Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86799 * 120.00382 * 2 1 4 4 H 1.48496 * 109.47349 * 240.00010 * 3 2 1 5 5 H 1.48497 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47128 * 119.99906 * 3 2 1 7 7 C 1.39875 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99887 * 197.95331 * 7 2 1 9 9 C 1.41138 * 119.99848 * 17.95096 * 7 2 1 10 10 C 1.40878 * 120.15535 * 204.60718 * 9 7 2 11 11 C 1.36334 * 119.84007 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15819 * 359.97438 * 11 10 9 13 13 N 1.38863 * 119.84375 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00163 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47145 * 180.02562 * 14 13 12 16 16 C 1.34851 * 125.89184 * 94.68757 * 15 14 13 17 17 C 1.40894 * 107.41425 * 179.88422 * 16 15 14 18 18 C 1.34845 * 107.41850 * 0.38505 * 17 16 15 19 19 N 1.36339 * 108.21783 * 359.76229 * 18 17 16 20 20 C 1.46508 * 125.63521 * 180.02562 * 19 18 17 21 21 C 1.52999 * 117.49805 * 8.59894 * 20 19 18 22 22 C 1.53005 * 60.00228 * 252.51269 * 21 20 19 23 23 C 1.39560 * 120.31804 * 0.25624 * 12 11 10 24 24 C 1.36341 * 120.15827 * 359.48761 * 23 12 11 25 25 H 0.97007 * 119.99842 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.07987 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.92334 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99328 * 0.27856 * 13 12 11 29 29 H 1.09004 * 109.47139 * 299.99674 * 14 13 12 30 30 H 1.08996 * 109.47172 * 59.99649 * 14 13 12 31 31 H 1.07998 * 126.29479 * 0.02579 * 16 15 14 32 32 H 1.08006 * 126.28945 * 180.16961 * 17 16 15 33 33 H 1.07998 * 125.89169 * 179.81108 * 18 17 16 34 34 H 1.09002 * 115.54722 * 154.31230 * 20 19 18 35 35 H 1.08998 * 117.49611 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49770 * 145.02006 * 21 20 19 37 37 H 1.08995 * 117.49745 * 252.51882 * 22 21 20 38 38 H 1.08998 * 117.49788 * 107.48929 * 22 21 20 39 39 H 1.07998 * 119.92648 * 179.71846 * 23 12 11 40 40 H 1.08000 * 120.08126 * 180.23154 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2877 9 6 1.3541 -2.4037 -0.3778 10 6 1.8264 -3.6473 0.0859 11 6 1.1899 -4.7951 -0.2829 12 6 0.0725 -4.7401 -1.1174 13 7 -0.5705 -5.9133 -1.4895 14 6 -1.7433 -5.8596 -2.3657 15 6 -2.2488 -7.2573 -2.6145 16 6 -3.2269 -7.8788 -1.9248 17 6 -3.3857 -9.1629 -2.4825 18 6 -2.4927 -9.2803 -3.4861 19 7 -1.7921 -8.1138 -3.5720 20 6 -0.7252 -7.8278 -4.5344 21 6 -0.4958 -8.8419 -5.6569 22 6 0.5098 -8.7308 -4.5090 23 6 -0.3981 -3.5121 -1.5846 24 6 0.2254 -2.3558 -1.2196 25 1 -0.4850 0.8401 0.0004 26 1 2.6913 -3.6914 0.7315 27 1 1.5511 -5.7493 0.0715 28 1 -0.2453 -6.7681 -1.1661 29 1 -2.5264 -5.2699 -1.8890 30 1 -1.4675 -5.3983 -3.3140 31 1 -3.7873 -7.4670 -1.0986 32 1 -4.0904 -9.9161 -2.1624 33 1 -2.3566 -10.1483 -4.1141 34 1 -0.5735 -6.7741 -4.7687 35 1 -1.1390 -9.7216 -5.6795 36 1 -0.1933 -8.4554 -6.6301 37 1 1.4737 -8.2712 -4.7272 38 1 0.5283 -9.5376 -3.7764 39 1 -1.2606 -3.4772 -2.2337 40 1 -0.1421 -1.4059 -1.5788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333556297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = 102.838387 kcal Electronic energy + Delta-G solvation = -20794.654917 eV Core-core repulsion = 17768.756035 eV Total energy + Delta-G solvation = -3025.898883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37884 -37.90658 -37.07310 -35.05744 -33.02807 -30.67177 -30.16884 -29.43925 -28.08256 -25.31963 -23.70978 -23.08599 -22.80107 -21.12830 -20.37316 -20.02558 -18.76339 -17.47339 -17.18910 -15.98358 -15.58861 -15.06497 -14.82580 -14.27373 -14.07855 -13.92056 -13.69736 -13.01637 -12.66055 -12.57550 -12.56249 -12.23840 -12.06059 -11.84111 -11.67687 -11.56805 -11.10940 -11.01498 -10.99831 -10.89689 -10.83817 -10.45531 -9.70251 -9.28672 -9.21408 -8.52259 -8.49456 -8.06306 -7.48216 -6.62714 -6.37602 -4.01929 2.10062 2.75436 2.94247 3.02281 3.11412 3.15061 3.18229 3.37356 3.47008 4.06413 4.26486 4.46964 4.51834 4.62554 4.77804 4.82734 5.04730 5.23443 5.34932 5.48392 5.50919 5.66974 5.70827 5.81399 5.88071 5.94399 6.27506 6.30259 6.33237 6.39198 6.93075 6.95020 7.04447 7.21413 7.26893 7.36535 7.37815 7.56741 7.70407 7.85691 8.16295 8.30611 8.50457 8.71802 8.81590 9.07392 9.16748 10.38824 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029349 B = 0.003298 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.796392 B = 8488.726719 C = 8795.467740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.186 4.186 11 C -0.158 4.158 12 C 0.093 3.907 13 N -0.756 5.756 14 C 0.209 3.791 15 C 0.015 3.985 16 C -0.184 4.184 17 C -0.201 4.201 18 C -0.019 4.019 19 N -0.410 5.410 20 C 0.061 3.939 21 C -0.178 4.178 22 C -0.177 4.177 23 C -0.165 4.165 24 C -0.124 4.124 25 H 0.277 0.723 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.385 0.615 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -14.498 -9.243 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.207 4.207 11 C -0.180 4.180 12 C -0.004 4.004 13 N -0.392 5.392 14 C 0.083 3.917 15 C -0.096 4.096 16 C -0.209 4.209 17 C -0.226 4.226 18 C -0.149 4.149 19 N -0.085 5.085 20 C -0.043 4.043 21 C -0.215 4.215 22 C -0.215 4.215 23 C -0.187 4.187 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.218 0.782 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.789 -14.135 -9.580 17.490 hybrid contribution 0.385 0.377 0.193 0.572 sum -3.404 -13.757 -9.386 16.999 Atomic orbital electron populations 1.69849 1.07347 1.28705 1.37533 1.25790 0.94649 1.00845 0.92732 0.86467 0.80136 0.80884 0.79714 1.19117 1.20586 1.19284 1.19338 0.97907 0.91419 1.41295 0.91008 1.17482 0.92433 0.91951 0.90944 1.20538 1.02699 0.92601 1.04821 1.19794 0.97891 0.97024 1.03257 1.17340 0.95676 0.85507 1.01885 1.43898 1.32411 1.05997 1.56923 1.19355 0.89165 0.88906 0.94258 1.20491 1.00416 0.94389 0.94281 1.20763 1.01702 0.95499 1.02951 1.20838 1.03235 0.98439 1.00059 1.21644 0.98678 0.90763 1.03794 1.43414 1.27385 1.12136 1.25586 1.21949 0.90226 0.98264 0.93844 1.23375 1.02847 1.00862 0.94460 1.23443 0.94667 1.02418 1.00928 1.20082 1.01641 0.91935 1.05034 1.20927 0.98200 0.96404 0.98887 0.91269 0.89094 0.89689 0.78243 0.91370 0.93295 0.84587 0.84811 0.82640 0.84276 0.88034 0.87266 0.87252 0.88089 0.89467 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 2 C 0.08 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.30 29.60 -169.99 -5.03 14.26 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.79 9.03 -37.87 -0.34 -13.13 16 8 H 0.07 1.89 7.91 -52.49 -0.41 1.48 16 9 C 0.07 2.03 5.57 -106.80 -0.60 1.44 16 10 C -0.19 -4.65 9.74 -39.27 -0.38 -5.03 16 11 C -0.16 -3.57 9.82 -39.77 -0.39 -3.96 16 12 C 0.09 2.03 6.67 -83.69 -0.56 1.47 16 13 N -0.76 -13.51 5.69 -59.68 -0.34 -13.85 16 14 C 0.21 3.29 5.05 -5.20 -0.03 3.26 16 15 C 0.02 0.22 6.26 -81.79 -0.51 -0.29 16 16 C -0.18 -2.55 10.77 -39.78 -0.43 -2.98 16 17 C -0.20 -2.46 10.86 -39.78 -0.43 -2.89 16 18 C -0.02 -0.22 10.73 -16.75 -0.18 -0.40 16 19 N -0.41 -5.11 3.08 -105.47 -0.33 -5.44 16 20 C 0.06 0.65 6.56 -67.92 -0.45 0.20 16 21 C -0.18 -1.38 9.97 -26.73 -0.27 -1.65 16 22 C -0.18 -1.60 10.39 -26.72 -0.28 -1.88 16 23 C -0.17 -3.86 9.23 -39.77 -0.37 -4.23 16 24 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 25 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 26 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 27 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.39 6.56 8.46 -40.82 -0.35 6.22 16 29 H 0.07 1.12 7.94 -51.93 -0.41 0.70 16 30 H 0.05 0.77 7.18 -51.93 -0.37 0.39 16 31 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.16 1.34 6.99 -52.49 -0.37 0.98 16 34 H 0.14 1.54 7.41 -51.93 -0.38 1.16 16 35 H 0.10 0.72 6.78 -51.93 -0.35 0.36 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.86 6.68 -52.49 -0.35 1.51 16 40 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -28.83 335.52 -11.08 -39.91 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.42 Total: 12.79 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -5.63 Total: -31.82 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.06 Total: -40.20 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.83 -11.08 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333556297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.745 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds