Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99860 * 2 1 4 4 C 1.53004 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46846 * 65.00463 * 4 3 2 6 6 C 1.36938 * 120.00081 * 89.99789 * 5 4 3 7 7 H 1.07997 * 119.99946 * 44.31303 * 6 5 4 8 8 C 1.38810 * 120.00093 * 224.58173 * 6 5 4 9 9 N 1.31627 * 119.99775 * 25.58395 * 8 6 5 10 10 Si 1.86801 * 120.00280 * 205.58223 * 8 6 5 11 11 H 1.48500 * 109.46931 * 59.99816 * 10 8 6 12 12 H 1.48496 * 109.47299 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46862 * 300.00266 * 10 8 6 14 14 C 1.46503 * 119.99781 * 269.99860 * 5 4 3 15 15 C 1.50699 * 109.47161 * 275.83269 * 14 5 4 16 16 N 1.30804 * 127.01862 * 96.01009 * 15 14 5 17 17 O 1.21589 * 111.71242 * 179.97438 * 16 15 14 18 18 C 1.32792 * 111.22174 * 359.94569 * 17 16 15 19 19 C 1.35842 * 106.52387 * 359.88222 * 18 17 16 20 20 C 1.50063 * 123.78333 * 179.43776 * 19 18 17 21 21 O 1.43615 * 107.87512 * 345.78869 * 20 19 18 22 22 C 1.42993 * 114.40088 * 49.86889 * 21 20 19 23 23 C 1.50635 * 130.95581 * 180.22664 * 18 17 16 24 24 H 1.09004 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46930 * 299.99864 * 1 2 3 26 26 H 1.08998 * 109.47273 * 59.99837 * 1 2 3 27 27 H 1.08999 * 109.46604 * 60.00723 * 3 2 1 28 28 H 1.08994 * 109.47474 * 300.00123 * 3 2 1 29 29 H 1.09002 * 109.47012 * 305.00813 * 4 3 2 30 30 H 1.08996 * 109.47117 * 185.00451 * 4 3 2 31 31 H 0.96997 * 119.99352 * 182.10913 * 9 8 6 32 32 H 1.08998 * 109.47600 * 35.83667 * 14 5 4 33 33 H 1.09001 * 109.46992 * 155.83510 * 14 5 4 34 34 H 1.08998 * 109.93163 * 226.09115 * 20 19 18 35 35 H 1.09005 * 109.63938 * 105.31527 * 20 19 18 36 36 H 1.08997 * 109.39928 * 169.40391 * 22 21 20 37 37 H 1.09003 * 109.33411 * 49.61602 * 22 21 20 38 38 H 1.08996 * 109.82588 * 283.62999 * 23 18 17 39 39 H 1.08996 * 109.82481 * 44.56386 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2678 1.3453 -2.3372 7 1 4.8534 2.2444 -2.2142 8 6 3.8057 0.9848 -3.5954 9 7 2.7253 0.2419 -3.7117 10 14 4.7169 1.5538 -5.1236 11 1 6.1088 1.0372 -5.0910 12 1 4.0254 1.0389 -6.3327 13 1 4.7405 3.0381 -5.1618 14 6 4.1062 -0.8925 -1.3404 15 6 5.4518 -1.3109 -0.8062 16 7 5.7238 -1.7287 0.4030 17 8 6.9034 -1.9936 0.5327 18 6 7.5706 -1.7811 -0.5956 19 6 6.6630 -1.3367 -1.5033 20 6 7.0085 -0.9650 -2.9156 21 8 8.4368 -0.8420 -3.0022 22 6 9.1591 -1.9512 -2.4612 23 6 9.0279 -1.9639 -0.9303 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8462 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8507 0.5683 0.8426 30 1 3.9784 2.1764 0.0903 31 1 2.4198 -0.0355 -4.5895 32 1 3.3191 -1.3642 -0.7521 33 1 4.0164 -1.2020 -2.3817 34 1 6.5399 -0.0159 -3.1753 35 1 6.6634 -1.7449 -3.5945 36 1 10.2110 -1.8658 -2.7337 37 1 8.7540 -2.8782 -2.8670 38 1 9.6106 -1.1481 -0.5026 39 1 9.3808 -2.9172 -0.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333099241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -3.928953 kcal Electronic energy + Delta-G solvation = -23502.566322 eV Core-core repulsion = 20028.895646 eV Total energy + Delta-G solvation = -3473.670676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.26277 -38.50591 -37.24702 -35.62718 -33.28548 -32.71767 -31.58404 -30.12320 -28.76623 -26.55667 -25.72914 -25.42363 -23.71073 -23.29823 -21.22352 -20.15509 -19.29727 -17.23324 -17.01990 -16.53095 -15.84878 -15.49144 -15.27703 -15.14500 -14.83140 -14.46605 -14.09918 -13.67434 -13.55457 -13.30148 -13.23646 -12.64707 -12.41967 -11.75088 -11.58560 -11.47736 -11.15742 -11.06963 -10.93312 -10.78595 -10.62465 -10.50618 -10.18253 -10.09117 -9.86918 -9.70665 -9.11639 -8.77603 -8.51948 -8.49174 -6.64396 -5.90289 -3.51614 1.98832 2.94764 3.31129 3.38298 3.41952 3.48664 3.99698 4.40641 4.67146 4.77821 4.99118 5.09674 5.20175 5.24294 5.34773 5.52969 5.57666 5.63288 5.70077 5.80329 5.92076 5.95244 6.02411 6.17413 6.21498 6.23030 6.32730 6.36272 6.53088 6.66938 6.80977 6.95839 6.98851 7.28014 7.32444 7.76825 8.04686 8.46950 8.96225 9.07846 9.66936 10.36248 11.08217 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.007838 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.222115 B = 3571.368014 C = 5085.165947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.375 6.375 3 C 0.050 3.950 4 C 0.148 3.852 5 N -0.561 5.561 6 C -0.281 4.281 7 H 0.058 0.942 8 C 0.032 3.968 9 N -0.862 5.862 10 Si 0.875 3.125 11 H -0.271 1.271 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.230 3.770 15 C 0.050 3.950 16 N -0.382 5.382 17 O 0.090 5.910 18 C -0.060 4.060 19 C -0.222 4.222 20 C 0.136 3.864 21 O -0.378 6.378 22 C 0.062 3.938 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 -4.042 3.414 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.293 6.293 3 C -0.029 4.029 4 C 0.021 3.979 5 N -0.281 5.281 6 C -0.411 4.411 7 H 0.075 0.925 8 C -0.172 4.172 9 N -0.500 5.500 10 Si 0.702 3.298 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.102 3.898 15 C -0.110 4.110 16 N -0.094 5.094 17 O 0.031 5.969 18 C -0.126 4.126 19 C -0.227 4.227 20 C 0.060 3.940 21 O -0.296 6.296 22 C -0.015 4.015 23 C -0.101 4.101 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.279 -4.283 4.290 8.728 hybrid contribution 0.183 0.491 -1.383 1.479 sum 6.462 -3.792 2.907 8.037 Atomic orbital electron populations 1.22546 0.83219 1.01346 0.98733 1.87917 1.17783 1.28522 1.95067 1.23282 0.97389 0.84116 0.98075 1.21027 0.89774 0.97244 0.89837 1.43453 1.75173 1.00513 1.08915 1.18878 1.28305 1.08242 0.85652 0.92471 1.25313 0.94355 0.98905 0.98652 1.70225 1.18635 1.37778 1.23341 0.86884 0.80619 0.79257 0.83019 1.19651 1.21506 1.20415 1.19267 0.84967 0.85335 1.00238 1.24933 1.00965 0.96488 0.88626 1.74325 0.93561 1.20618 1.20871 1.84606 1.15281 1.64087 1.32917 1.23802 0.97177 1.04432 0.87145 1.21340 0.93587 1.07813 0.99930 1.21118 0.79449 1.04074 0.89385 1.88099 1.18340 1.42329 1.80866 1.22633 0.97686 0.90551 0.90656 1.20835 0.87373 1.03861 0.98012 0.90896 0.95733 0.94514 0.96181 0.92768 0.93930 0.92321 0.93401 0.92228 0.89176 0.85183 0.91913 0.87827 0.92684 0.88768 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.01 101.05 1.11 1.79 16 2 O -0.37 -8.16 9.44 -35.23 -0.33 -8.49 16 3 C 0.05 1.06 6.28 37.16 0.23 1.29 16 4 C 0.15 3.27 6.09 -4.04 -0.02 3.25 16 5 N -0.56 -13.74 2.31 -174.61 -0.40 -14.14 16 6 C -0.28 -7.27 8.80 -15.06 -0.13 -7.40 16 7 H 0.06 1.51 7.95 -52.49 -0.42 1.09 16 8 C 0.03 0.82 4.71 -17.43 -0.08 0.74 16 9 N -0.86 -23.39 12.40 55.49 0.69 -22.70 16 10 Si 0.87 20.01 28.82 -169.99 -4.90 15.11 16 11 H -0.27 -6.01 6.62 56.52 0.37 -5.64 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.23 5.52 5.71 -5.19 -0.03 5.49 16 15 C 0.05 1.12 6.89 -82.46 -0.57 0.55 16 16 N -0.38 -8.28 12.11 33.44 0.40 -7.88 16 17 O 0.09 1.73 11.19 20.09 0.22 1.95 16 18 C -0.06 -1.05 7.51 -35.20 -0.26 -1.31 16 19 C -0.22 -4.46 6.17 -105.22 -0.65 -5.11 16 20 C 0.14 2.61 7.26 35.70 0.26 2.87 16 21 O -0.38 -6.50 10.76 -35.23 -0.38 -6.88 16 22 C 0.06 0.77 6.77 37.50 0.25 1.02 16 23 C -0.06 -0.77 6.56 -27.58 -0.18 -0.95 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.49 7.03 -51.93 -0.37 1.12 16 33 H 0.09 2.31 6.33 -51.93 -0.33 1.98 16 34 H 0.13 2.84 6.24 -51.93 -0.32 2.52 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -29.71 324.99 -5.53 -35.24 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.66 Total: 0.67 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.07 Total: 2.20 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.69 Total: -44.71 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.49 Total: -13.42 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.90 Total: 15.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.71 -5.53 -35.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333099241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.315 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds