Wall clock time and date at job start Tue Mar 31 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99844 * 2 1 4 4 N 1.46902 * 109.46793 * 234.84488 * 3 2 1 5 5 C 1.46904 * 110.99604 * 164.40437 * 4 3 2 6 6 C 1.50692 * 109.47303 * 293.95356 * 5 4 3 7 7 H 1.08006 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99893 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00345 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99849 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47205 * 60.00447 * 10 8 6 12 12 H 1.48501 * 109.47213 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47665 * 300.00359 * 10 8 6 14 14 C 1.46896 * 111.00306 * 288.35867 * 4 3 2 15 15 N 1.46500 * 109.47323 * 155.01383 * 14 4 3 16 16 C 1.46766 * 124.34920 * 279.34543 * 15 14 4 17 17 C 1.54659 * 105.38055 * 162.85312 * 16 15 14 18 18 H 1.08998 * 111.19454 * 267.59247 * 17 16 15 19 19 C 1.50694 * 110.85375 * 143.79001 * 17 16 15 20 20 O 1.20829 * 120.00010 * 6.33562 * 19 17 16 21 21 O 1.34231 * 120.00362 * 186.32971 * 19 17 16 22 22 C 1.54628 * 101.68424 * 25.76712 * 17 16 15 23 23 C 1.34416 * 124.34714 * 99.64135 * 15 14 4 24 24 O 1.21283 * 124.94495 * 0.39084 * 23 15 14 25 25 H 1.07998 * 120.00339 * 180.27126 * 1 2 3 26 26 H 1.08006 * 119.99684 * 0.28023 * 1 2 3 27 27 H 1.07996 * 119.99729 * 179.71969 * 2 1 3 28 28 H 1.08993 * 109.47312 * 354.84799 * 3 2 1 29 29 H 1.09001 * 109.46977 * 114.84980 * 3 2 1 30 30 H 1.09000 * 109.46959 * 53.95803 * 5 4 3 31 31 H 1.09005 * 109.46963 * 173.95355 * 5 4 3 32 32 H 0.97001 * 120.00356 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47027 * 275.01702 * 14 4 3 34 34 H 1.09004 * 109.47196 * 35.01598 * 14 4 3 35 35 H 1.08995 * 110.24358 * 281.98261 * 16 15 14 36 36 H 1.08998 * 110.24536 * 43.98385 * 16 15 14 37 37 H 0.96698 * 116.99884 * 180.02562 * 21 19 17 38 38 H 1.09007 * 110.48432 * 216.30882 * 22 17 16 39 39 H 1.08992 * 110.59849 * 93.72381 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9990 1.3304 -1.1324 5 6 3.4762 2.6956 -1.3905 6 6 2.3259 3.5502 -1.8566 7 1 1.3388 3.1221 -1.9512 8 6 2.5335 4.8785 -2.1622 9 7 3.7355 5.3996 -2.0475 10 14 1.1077 5.9377 -2.7407 11 1 0.0580 5.9711 -1.6908 12 1 1.5904 7.3174 -3.0026 13 1 0.5413 5.3667 -3.9889 14 6 4.1240 0.4133 -0.9065 15 7 4.6848 0.0014 -2.1958 16 6 4.1169 -1.0501 -3.0478 17 6 4.7468 -0.8319 -4.4434 18 1 4.1183 -0.1931 -5.0638 19 6 5.0105 -2.1498 -5.1249 20 8 4.6269 -3.1784 -4.6201 21 8 5.6714 -2.1811 -6.2928 22 6 6.0716 -0.1213 -4.0814 23 6 5.7886 0.5340 -2.7476 24 8 6.4600 1.4124 -2.2489 25 1 -0.5400 -0.9352 0.0044 26 1 -0.5400 0.9354 -0.0046 27 1 1.8500 -0.9353 0.0046 28 1 1.3588 2.1315 -0.0923 29 1 2.6192 1.4038 0.9325 30 1 3.8921 3.1143 -0.4741 31 1 4.2466 2.6715 -2.1613 32 1 3.8816 6.3342 -2.2622 33 1 4.8922 0.9180 -0.3207 34 1 3.7733 -0.4656 -0.3654 35 1 4.3826 -2.0337 -2.6606 36 1 3.0334 -0.9460 -3.1039 37 1 5.8163 -3.0499 -6.6920 38 1 6.3184 0.6305 -4.8311 39 1 6.8813 -0.8447 -3.9870 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:31 Heat of formation + Delta-G solvation = -114.136537 kcal Electronic energy + Delta-G solvation = -22709.364212 eV Core-core repulsion = 19230.914577 eV Total energy + Delta-G solvation = -3478.449636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.98177 -40.71675 -38.60657 -37.48378 -36.93495 -34.99265 -34.32425 -32.82395 -29.38727 -28.77620 -27.45302 -25.79285 -24.92213 -22.55831 -21.77179 -20.77568 -20.28154 -19.04811 -18.58792 -18.21042 -17.97352 -17.04011 -16.70549 -16.48290 -16.26708 -16.05063 -15.45731 -15.35774 -14.68857 -14.56469 -14.18024 -14.17861 -14.01722 -13.77874 -13.41276 -13.19094 -12.85092 -12.68258 -12.64469 -12.53359 -12.46483 -12.38925 -12.02179 -11.69178 -11.65042 -11.31787 -10.91809 -10.62545 -10.26408 -9.86680 -9.12643 -8.19029 -6.31716 1.13789 1.38802 1.41611 1.42895 1.51105 1.56857 1.83661 2.20463 2.39238 3.12292 3.15490 3.29786 3.40588 3.83708 3.96531 4.08185 4.12706 4.30437 4.39036 4.40714 4.51701 4.60907 4.67970 4.78506 4.87723 4.92334 5.06537 5.18168 5.22551 5.47725 5.60616 5.61264 5.78254 5.99584 6.02247 6.12928 6.30141 6.51642 6.85244 7.00720 7.13804 7.38224 8.91508 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.005425 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.173475 B = 5160.157320 C = 5968.759340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.088 3.912 4 N -0.543 5.543 5 C 0.218 3.782 6 C -0.522 4.522 7 H 0.067 0.933 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.971 3.029 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.287 3.713 15 N -0.604 5.604 16 C 0.124 3.876 17 C -0.091 4.091 18 H 0.142 0.858 19 C 0.513 3.487 20 O -0.535 6.535 21 O -0.504 6.504 22 C -0.125 4.125 23 C 0.502 3.498 24 O -0.579 6.579 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.031 0.969 30 H -0.051 1.051 31 H 0.002 0.998 32 H 0.263 0.737 33 H 0.030 0.970 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.433 0.567 38 H 0.122 0.878 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -18.134 -5.272 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.166 4.166 3 C -0.039 4.039 4 N -0.269 5.269 5 C 0.092 3.908 6 C -0.560 4.560 7 H 0.085 0.915 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.795 3.205 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.190 1.190 14 C 0.075 3.925 15 N -0.337 5.337 16 C 0.002 3.998 17 C -0.110 4.110 18 H 0.159 0.841 19 C 0.355 3.645 20 O -0.425 6.425 21 O -0.317 6.317 22 C -0.165 4.165 23 C 0.290 3.710 24 O -0.458 6.458 25 H 0.140 0.860 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.087 0.913 29 H 0.049 0.951 30 H -0.034 1.034 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.295 0.705 38 H 0.140 0.860 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.800 -17.570 -5.065 18.302 hybrid contribution 0.272 0.950 0.337 1.044 sum -0.528 -16.619 -4.728 17.287 Atomic orbital electron populations 1.23941 0.95527 1.02398 0.99815 1.22831 0.96276 0.96959 1.00523 1.21106 0.94936 0.97364 0.90509 1.61926 1.15788 1.09013 1.40188 1.19279 0.94738 0.84105 0.92717 1.21403 0.95617 0.94568 1.44387 0.91485 1.25987 0.98508 0.99567 0.95789 1.70152 1.23338 1.14157 1.49925 0.85422 0.78789 0.77094 0.79215 1.18960 1.21171 1.19048 1.21792 0.90935 0.96561 0.83181 1.48415 1.26391 1.37265 1.21679 1.22050 1.00026 0.90803 0.86952 1.21869 0.98904 0.93229 0.97030 0.84066 1.22482 0.73151 0.90042 0.78784 1.90741 1.49896 1.36260 1.65577 1.84496 1.69382 1.42531 1.35333 1.22236 0.97927 1.01962 0.94393 1.21580 0.80447 0.81019 0.87950 1.90747 1.53995 1.32156 1.68913 0.86020 0.89475 0.85885 0.91286 0.95112 1.03377 0.97999 0.92846 0.95190 0.86412 0.88329 0.88613 0.70457 0.86013 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.42 14.32 67.78 0.97 -3.45 16 2 C -0.15 -4.08 9.24 25.64 0.24 -3.84 16 3 C 0.09 3.29 5.23 85.56 0.45 3.74 16 4 N -0.54 -23.03 4.54 -917.76 -4.17 -27.20 16 5 C 0.22 12.12 4.57 85.55 0.39 12.51 16 6 C -0.52 -29.97 8.29 25.60 0.21 -29.75 16 7 H 0.07 3.70 7.25 -2.91 -0.02 3.68 16 8 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 9 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 10 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 C 0.29 10.40 5.62 170.81 0.96 11.36 16 15 N -0.60 -20.01 3.09 -828.68 -2.56 -22.58 16 16 C 0.12 2.97 6.65 86.89 0.58 3.55 16 17 C -0.09 -1.84 3.67 -10.42 -0.04 -1.88 16 18 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 19 C 0.51 8.90 7.55 71.23 0.54 9.44 16 20 O -0.53 -11.93 16.33 21.95 0.36 -11.57 16 21 O -0.50 -5.94 13.41 -51.43 -0.69 -6.63 16 22 C -0.13 -2.98 6.39 30.59 0.20 -2.78 16 23 C 0.50 18.44 7.32 87.90 0.64 19.09 16 24 O -0.58 -28.11 16.91 -3.04 -0.05 -28.16 16 25 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.09 2.32 7.84 -2.91 -0.02 2.30 16 27 H 0.12 2.81 7.08 -2.91 -0.02 2.79 16 28 H 0.07 2.91 6.24 -2.39 -0.01 2.90 16 29 H 0.03 1.13 8.06 -2.39 -0.02 1.11 16 30 H -0.05 -3.22 8.12 -2.39 -0.02 -3.24 16 31 H 0.00 0.12 6.71 -2.38 -0.02 0.10 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.03 1.27 7.51 -2.39 -0.02 1.26 16 34 H 0.12 3.28 6.49 -2.38 -0.02 3.26 16 35 H 0.10 2.10 7.08 -2.39 -0.02 2.09 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.43 1.21 9.10 -74.06 -0.67 0.53 16 38 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.13 2.41 7.89 -2.39 -0.02 2.39 16 Total: -1.00 -81.11 332.90 1.18 -79.93 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.39 Total: 9.70 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.60 Total: 18.42 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -6.45 Total: -108.60 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -0.38 Total: -46.36 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -81.11 1.18 -79.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.211 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds