Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47450 * 2 1 4 4 C 1.42891 * 114.00366 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47147 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47100 * 180.02562 * 5 4 3 7 7 C 1.34224 * 125.74549 * 125.00107 * 6 5 4 8 8 C 1.38125 * 107.40779 * 180.02562 * 7 6 5 9 9 C 1.47288 * 126.42840 * 180.02562 * 8 7 6 10 10 O 1.21522 * 119.99773 * 359.97438 * 9 8 7 11 11 O 1.34750 * 120.00260 * 179.97438 * 9 8 7 12 12 C 1.45197 * 117.00146 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47307 * 29.99823 * 12 11 9 14 14 C 1.52999 * 109.47111 * 270.00050 * 12 11 9 15 15 C 1.50698 * 109.47040 * 150.00037 * 12 11 9 16 16 H 1.07999 * 120.00525 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99894 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99831 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00255 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46605 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47333 * 119.99398 * 19 17 15 22 22 H 1.48494 * 109.47277 * 240.00078 * 19 17 15 23 23 C 1.41345 * 107.14765 * 359.97438 * 8 7 6 24 24 N 1.30428 * 108.01322 * 0.02562 * 23 8 7 25 25 H 1.08998 * 109.47174 * 59.99854 * 1 2 3 26 26 H 1.08995 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46867 * 300.00273 * 1 2 3 28 28 H 1.08995 * 109.47502 * 239.99977 * 2 1 3 29 29 H 1.08999 * 109.47130 * 119.99591 * 2 1 3 30 30 H 1.08995 * 109.47317 * 60.00052 * 4 3 2 31 31 H 1.09010 * 109.47395 * 299.99697 * 4 3 2 32 32 H 1.09000 * 109.47649 * 60.00232 * 5 4 3 33 33 H 1.09006 * 109.46788 * 299.99546 * 5 4 3 34 34 H 1.07997 * 126.29929 * 0.02562 * 7 6 5 35 35 H 1.09003 * 109.47384 * 299.99693 * 14 12 11 36 36 H 1.09000 * 109.47324 * 59.99519 * 14 12 11 37 37 H 1.09001 * 109.47136 * 180.02562 * 14 12 11 38 38 H 0.97006 * 119.99994 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.99702 * 179.73463 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 7 5.2858 3.0541 0.0012 7 6 6.0181 3.7392 -0.8910 8 6 7.3449 3.5937 -0.5354 9 6 8.5056 4.1751 -1.2311 10 8 8.3402 4.8590 -2.2219 11 8 9.7510 3.9486 -0.7690 12 6 10.8472 4.5526 -1.5050 13 1 10.5076 5.4797 -1.9668 14 6 11.3253 3.5871 -2.5914 15 6 11.9836 4.8487 -0.5606 16 1 11.8911 4.6075 0.4881 17 6 13.1411 5.4285 -1.0350 18 7 13.2536 5.7227 -2.3119 19 14 14.5500 5.7948 0.1355 20 1 14.1755 5.3711 1.5087 21 1 15.7605 5.0526 -0.2992 22 1 14.8337 7.2524 0.1278 23 6 7.3796 2.7830 0.6219 24 7 6.1522 2.4686 0.9311 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8891 31 1 3.8333 0.9767 0.8909 32 1 3.4223 3.4217 0.8911 33 1 3.4229 3.4221 -0.8889 34 1 5.6396 4.3011 -1.7321 35 1 11.6649 2.6599 -2.1296 36 1 10.5033 3.3729 -3.2745 37 1 12.1485 4.0403 -3.1436 38 1 14.0681 6.1303 -2.6458 39 1 8.2672 2.4739 1.1540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341849730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -83.254542 kcal Electronic energy + Delta-G solvation = -21201.475218 eV Core-core repulsion = 17724.364726 eV Total energy + Delta-G solvation = -3477.110492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48973 -40.77117 -39.16023 -37.41609 -35.33797 -35.07875 -32.36356 -31.91453 -31.25823 -29.58652 -27.42154 -25.32131 -24.35098 -23.72957 -22.80603 -21.67919 -21.03725 -19.16855 -18.52638 -17.93276 -17.58320 -17.41317 -16.83208 -16.65178 -16.21956 -16.13702 -15.53449 -15.01237 -14.92059 -14.75777 -14.26959 -13.92509 -13.76760 -13.31837 -13.30442 -13.14267 -13.00658 -12.90226 -12.77729 -12.38404 -12.32710 -12.15928 -12.11705 -11.99281 -11.53013 -11.27183 -10.93305 -10.70850 -10.67168 -10.57072 -9.89005 -8.25601 -6.41612 0.32291 1.00125 1.10570 1.44406 1.44954 1.59107 2.13890 2.25668 2.47125 2.62695 3.05130 3.50118 3.74522 3.82503 3.90295 4.04556 4.13650 4.19723 4.25170 4.33667 4.46912 4.54985 4.59200 4.64326 4.68765 4.84199 4.85750 4.90048 5.01791 5.21302 5.26378 5.34177 5.52940 5.67719 5.70297 5.96071 6.07094 6.13180 6.39263 6.64602 7.06064 7.30621 8.82513 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.047662 B = 0.002617 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.332816 B =10695.505404 C =10928.076921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.400 6.400 4 C 0.058 3.942 5 C 0.130 3.870 6 N -0.352 5.352 7 C 0.155 3.845 8 C -0.301 4.301 9 C 0.528 3.472 10 O -0.564 6.564 11 O -0.357 6.357 12 C 0.218 3.782 13 H 0.008 0.992 14 C -0.142 4.142 15 C -0.544 4.544 16 H 0.068 0.932 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.277 1.277 23 C 0.107 3.893 24 N -0.312 5.312 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.219 0.781 35 H 0.045 0.955 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.270 0.730 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.800 -10.188 4.911 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.319 6.319 4 C -0.019 4.019 5 C 0.011 3.989 6 N -0.131 5.131 7 C 0.003 3.997 8 C -0.314 4.314 9 C 0.376 3.624 10 O -0.458 6.458 11 O -0.273 6.273 12 C 0.165 3.835 13 H 0.026 0.974 14 C -0.199 4.199 15 C -0.582 4.582 16 H 0.087 0.913 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.807 3.193 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.202 1.202 23 C -0.080 4.080 24 N -0.132 5.132 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.156 0.844 34 H 0.236 0.764 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -23.754 -10.434 5.336 26.488 hybrid contribution 1.695 0.635 -0.532 1.887 sum -22.059 -9.799 4.804 24.611 Atomic orbital electron populations 1.21768 0.92391 1.03507 1.02980 1.22696 0.96555 0.82280 1.00971 1.87759 1.19856 1.28584 1.95677 1.22480 0.81914 0.95861 1.01690 1.21816 0.71709 0.97703 1.07701 1.48552 1.07683 1.37101 1.19763 1.23294 0.89401 0.92939 0.94084 1.19478 0.91389 1.15662 1.04884 1.20586 0.83858 0.76674 0.81310 1.90732 1.87216 1.39924 1.27908 1.86508 1.15380 1.69236 1.56206 1.20344 0.81097 0.91339 0.90706 0.97413 1.21981 1.00726 0.99100 0.98132 1.21331 0.99289 1.42144 0.95420 0.91344 1.25843 1.00949 0.94389 0.97366 1.70031 1.28746 1.42129 1.14645 0.85121 0.77639 0.77930 0.78617 1.18696 1.19705 1.20222 1.24428 0.96274 0.93540 0.93788 1.77161 1.00140 1.21751 1.14130 0.91935 0.89244 0.92034 0.92580 0.92697 0.92604 0.92420 0.87253 0.84433 0.76442 0.93551 0.95785 0.90061 0.92043 0.77642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.40 -6.17 10.34 -148.98 -1.54 -7.71 16 4 C 0.06 0.87 6.11 71.98 0.44 1.31 16 5 C 0.13 1.81 6.86 86.38 0.59 2.40 16 6 N -0.35 -7.63 3.65 -346.24 -1.26 -8.89 16 7 C 0.16 3.84 11.25 84.30 0.95 4.79 16 8 C -0.30 -10.08 6.13 -20.16 -0.12 -10.20 16 9 C 0.53 23.51 7.93 70.20 0.56 24.06 16 10 O -0.56 -27.91 16.16 19.77 0.32 -27.59 16 11 O -0.36 -17.78 9.71 -56.61 -0.55 -18.33 16 12 C 0.22 12.28 2.56 29.85 0.08 12.36 16 13 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 14 C -0.14 -7.45 9.33 71.98 0.67 -6.78 16 15 C -0.54 -31.30 8.90 25.60 0.23 -31.08 16 16 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 17 C 0.01 0.78 5.30 84.66 0.45 1.23 16 18 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 19 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 23 C 0.11 3.18 11.87 85.67 1.02 4.20 16 24 N -0.31 -8.33 12.33 -56.25 -0.69 -9.02 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 1.17 8.06 -2.38 -0.02 1.15 16 34 H 0.22 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.08 4.56 6.07 -2.39 -0.01 4.54 16 38 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 39 H 0.21 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -71.79 342.49 5.65 -66.14 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.04 Total: 10.23 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.07 Total: 2.79 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.71 Total: -70.86 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.77 Total: -53.63 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.79 5.65 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341849730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.114 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds