Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47147 * 179.97438 * 16 14 13 18 18 C 1.42900 * 114.00095 * 180.02562 * 17 16 14 19 19 C 1.50691 * 109.47446 * 180.02562 * 18 17 16 20 20 C 1.41382 * 126.79942 * 359.70581 * 19 18 17 21 21 C 1.35459 * 103.98542 * 179.89097 * 20 19 18 22 22 C 1.50696 * 126.77613 * 180.10386 * 21 20 19 23 23 O 1.34039 * 106.44409 * 0.37126 * 21 20 19 24 24 N 1.20919 * 111.56647 * 359.74821 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 33 33 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 34 34 H 1.09005 * 109.47148 * 300.00312 * 18 17 16 35 35 H 1.08999 * 109.47445 * 59.99803 * 18 17 16 36 36 H 1.07997 * 128.00632 * 0.03159 * 20 19 18 37 37 H 1.08997 * 109.47037 * 180.30528 * 22 21 20 38 38 H 1.09007 * 109.47125 * 300.29745 * 22 21 20 39 39 H 1.08991 * 109.47913 * 60.29741 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 8 -1.2890 3.8577 -2.5297 18 6 -1.7664 4.5202 -3.7024 19 6 -3.1653 5.0251 -3.4598 20 6 -3.9242 4.8813 -2.2756 21 6 -5.0951 5.5003 -2.5599 22 6 -6.2819 5.6505 -1.6435 23 8 -4.9918 5.9475 -3.8193 24 7 -3.9167 5.6751 -4.3010 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.7280 4.1542 -2.8665 33 1 0.0679 2.6147 -3.4685 34 1 -1.1127 5.3604 -3.9366 35 1 -1.7722 3.8205 -4.5382 36 1 -3.6360 4.3933 -1.3563 37 1 -7.0741 6.1917 -2.1608 38 1 -6.6447 4.6642 -1.3542 39 1 -5.9855 6.2042 -0.7527 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358128214.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -47.250257 kcal Electronic energy + Delta-G solvation = -21721.619577 eV Core-core repulsion = 18246.070348 eV Total energy + Delta-G solvation = -3475.549229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.97187 -40.76781 -38.88384 -36.83625 -35.25904 -34.30458 -34.27326 -32.90002 -30.09857 -28.81993 -28.58442 -27.28152 -24.89802 -23.94520 -22.23172 -21.38562 -21.03169 -18.97968 -18.77486 -18.41228 -17.67813 -17.36315 -17.33879 -16.82276 -16.12685 -15.91715 -15.62695 -14.99546 -14.58770 -14.50940 -14.26892 -14.08644 -13.96078 -13.56927 -13.24185 -13.21182 -13.15594 -12.91144 -12.79890 -12.68255 -12.18057 -12.13787 -12.05165 -11.57647 -11.38577 -11.04656 -10.64709 -10.62602 -10.47735 -10.26890 -9.62456 -8.15000 -6.32248 0.44231 1.16358 1.46153 1.46305 1.56810 1.83009 1.84154 2.18064 2.41747 2.86220 3.14761 3.44735 3.69393 3.92320 4.08064 4.20920 4.23666 4.28815 4.38944 4.42461 4.47896 4.50498 4.58237 4.72352 4.77402 4.88772 4.98357 5.07509 5.23612 5.26811 5.44848 5.57094 5.63268 5.79355 5.87475 6.02570 6.18363 6.76258 7.00914 7.19687 7.35180 7.60660 8.90416 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034685 B = 0.002980 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.082781 B = 9393.179048 C = 9743.749914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.702 5.702 14 C 0.495 3.505 15 O -0.577 6.577 16 C 0.054 3.946 17 O -0.384 6.384 18 C 0.141 3.859 19 C 0.007 3.993 20 C -0.236 4.236 21 C -0.022 4.022 22 C -0.073 4.073 23 O 0.093 5.907 24 N -0.384 5.384 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.407 0.593 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 8.244 -12.338 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.353 5.353 14 C 0.281 3.719 15 O -0.457 6.457 16 C -0.025 4.025 17 O -0.302 6.302 18 C 0.064 3.936 19 C -0.151 4.151 20 C -0.257 4.257 21 C -0.086 4.086 22 C -0.130 4.130 23 O 0.028 5.972 24 N -0.091 5.091 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.186 0.814 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.928 8.521 -12.589 19.955 hybrid contribution 1.481 -0.500 0.853 1.781 sum -11.447 8.020 -11.735 18.250 Atomic orbital electron populations 1.21675 0.97087 0.99077 1.00201 1.21792 0.93608 0.99221 1.01409 1.18357 0.93627 0.89109 0.81287 0.98552 1.21592 0.91367 1.38818 1.06723 0.90756 1.25775 1.03262 0.94440 0.95101 1.70054 1.37066 1.38421 1.09857 0.85378 0.79191 0.77316 0.78635 1.20561 1.21129 1.18308 1.46127 1.15197 1.56173 1.17827 1.20864 0.82097 0.79017 0.89931 1.90679 1.52371 1.60313 1.42305 1.22326 0.84861 1.00119 0.95216 1.87930 1.30507 1.75182 1.36585 1.20483 0.87662 0.97474 0.87956 1.23501 0.99127 1.00207 0.92236 1.22534 0.94212 1.07532 1.01446 1.25212 0.99847 0.97290 0.86218 1.20585 0.91049 1.05555 0.95792 1.84757 1.27858 1.59475 1.25141 1.73731 0.94175 1.18695 1.22528 0.95785 0.93635 0.93742 0.91079 0.93770 0.92646 0.75794 0.87199 0.86968 0.88967 0.88836 0.81394 0.87982 0.87751 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.03 2.24 44.24 0.10 14.13 16 4 H 0.00 -0.21 7.58 -2.38 -0.02 -0.23 16 5 C -0.55 -28.20 8.73 25.60 0.22 -27.98 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.76 5.29 84.66 0.45 1.20 16 8 N -0.92 -51.96 11.29 21.45 0.24 -51.72 16 9 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 N -0.70 -27.39 5.02 -446.09 -2.24 -29.63 16 14 C 0.49 18.80 6.47 87.66 0.57 19.37 16 15 O -0.58 -27.75 13.64 16.00 0.22 -27.54 16 16 C 0.05 1.36 6.42 71.23 0.46 1.82 16 17 O -0.38 -11.18 9.37 -129.94 -1.22 -12.39 16 18 C 0.14 3.16 6.56 71.23 0.47 3.62 16 19 C 0.01 0.18 7.28 43.58 0.32 0.50 16 20 C -0.24 -5.99 10.45 22.40 0.23 -5.76 16 21 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 22 C -0.07 -0.74 10.45 71.23 0.74 0.00 16 23 O 0.09 2.18 11.20 71.65 0.80 2.98 16 24 N -0.38 -10.15 12.07 -49.55 -0.60 -10.75 16 25 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.92 5.65 -2.38 -0.01 1.91 16 28 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.41 12.78 8.54 -92.71 -0.79 11.98 16 32 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.17 4.58 8.05 -2.91 -0.02 4.56 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.16 331.73 4.03 -68.13 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.27 Total: 21.53 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.53 Total: -4.01 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -2.60 Total: -92.11 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.20 Total: -36.95 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -72.16 4.03 -68.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358128214.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.875 kcal (2) G-P(sol) polarization free energy of solvation -72.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds