Wall clock time and date at job start Tue Mar 31 2020 05:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00378 * 2 1 4 4 C 1.50699 * 109.47494 * 180.02562 * 3 2 1 5 5 N 1.30017 * 127.33294 * 269.68636 * 4 3 2 6 6 O 1.20655 * 112.29806 * 179.79456 * 5 4 3 7 7 C 1.33503 * 113.15726 * 0.49748 * 6 5 4 8 8 C 1.37355 * 106.33768 * 359.70758 * 7 6 5 9 9 C 1.47401 * 128.56222 * 180.02562 * 8 7 6 10 10 O 1.21612 * 120.00178 * 128.96184 * 9 8 7 11 11 N 1.34780 * 119.99991 * 308.96109 * 9 8 7 12 12 C 1.46500 * 120.00032 * 184.35649 * 11 9 8 13 13 C 1.50700 * 109.47118 * 89.99826 * 12 11 9 14 14 H 1.08009 * 120.00215 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00148 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00152 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00232 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47040 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46812 * 119.99905 * 17 15 13 20 20 H 1.48499 * 109.47373 * 240.00098 * 17 15 13 21 21 C 1.46503 * 119.99848 * 4.35257 * 11 9 8 22 22 C 1.53005 * 109.46680 * 122.91714 * 21 11 9 23 23 C 1.53003 * 109.47113 * 242.91273 * 21 11 9 24 24 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46959 * 299.99392 * 1 2 3 26 26 H 1.08998 * 109.47262 * 59.99365 * 1 2 3 27 27 H 1.09003 * 109.46690 * 60.00392 * 3 2 1 28 28 H 1.08996 * 109.47105 * 300.01131 * 3 2 1 29 29 H 1.07998 * 126.82982 * 179.66339 * 7 6 5 30 30 H 1.08990 * 109.47292 * 209.99611 * 12 11 9 31 31 H 1.08999 * 109.47076 * 330.00022 * 12 11 9 32 32 H 0.96996 * 120.00279 * 179.97438 * 16 15 13 33 33 H 1.08997 * 109.47433 * 2.91397 * 21 11 9 34 34 H 1.08997 * 109.47446 * 59.99690 * 22 21 11 35 35 H 1.09004 * 109.46709 * 180.02562 * 22 21 11 36 36 H 1.09001 * 109.46649 * 299.99853 * 22 21 11 37 37 H 1.09000 * 109.47077 * 60.00051 * 23 21 11 38 38 H 1.09001 * 109.47040 * 180.02562 * 23 21 11 39 39 H 1.08997 * 109.47072 * 300.00345 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2994 1.1296 1.0328 6 8 5.4604 1.0320 0.7194 7 6 5.6480 1.0173 -0.6023 8 6 4.4014 1.1162 -1.1706 9 6 4.0428 1.1444 -2.6000 10 8 3.1898 0.3906 -3.0279 11 7 4.6602 2.0056 -3.4329 12 6 4.2382 2.1010 -4.8325 13 6 3.1579 3.1438 -4.9615 14 1 2.8192 3.6815 -4.0881 15 6 2.6011 3.4109 -6.1942 16 7 3.0131 2.7559 -7.2576 17 14 1.2616 4.7030 -6.3539 18 1 0.9802 5.2919 -5.0201 19 1 1.7128 5.7717 -7.2811 20 1 0.0273 4.0731 -6.8878 21 6 5.7534 2.8463 -2.9384 22 6 7.0083 2.5967 -3.7775 23 6 5.3528 4.3191 -3.0458 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8464 -0.8898 29 1 6.5921 0.9433 -1.1215 30 1 5.0905 2.3826 -5.4506 31 1 3.8530 1.1362 -5.1624 32 1 2.6211 2.9435 -8.1248 33 1 5.9581 2.6005 -1.8965 34 1 6.8035 2.8425 -4.8195 35 1 7.8217 3.2219 -3.4094 36 1 7.2936 1.5475 -3.7010 37 1 4.4587 4.4969 -2.4481 38 1 6.1663 4.9446 -2.6784 39 1 5.1480 4.5649 -4.0878 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324041032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:44 Heat of formation + Delta-G solvation = -11.923468 kcal Electronic energy + Delta-G solvation = -23166.928920 eV Core-core repulsion = 19692.911575 eV Total energy + Delta-G solvation = -3474.017345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.85198 -39.19173 -37.81861 -36.03225 -33.90848 -32.94162 -31.93380 -30.91809 -28.37891 -27.49504 -26.82507 -25.71356 -24.45896 -22.64113 -21.51557 -20.94077 -19.03738 -17.76020 -17.26878 -16.73486 -16.49948 -16.22419 -15.72857 -15.33625 -14.98544 -14.43204 -14.24205 -13.96074 -13.42330 -13.24424 -12.65570 -12.47534 -12.36080 -12.27956 -11.79298 -11.61983 -11.50926 -11.44933 -11.22631 -10.99760 -10.91517 -10.68796 -10.47437 -10.12228 -10.05257 -9.67473 -9.60881 -9.51705 -9.12361 -8.47479 -7.76107 -6.09108 -4.12842 1.36041 1.80109 3.01299 3.25366 3.31452 3.34351 3.38574 3.64204 3.96383 4.30178 4.39360 4.49952 4.95986 5.12679 5.17934 5.21210 5.25677 5.31092 5.38899 5.48444 5.48887 5.58328 5.67374 5.72547 5.83214 5.94322 6.08573 6.19332 6.30943 6.52856 6.88911 7.03484 7.10725 7.39422 7.46554 7.87386 8.18064 8.21816 8.30047 8.81583 8.97282 9.51488 10.99117 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.006576 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.793335 B = 4257.190030 C = 5492.505588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.145 3.855 4 C 0.053 3.947 5 N -0.343 5.343 6 O 0.102 5.898 7 C -0.034 4.034 8 C -0.208 4.208 9 C 0.578 3.422 10 O -0.518 6.518 11 N -0.581 5.581 12 C 0.245 3.755 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.123 3.877 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.227 0.773 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.202 0.044 12.714 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C 0.068 3.932 4 C -0.109 4.109 5 N -0.047 5.047 6 O 0.036 5.964 7 C -0.115 4.115 8 C -0.216 4.216 9 C 0.362 3.638 10 O -0.395 6.395 11 N -0.313 5.313 12 C 0.127 3.873 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.019 3.981 22 C -0.221 4.221 23 C -0.215 4.215 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.243 0.757 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.606 -0.512 13.557 14.327 hybrid contribution -0.942 0.999 -1.095 1.756 sum 3.664 0.487 12.462 12.998 Atomic orbital electron populations 1.22763 0.80284 1.03042 1.00177 1.87942 1.20109 1.26109 1.95447 1.20464 0.84488 0.86169 1.02104 1.24284 0.97206 1.02422 0.86954 1.73579 0.89659 1.17910 1.23597 1.84525 1.21546 1.66831 1.23458 1.26306 1.00185 1.01710 0.83308 1.22719 0.92530 1.09594 0.96734 1.16884 0.82497 0.81743 0.82688 1.90820 1.31920 1.40468 1.76269 1.48254 1.33330 1.36798 1.12919 1.19341 0.95466 0.98575 0.73931 1.21457 1.20215 1.20596 0.93835 0.92277 1.24914 0.96880 0.96518 0.95719 1.69931 1.42772 1.41301 0.99228 0.86503 0.81922 0.81314 0.78062 1.19830 1.20956 1.20903 1.21224 0.87252 0.92035 0.97631 1.22178 0.96475 1.01284 1.02172 1.22139 1.00279 0.94392 1.04703 0.89346 0.94179 0.93319 0.91405 0.90154 0.75672 0.94292 0.93692 0.92749 0.90591 0.90921 0.91983 0.92796 0.92943 0.93118 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.45 10.69 -35.23 -0.38 -6.82 16 3 C 0.15 2.32 6.54 36.00 0.24 2.56 16 4 C 0.05 0.90 7.22 -79.77 -0.58 0.33 16 5 N -0.34 -5.39 12.01 34.78 0.42 -4.97 16 6 O 0.10 1.37 11.06 18.63 0.21 1.58 16 7 C -0.03 -0.43 10.06 30.41 0.31 -0.13 16 8 C -0.21 -3.57 5.50 -102.90 -0.57 -4.14 16 9 C 0.58 12.21 7.63 -12.53 -0.10 12.12 16 10 O -0.52 -13.27 16.66 5.27 0.09 -13.19 16 11 N -0.58 -11.81 2.39 -168.74 -0.40 -12.21 16 12 C 0.25 6.08 4.71 -5.19 -0.02 6.06 16 13 C -0.52 -14.01 7.84 -34.44 -0.27 -14.28 16 14 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.12 1.91 3.04 -67.92 -0.21 1.70 16 22 C -0.16 -2.18 9.12 37.16 0.34 -1.84 16 23 C -0.16 -2.50 8.55 37.16 0.32 -2.18 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.23 1.90 7.61 -52.49 -0.40 1.50 16 30 H 0.04 0.97 6.28 -51.93 -0.33 0.64 16 31 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.08 0.99 4.12 -51.93 -0.21 0.78 16 34 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -33.24 331.68 -4.24 -37.48 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.36 Total: -1.43 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 0.48 Total: 3.33 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.75 Total: -42.14 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.08 Total: -18.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.24 -4.24 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324041032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.560 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds