 7 7 C 1.37874 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47029 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47234 * 179.97438 * 11 10 9 13 13 C 1.35347 * 126.74617 * 125.29931 * 12 11 10 14 14 N 1.35321 * 106.17391 * 180.12764 * 13 12 11 15 15 C 1.46499 * 125.86767 * 179.90528 * 14 13 12 16 16 C 1.53000 * 109.46840 * 124.71639 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 H 1.08994 * 109.47704 * 54.99481 * 17 16 15 19 19 N 1.46909 * 109.46754 * 294.99510 * 17 16 15 20 20 C 1.50701 * 109.47025 * 175.00080 * 17 16 15 21 21 O 1.20821 * 120.00363 * 100.00051 * 20 17 16 22 22 O 1.34231 * 119.99743 * 279.99408 * 20 17 16 23 23 N 1.28719 * 108.25996 * 359.63792 * 14 13 12 24 24 N 1.28630 * 110.17579 * 0.23229 * 23 14 13 25 25 H 0.97001 * 119.99588 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46938 * 60.00593 * 9 7 2 27 27 H 1.08999 * 109.47160 * 299.99835 * 9 7 2 28 28 H 1.09002 * 109.47282 * 60.00742 * 10 9 7 29 29 H 1.08999 * 109.47267 * 299.99951 * 10 9 7 30 30 H 1.09002 * 109.46305 * 60.00361 * 11 10 9 31 31 H 1.08998 * 109.47494 * 300.00669 * 11 10 9 32 32 H 1.08006 * 126.91802 * 0.02562 * 13 12 11 33 33 H 1.09002 * 109.47391 * 4.71309 * 15 14 13 34 34 H 1.09001 * 109.46813 * 244.71365 * 15 14 13 35 35 H 1.09001 * 109.47194 * 299.99493 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99666 * 16 15 14 37 37 H 1.00897 * 110.99694 * 176.04869 * 19 17 16 38 38 H 1.00898 * 111.00060 * 299.99883 * 19 17 16 39 39 H 0.96699 * 116.99732 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1326 0.0005 13 6 2.5101 -7.1552 0.8857 14 7 3.5437 -7.9381 0.4986 15 6 3.9837 -9.1685 1.1611 16 6 3.9985 -10.3155 0.1487 17 6 4.4574 -11.6006 0.8407 18 1 3.8240 -11.7932 1.7066 19 7 5.8518 -11.4501 1.2779 20 6 4.3550 -12.7544 -0.1233 21 8 5.3417 -13.1535 -0.6949 22 8 3.1674 -13.3387 -0.3469 23 7 4.0703 -7.4190 -0.5550 24 7 3.4467 -6.3413 -0.8777 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 0.8534 -5.0450 -0.8887 31 1 0.8538 -5.0447 0.8913 32 1 1.8578 -7.3137 1.7319 33 1 3.2975 -9.4093 1.9731 34 1 4.9867 -9.0258 1.5632 35 1 2.9955 -10.4582 -0.2534 36 1 4.6846 -10.0747 -0.6632 37 1 6.1582 -12.2609 1.7945 38 1 6.4596 -11.2707 0.4928 39 1 3.1515 -14.0752 -0.9733 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254055002.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = -45.490907 kcal Electronic energy + Delta-G solvation = -20850.564974 eV Core-core repulsion = 17407.384787 eV Total energy + Delta-G solvation = -3443.180187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.14207 -41.52312 -37.80560 -37.20316 -36.56301 -35.14885 -34.24924 -31.98247 -31.28418 -28.79517 -27.84153 -25.58481 -24.81452 -22.72313 -22.45061 -21.72632 -21.11982 -19.36410 -18.57977 -18.24395 -17.88192 -17.33880 -16.92454 -16.54963 -16.48346 -15.96072 -15.65180 -15.40736 -14.94499 -14.62454 -14.20696 -13.99525 -13.86817 -13.48132 -13.22962 -12.82948 -12.80022 -12.65106 -12.59911 -12.45889 -12.33283 -12.27624 -11.94758 -11.74404 -11.42225 -11.29834 -11.11218 -10.90928 -10.50635 -10.16581 -9.95824 -8.16617 -6.26689 0.71533 0.97741 1.40752 1.44164 1.51951 1.55781 1.62192 2.05999 2.43805 3.15838 3.26177 3.45303 3.58615 3.77438 3.90883 3.97908 4.15734 4.23408 4.28471 4.40167 4.47573 4.57063 4.70161 4.78065 4.89394 4.99818 5.18289 5.24331 5.29492 5.38037 5.48361 5.58068 5.78906 5.80763 5.84046 5.92029 6.24311 6.31848 6.83082 6.89153 7.41477 7.62344 8.94721 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.050528 B = 0.002240 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.016906 B =12498.216415 C =12712.017711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.026 4.026 12 C -0.034 4.034 13 C -0.030 4.030 14 N -0.285 5.285 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.116 3.884 18 H 0.156 0.844 19 N -0.814 5.814 20 C 0.449 3.551 21 O -0.555 6.555 22 O -0.512 6.512 23 N -0.119 5.119 24 N -0.312 5.312 25 H 0.264 0.736 26 H -0.007 1.007 27 H 0.004 0.996 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.151 0.849 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.359 0.641 38 H 0.351 0.649 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -30.530 7.286 31.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.065 4.065 12 C -0.173 4.173 13 C -0.181 4.181 14 N -0.079 5.079 15 C 0.001 3.999 16 C -0.154 4.154 17 C 0.001 3.999 18 H 0.174 0.826 19 N -0.345 5.345 20 C 0.290 3.710 21 O -0.445 6.445 22 O -0.324 6.324 23 N -0.098 5.098 24 N -0.178 5.178 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 6.674 -29.769 6.764 31.249 hybrid contribution -0.160 -0.330 -0.714 0.803 sum 6.514 -30.100 6.050 31.385 Atomic orbital electron populations 1.70075 1.07533 1.27770 1.51663 1.25932 0.95840 1.03111 0.94802 0.85553 0.78369 0.78396 0.79044 1.19666 1.20430 1.19161 1.21680 0.93301 0.92836 1.50571 0.93024 1.19016 0.94312 0.92547 0.95286 1.21301 0.97859 0.93602 0.99719 1.19895 0.94287 0.88788 1.03505 1.22330 0.99439 0.99978 0.95559 1.24005 0.96024 0.93389 1.04717 1.47709 1.20802 1.20289 1.19102 1.22403 1.05299 0.77238 0.94938 1.21699 1.03380 0.92040 0.98293 1.21320 0.94314 0.88005 0.96223 0.82626 1.59255 1.01275 1.45075 1.28928 1.25560 0.80280 0.84138 0.81037 1.90744 1.39491 1.64677 1.49624 1.84555 1.34684 1.50040 1.63092 1.78150 1.21774 1.06469 1.03384 1.75022 1.08127 1.09472 1.25179 0.92722 0.98870 0.97802 0.93789 0.94626 0.91315 0.88139 0.74599 0.83084 0.86587 0.89288 0.91690 0.82582 0.83448 0.71434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.86 5.13 30.60 0.16 -3.70 16 11 C -0.03 -0.89 5.79 29.85 0.17 -0.71 16 12 C -0.03 -1.09 6.50 41.60 0.27 -0.82 16 13 C -0.03 -0.65 11.49 83.49 0.96 0.31 16 14 N -0.28 -5.98 3.44 -347.72 -1.20 -7.17 16 15 C 0.12 1.16 6.34 86.38 0.55 1.71 16 16 C -0.12 -1.14 4.97 30.59 0.15 -0.99 16 17 C 0.12 0.70 3.26 44.17 0.14 0.84 16 18 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 19 N -0.81 -5.49 8.44 -171.79 -1.45 -6.94 16 20 C 0.45 4.90 7.57 71.24 0.54 5.44 16 21 O -0.55 -10.16 17.01 21.98 0.37 -9.79 16 22 O -0.51 -3.77 13.42 -51.43 -0.69 -4.46 16 23 N -0.12 -3.72 12.91 37.02 0.48 -3.24 16 24 N -0.31 -11.65 12.40 -48.61 -0.60 -12.25 16 25 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.10 2.91 8.12 -2.39 -0.02 2.89 16 32 H 0.24 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.15 0.17 8.07 -2.39 -0.02 0.15 16 34 H 0.12 1.15 7.75 -2.39 -0.02 1.13 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.01 8.12 -2.39 -0.02 1.00 16 37 H 0.36 1.60 9.06 -89.70 -0.81 0.79 16 38 H 0.35 3.47 8.58 -89.70 -0.77 2.70 16 39 H 0.42 0.41 9.10 -74.06 -0.67 -0.27 16 Total: -1.00 -83.77 342.28 1.84 -81.92 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -1.17 Total: -0.48 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.79 Total: -28.20 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.49 Total: -86.74 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.32 Total: -14.25 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -83.77 1.84 -81.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254055002.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.430 kcal (2) G-P(sol) polarization free energy of solvation -83.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds