Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99844 * 2 1 4 4 N 1.46902 * 109.46793 * 234.84488 * 3 2 1 5 5 C 1.46904 * 110.99604 * 164.40437 * 4 3 2 6 6 C 1.50692 * 109.47303 * 293.95356 * 5 4 3 7 7 H 1.08006 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00345 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99849 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47205 * 60.00447 * 10 8 6 12 12 H 1.48501 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47665 * 300.00359 * 10 8 6 14 14 C 1.46896 * 111.00306 * 288.35867 * 4 3 2 15 15 N 1.46500 * 109.47323 * 155.01383 * 14 4 3 16 16 C 1.46766 * 124.34920 * 279.34543 * 15 14 4 17 17 C 1.54659 * 105.38055 * 162.85312 * 16 15 14 18 18 H 1.08998 * 111.19454 * 267.59247 * 17 16 15 19 19 C 1.50694 * 110.85375 * 143.79001 * 17 16 15 20 20 O 1.20829 * 120.00010 * 6.33562 * 19 17 16 21 21 O 1.34231 * 120.00362 * 186.32971 * 19 17 16 22 22 C 1.54628 * 101.68424 * 25.76712 * 17 16 15 23 23 C 1.34416 * 124.34714 * 99.64135 * 15 14 4 24 24 O 1.21283 * 124.94495 * 0.39084 * 23 15 14 25 25 H 1.07998 * 120.00339 * 180.27126 * 1 2 3 26 26 H 1.08006 * 119.99684 * 0.28023 * 1 2 3 27 27 H 1.07996 * 119.99729 * 179.71969 * 2 1 3 28 28 H 1.08993 * 109.47312 * 354.84799 * 3 2 1 29 29 H 1.09001 * 109.46977 * 114.84980 * 3 2 1 30 30 H 1.09000 * 109.46959 * 53.95803 * 5 4 3 31 31 H 1.09005 * 109.46963 * 173.95355 * 5 4 3 32 32 H 0.97001 * 120.00356 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47027 * 275.01702 * 14 4 3 34 34 H 1.09004 * 109.47196 * 35.01598 * 14 4 3 35 35 H 1.08995 * 110.24358 * 281.98261 * 16 15 14 36 36 H 1.08998 * 110.24536 * 43.98385 * 16 15 14 37 37 H 0.96698 * 116.99884 * 180.02562 * 21 19 17 38 38 H 1.09007 * 110.48432 * 216.30882 * 22 17 16 39 39 H 1.08992 * 110.59849 * 93.72381 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9990 1.3304 -1.1324 5 6 3.4762 2.6956 -1.3905 6 6 2.3259 3.5502 -1.8566 7 1 1.3388 3.1221 -1.9512 8 6 2.5335 4.8785 -2.1622 9 7 3.7355 5.3996 -2.0475 10 14 1.1077 5.9377 -2.7407 11 1 0.0580 5.9711 -1.6908 12 1 1.5904 7.3174 -3.0026 13 1 0.5413 5.3667 -3.9889 14 6 4.1240 0.4133 -0.9065 15 7 4.6848 0.0014 -2.1958 16 6 4.1169 -1.0501 -3.0478 17 6 4.7468 -0.8319 -4.4434 18 1 4.1183 -0.1931 -5.0638 19 6 5.0105 -2.1498 -5.1249 20 8 4.6269 -3.1784 -4.6201 21 8 5.6714 -2.1811 -6.2928 22 6 6.0716 -0.1213 -4.0814 23 6 5.7886 0.5340 -2.7476 24 8 6.4600 1.4124 -2.2489 25 1 -0.5400 -0.9352 0.0044 26 1 -0.5400 0.9354 -0.0046 27 1 1.8500 -0.9353 0.0046 28 1 1.3588 2.1315 -0.0923 29 1 2.6192 1.4038 0.9325 30 1 3.8921 3.1143 -0.4741 31 1 4.2466 2.6715 -2.1613 32 1 3.8816 6.3342 -2.2622 33 1 4.8922 0.9180 -0.3207 34 1 3.7733 -0.4656 -0.3654 35 1 4.3826 -2.0337 -2.6606 36 1 3.0334 -0.9460 -3.1039 37 1 5.8163 -3.0499 -6.6920 38 1 6.3184 0.6305 -4.8311 39 1 6.8813 -0.8447 -3.9870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -87.464685 kcal Electronic energy + Delta-G solvation = -22708.207634 eV Core-core repulsion = 19230.914577 eV Total energy + Delta-G solvation = -3477.293058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.95506 -39.60379 -36.99528 -36.49635 -35.81808 -33.30227 -32.72756 -31.37959 -27.73497 -27.32433 -26.11746 -24.27956 -23.50781 -20.88950 -20.76254 -19.50705 -18.98859 -18.21077 -17.28881 -16.81086 -16.35267 -15.80142 -15.38957 -15.06343 -14.79198 -14.64666 -13.97720 -13.82404 -13.50632 -13.25077 -13.12350 -12.88105 -12.31875 -12.19682 -11.84141 -11.81018 -11.59814 -11.50634 -11.39743 -11.13497 -10.79076 -10.76598 -10.70313 -10.27913 -9.91677 -9.49111 -9.26934 -9.00945 -8.51914 -8.37520 -7.37295 -5.98417 -4.01756 1.93901 2.62278 2.68713 2.90298 3.33235 3.38112 3.39026 3.40179 4.16658 4.38197 4.43379 4.82847 4.89629 5.00372 5.19314 5.33869 5.36624 5.45098 5.50340 5.60980 5.68743 5.77103 5.84418 5.85097 6.07918 6.19069 6.23686 6.48157 6.71272 6.95653 7.18849 7.31420 7.31638 7.47998 7.63765 7.78403 8.06398 8.16173 8.49701 8.53927 9.05414 9.61906 11.11475 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.005425 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.173475 B = 5160.157320 C = 5968.759340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.547 5.547 5 C 0.196 3.804 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.287 3.713 15 N -0.601 5.601 16 C 0.124 3.876 17 C -0.098 4.098 18 H 0.134 0.866 19 C 0.496 3.504 20 O -0.511 6.511 21 O -0.511 6.511 22 C -0.139 4.139 23 C 0.519 3.481 24 O -0.515 6.515 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.032 0.968 30 H -0.009 1.009 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.114 0.886 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -15.877 -3.878 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.155 4.155 3 C -0.040 4.040 4 N -0.274 5.274 5 C 0.071 3.929 6 C -0.551 4.551 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.076 3.924 15 N -0.337 5.337 16 C 0.000 4.000 17 C -0.118 4.118 18 H 0.152 0.848 19 C 0.338 3.662 20 O -0.399 6.399 21 O -0.323 6.323 22 C -0.180 4.180 23 C 0.305 3.695 24 O -0.390 6.390 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.009 0.991 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.270 0.730 38 H 0.132 0.868 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.136 -15.239 -3.640 15.709 hybrid contribution -0.327 0.309 -0.114 0.464 sum 0.809 -14.930 -3.754 15.416 Atomic orbital electron populations 1.23720 0.95944 1.01300 1.02466 1.23004 0.95984 0.98311 0.98228 1.21118 0.95707 0.95693 0.91433 1.61941 1.14847 1.11899 1.38681 1.19771 0.96115 0.81032 0.95934 1.21088 0.95209 0.93978 1.44815 0.92018 1.24992 0.95659 0.97983 0.95841 1.69979 1.20699 1.13758 1.48631 0.86608 0.82431 0.79356 0.79252 1.20307 1.21370 1.20273 1.21753 0.92583 0.96070 0.82010 1.48263 1.26662 1.36951 1.21779 1.21884 1.00014 0.91540 0.86539 1.21966 0.99896 0.92331 0.97597 0.84794 1.22987 0.73458 0.91289 0.78449 1.90734 1.48720 1.35753 1.64716 1.84553 1.70447 1.40649 1.36611 1.22295 0.96353 1.01539 0.97778 1.20578 0.80815 0.81755 0.86360 1.90791 1.51961 1.29278 1.66955 0.89214 0.88535 0.88393 0.88614 0.95015 0.99104 0.94377 0.92859 0.92167 0.90477 0.89954 0.88786 0.73046 0.86757 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 14.32 29.01 0.42 -2.30 16 2 C -0.14 -2.04 9.24 -36.03 -0.33 -2.37 16 3 C 0.09 1.62 5.23 -4.98 -0.03 1.60 16 4 N -0.55 -11.30 4.54 -241.43 -1.10 -12.40 16 5 C 0.20 5.15 4.57 -4.98 -0.02 5.12 16 6 C -0.51 -14.29 8.29 -34.44 -0.29 -14.58 16 7 H 0.06 1.69 7.25 -52.48 -0.38 1.31 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.29 5.10 5.62 -63.32 -0.36 4.74 16 15 N -0.60 -9.92 3.09 -175.79 -0.54 -10.47 16 16 C 0.12 1.60 6.65 -3.02 -0.02 1.58 16 17 C -0.10 -1.11 3.67 -90.05 -0.33 -1.44 16 18 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 19 C 0.50 5.09 7.55 36.00 0.27 5.36 16 20 O -0.51 -6.48 16.33 -18.75 -0.31 -6.79 16 21 O -0.51 -3.93 13.41 -39.26 -0.53 -4.46 16 22 C -0.14 -1.74 6.39 -26.74 -0.17 -1.91 16 23 C 0.52 9.26 7.32 -10.86 -0.08 9.18 16 24 O -0.52 -11.69 16.91 5.55 0.09 -11.60 16 25 H 0.09 1.05 8.06 -52.49 -0.42 0.62 16 26 H 0.10 1.38 7.84 -52.48 -0.41 0.97 16 27 H 0.10 1.30 7.08 -52.49 -0.37 0.92 16 28 H 0.10 1.97 6.24 -51.93 -0.32 1.64 16 29 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.04 1.11 6.71 -51.93 -0.35 0.76 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.06 1.19 7.51 -51.93 -0.39 0.80 16 34 H 0.08 1.13 6.49 -51.93 -0.34 0.79 16 35 H 0.08 0.99 7.08 -51.93 -0.37 0.63 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.41 1.36 9.10 45.56 0.41 1.77 16 38 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.10 1.08 7.89 -51.93 -0.41 0.67 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -35.19 332.90 -7.27 -42.46 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.59 Total: 1.41 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.03 Total: 6.53 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.90 Total: -49.22 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.74 Total: -22.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.19 -7.27 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.007 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds